Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G333300 Prunus persica HOM05D001486 ORTHO05D004921 0.0e+00 2907.5 1491 100.0
MD13G1020400 Malus domestica HOM05D001486 ORTHO05D004921 0.0e+00 2617.4 1493 90.0
RcHm_v2.0_Chr4g0443061 Rosa chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2543.5 1492 86.8
FvH4_4g33560 Fragaria vesca HOM05D001486 ORTHO05D004921 0.0e+00 2539.6 1492 86.1
FAN22G2372 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2537.3 1492 86.0
QL03p035815 Quercus lobata HOM05D001486 ORTHO05D004921 0.0e+00 2531.1 1491 86.0
FAN17G1739 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2529.6 1492 85.7
FAN12G0503 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2529.2 1492 85.8
FAN07G1595 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2519.2 1483 86.0
Thecc.02G292500 Theobroma cacao HOM05D001486 ORTHO05D004921 0.0e+00 2475.3 1498 83.0
TWI74G0959 Tripterygium wilfordii HOM05D001486 ORTHO05D004921 0.0e+00 2472.2 1499 82.7
Atru.chr11.925 Acer truncatum HOM05D001486 ORTHO05D004921 0.0e+00 2466.0 1498 83.4
CANSAT01G0610 Cannabis sativa HOM05D001486 ORTHO05D004921 0.0e+00 2442.9 1492 83.2
Gohir.D02G139700 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 2442.2 1498 82.1
Manes.17G083900 Manihot esculenta HOM05D001486 ORTHO05D004921 0.0e+00 2440.6 1502 82.0
Ciclev10014036m.g Citrus clementina HOM05D001486 ORTHO05D004921 0.0e+00 2440.2 1498 82.2
Gorai.005G157100 Gossypium raimondii HOM05D001486 ORTHO05D004921 0.0e+00 2439.5 1497 82.1
Duzib268G0355 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 2439.1 1498 82.3
Potri.008G134800 Populus trichocarpa HOM05D001486 ORTHO05D004921 0.0e+00 2420.2 1498 81.0
arahy.Tifrunner.gnm1.ann1.WZE3XK Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 2419.0 1492 81.6
COL.COLO4_16588 Corchorus olitorius HOM05D001486 ORTHO05D004921 0.0e+00 2418.7 1498 81.8
Lj3A864G85 Lonicera japonica HOM05D001486 ORTHO05D004921 0.0e+00 2418.7 1501 81.0
Glyma.08G045900 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 2417.1 1493 81.6
CSS0037038 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 0.0e+00 2415.6 1494 82.0
arahy.Tifrunner.gnm1.ann1.FK3VI9 Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 2407.5 1483 81.7
Ca_17277_v3 Cicer arietinum L. HOM05D001486 ORTHO05D004921 0.0e+00 2400.2 1493 81.6
Glyma.05G238800 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 2399.4 1492 80.7
Actinidia36627 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2395.2 1498 80.8
Duzib251G0538 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 2394.0 1498 80.6
Medtr8g105290 Medicago truncatula HOM05D001486 ORTHO05D004921 0.0e+00 2394.0 1492 80.8
TPR.G19252 Trifolium pratense HOM05D001486 ORTHO05D004921 0.0e+00 2391.7 1492 80.8
Lj4g0010019 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 2390.1 1492 81.1
VMungo0251G0466 Vigna mungo HOM05D001486 ORTHO05D004921 0.0e+00 2376.7 1493 79.8
Phvul.002G321200 Phaseolus vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 2367.0 1493 79.8
Actinidia12394 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2366.3 1481 81.0
Sabra08G0102800 Salix brachista HOM05D001486 ORTHO05D004921 0.0e+00 2357.0 1535 78.0
Psat7g007960 Pisum sativum HOM05D001486 ORTHO05D004921 0.0e+00 2355.1 1494 79.7
Lalb_Chr09g0330891 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 2344.3 1492 79.0
PGR142G2431 Punica granatum HOM05D001486 ORTHO05D004921 0.0e+00 2336.2 1500 79.4
Lalb_Chr05g0222211 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 2332.4 1484 79.2
Eucgr.G02106 Eucalyptus grandis HOM05D001486 ORTHO05D004921 0.0e+00 2317.3 1501 78.5
vmacro10693 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 0.0e+00 2317.0 1555 76.3
Nn4g24372 Nelumbo nucifera HOM05D001486 ORTHO05D004921 0.0e+00 2300.8 1451 80.5
MSTRG.2128 Avicennia marina HOM05D001486 ORTHO05D004921 0.0e+00 2299.2 1498 76.6
Sed0010499 Sechium edule HOM05D001486 ORTHO05D004921 0.0e+00 2296.2 1492 77.4
Aqoxy3G03310 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 2284.2 1487 77.3
ClCG07G005610 Citrullus lanatus HOM05D001486 ORTHO05D004921 0.0e+00 2274.6 1482 76.9
SalBow2G2685 Salvia bowleyana HOM05D001486 ORTHO05D004921 0.0e+00 2274.2 1533 75.0
Migut.E00481 Erythranthe guttata HOM05D001486 ORTHO05D004921 0.0e+00 2270.4 1495 76.3
Aqoxy7G03241 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 2268.0 1487 76.8
Rhsim09G0089500 Rhododendron simsii HOM05D001486 ORTHO05D004921 0.0e+00 2263.4 1570 74.6
CsaV3_5G015740 Cucumis sativus L. HOM05D001486 ORTHO05D004921 0.0e+00 2261.9 1492 76.1
MELO3C026441.2 Cucumis melo HOM05D001486 ORTHO05D004921 0.0e+00 2259.6 1491 76.1
Cc04_g10510 Coffea canephora HOM05D001486 ORTHO05D004921 0.0e+00 2254.9 1498 76.6
CAN.G149.16 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 2253.4 1498 75.6
SGA_v2.0_scaffold23G10214 Striga asiatica HOM05D001486 ORTHO05D004921 0.0e+00 2251.1 1494 76.3
Sopen07g004030 Solanum pennellii HOM05D001486 ORTHO05D004921 0.0e+00 2249.6 1497 75.8
Solyc07g008160.3 Solanum lycopersicum HOM05D001486 ORTHO05D004921 0.0e+00 2245.7 1501 75.7
EL10Ac3g06288 Beta vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 2241.8 1497 76.6
Cpa.g.sc2.194 Carica papaya HOM05D001486 ORTHO05D004921 0.0e+00 2233.4 1501 76.4
DCAR_007329 Daucus carota HOM05D001486 ORTHO05D004921 0.0e+00 2215.3 1498 74.5
THA.LOC104823681 Tarenaya hassleriana HOM05D001486 ORTHO05D004921 0.0e+00 2206.0 1489 75.8
Ah.13g072990 Amaranthus hybridus HOM05D001486 ORTHO05D004921 0.0e+00 2186.8 1496 74.5
Hund13366 Selenicereus undatus HOM05D001486 ORTHO05D004921 0.0e+00 2178.3 1555 72.9
Oeu064208.1 Olea europaea HOM05D001486 ORTHO05D004921 0.0e+00 2166.0 1498 73.3
AL1G26870 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 0.0e+00 2158.6 1494 74.4
Thhalv10006562m.g Eutrema salsugineum HOM05D001486 ORTHO05D004921 0.0e+00 2158.6 1489 74.7
HanXRQChr08g0212501 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 2154.8 1494 72.8
ECA233G0786 Erigeron canadensis HOM05D001486 ORTHO05D004921 0.0e+00 2149.8 1484 72.8
Sc11g0004180 Simmondsia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2149.4 1499 73.7
AT1G14850 Arabidopsis thaliana HOM05D001486 ORTHO05D004921 0.0e+00 2147.5 1493 73.6
CARHR015390 Cardamine hirsuta HOM05D001486 ORTHO05D004921 0.0e+00 2139.0 1493 73.4
CiPaw.06G051900 Carya illinoinensis HOM05D001486 ORTHO05D004921 0.0e+00 2137.5 1302 83.8
Carub.0001s1464 Capsella rubella HOM05D001486 ORTHO05D004921 0.0e+00 2137.1 1491 73.2
AUR62002589 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 2135.1 1482 73.2
Sp1g13290 Schrenkiella parvula HOM05D001486 ORTHO05D004921 0.0e+00 2134.0 1489 73.7
BcaB02g06554 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2129.0 1491 73.4
C05p12830 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2125.1 1501 73.3
BcaC05g25406 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2124.7 1491 73.3
BraA09t41545Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 2124.7 1500 73.3
BcaC07g41534 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2124.0 1489 73.7
Dinv10475 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 2121.7 1306 82.8
BolC8t52091H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 2119.0 1497 73.3
C08p45360 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2118.2 1499 73.2
BolC5t30028H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 2116.7 1501 72.8
A09p61750 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2116.3 1496 73.3
PSO782G0822 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 2112.4 1493 71.9
BcaB08g34420 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2111.3 1485 73.1
PSO063G3102 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 2108.6 1495 71.6
BraA06t24267Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 2103.6 1501 72.4
Haze_10881 Corylus avellana HOM05D001486 ORTHO05D004921 0.0e+00 2098.6 1590 70.7
Lsat_1_v5_gn_8_46521 Lactuca sativa HOM05D001486 ORTHO05D004921 0.0e+00 2095.1 1474 72.5
AUR62030013 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 2080.8 1576 69.1
Gohir.A03G115400 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 2073.5 1309 81.0
Dinv07730 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 2054.6 1277 80.6
Aa31LG1G260 Aethionema arabicum HOM05D001486 ORTHO05D004921 0.0e+00 2041.9 1463 72.0
ATR0753G157 Amborella trichopoda HOM05D001486 ORTHO05D004921 0.0e+00 2013.0 1506 69.8
Hma1.2p1_0277F.1_g111740 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1953.3 1393 73.9
CAN.G601.2 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 1917.1 1304 74.8
Hma1.2p1_0705F.1_g206910 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1913.7 1225 79.3
HPP92_002282 Vanilla planifolia HOM05D001486 ORTHO05D004921 0.0e+00 1901.7 1481 65.6
Os06g0305200 Oryza sativa ssp. japonica HOM05D001486 ORTHO05D004921 0.0e+00 1896.3 1485 64.9
A06p10890 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1866.3 1371 71.0
Peaxi162Scf00376g00816 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1841.6 1445 66.9
HanXRQChr12g0363231 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 1818.9 1668 59.2
Zm00001eb009110 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1796.2 1435 63.8
TAR629G0611 Trochodendron aralioides HOM05D001486 ORTHO05D004921 0.0e+00 1642.5 988 82.9
Mapoly0035s0137 Marchantia polymorpha HOM05D001486 ORTHO05D004921 0.0e+00 1631.7 1520 56.9
Pp3c8_3720 Physcomitrium patens HOM05D001486 ORTHO05D004921 0.0e+00 1597.4 1526 56.3
Peaxi162Scf01391g00116 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1525.0 1422 59.4
Lj1g0014898 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 1519.6 1087 73.3
Nitab4.5_0004576g0040 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1424.8 1372 57.7
Zm00001eb399840 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1422.1 1213 60.9
Nitab4.5_0010421g0010 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1364.0 1372 56.2
AagrBONN_evm.TU.Sc2ySwM_362.1455 Anthoceros agrestis HOM05D001486 ORTHO05D004921 0.0e+00 1360.9 1297 55.9
MD16G1018500 Malus domestica HOM05D001486 ORTHO05D004921 0.0e+00 1228.0 746 84.3
GSVIVG01011662001 Vitis vinifera HOM05D001486 ORTHO05D004921 0.0e+00 1194.9 739 83.8
Peaxi162Scf01152g00010 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1167.1 1284 53.3
SEGI_07920 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 4.8e-304 1048.5 848 63.1
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 7.1e-271 938.3 779 64.2
Peaxi162Scf01152g00113 Petunia axillaris HOM05D001486 ORTHO05D004921 7.1e-255 885.2 926 55.3
unitig_27.g25159 Utricularia gibba HOM05D001486 ORTHO05D004921 1.6e-254 884.0 714 65.1
CDE06G1861 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 1.1e-239 834.7 579 70.6
unitig_27.g25160 Utricularia gibba HOM05D001486 ORTHO05D004921 1.2e-209 734.9 609 62.2
CDE06G1153 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 2.2e-208 730.7 598 64.9
MD16G1018600 Malus domestica HOM05D001486 ORTHO05D004921 4.8e-203 713.0 482 80.5
Carub.0127s0003 Capsella rubella HOM05D001486 ORTHO05D004921 2.2e-195 687.6 893 46.4
GSVIVG01011661001 Vitis vinifera HOM05D001486 ORTHO05D004921 1.0e-189 668.7 363 86.8
TAR629G0795 Trochodendron aralioides HOM05D001486 ORTHO05D004921 1.3e-187 661.8 442 80.1
ECA247G0951 Erigeron canadensis HOM05D001486 ORTHO05D004921 2.5e-175 620.9 741 47.6
AL1G32070 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 1.5e-159 568.5 473 63.2
RcHm_v2.0_Chr2g0167011 Rosa chinensis HOM05D001486 ORTHO05D004921 8.3e-155 552.7 582 56.0
CDE07G1854 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 4.3e-127 460.7 776 40.1
MD16G1018800 Malus domestica HOM05D001486 ORTHO05D004921 3.4e-108 397.9 218 93.1
MCO15G435 Micromonas commoda HOM05D001486 ORTHO05D004921 1.5e-100 372.5 1827 25.5
PRCOL_00002396 Prasinoderma coloniale HOM05D001486 ORTHO05D004921 2.9e-99 368.2 1588 27.6
CDE07G0203 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 9.4e-98 363.2 445 47.6
SEGI_12334 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 1.8e-93 349.0 397 53.7
Cre09.g394350 Chlamydomonas reinhardtii HOM05D001486 ORTHO05D004921 4.5e-92 344.4 1612 26.1
SEGI_06977 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 2.1e-81 308.9 224 68.8
vmacro04889 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 6.7e-80 303.9 238 68.1
AL1G32080 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 1.4e-77 296.2 230 66.1
vmacro09906 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 2.0e-76 292.4 273 60.8
FvH4_1g18130 Fragaria vesca HOM05D001486 ORTHO05D004921 1.2e-73 283.1 155 82.6
CAN.G601.1 Capsicum annuum HOM05D001486 ORTHO05D004921 6.8e-72 277.3 152 84.2
Zm00001eb255180 Zea mays HOM05D001486 ORTHO05D004921 1.4e-69 269.6 195 69.2
SGA_v2.0_scaffold23G10209 Striga asiatica HOM05D001486 ORTHO05D004921 7.5e-47 194.1 102 88.2
CSS0012816 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 4.1e-45 188.3 189 57.1
Pp3c3_36410 Physcomitrium patens HOM05D001486 ORTHO05D004921 4.6e-44 184.9 190 53.2
RcHm_v2.0_Chr2g0167021 Rosa chinensis HOM05D001486 ORTHO05D004921 4.7e-41 174.9 218 52.8
CARHR227050 Cardamine hirsuta HOM05D001486 ORTHO05D004921 3.4e-39 168.7 159 54.7
Zm00001eb235300 Zea mays HOM05D001486 ORTHO05D004921 1.7e-35 156.4 129 62.0
Zm00001eb201400 Zea mays HOM05D001486 ORTHO05D004921 3.0e-35 155.6 131 63.4
AL2G18360 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 1.6e-33 149.8 344 33.7
Rhsim12G0118300 Rhododendron simsii HOM05D001486 ORTHO05D004921 5.4e-29 134.8 101 73.3
BcaC09g49263 Brassica carinata HOM05D001486 ORTHO05D012131 2.7e-28 132.5 107 64.5
BcaC01g04114 Brassica carinata HOM05D001486 ORTHO05D012131 4.6e-28 131.7 123 56.1
Cfa024881 Carpinus fangiana HOM05D005623 ORTHO05D007130 2.4e-24 119.4 371 27.0
ClCG01G015310 Citrullus lanatus HOM05D001486 ORTHO05D004921 2.4e-24 119.4 56 92.9
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 9.9e-23 114.0 67 80.6
SEGI_12550 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 1.1e-21 110.5 65 75.4
AL3G34910 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 4.8e-17 95.1 133 42.9
GSVIVG01001572001 Vitis vinifera HOM05D001486 ORTHO05D004921 3.1e-16 92.4 61 82.0
GSVIVG01026805001 Vitis vinifera HOM05D001486 ORTHO05D004921 5.3e-16 91.7 70 64.3
Hma1.2p1_0277F.1_g111730 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 9.0e-16 90.9 53 83.0
Hma1.2p1_0705F.1_g206905 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 9.0e-16 90.9 53 83.0
FvH4_4g10520 Fragaria vesca HOM05D002057 ORTHO05D004921 3.3e-10 72.4 34 94.1
Zm00001eb334690 Zea mays HOM05D001486 ORTHO05D037216 7.4e-10 71.2 54 66.7
CSS0014875 Camellia sinensis var. sinensis HOM05D014252 ORTHO05D004921 1.1e-08 67.4 40 80.0
SEGI_21189 Sequoiadendron giganteum HOM05D001486 ORTHO05D037216 1.3e-06 60.5 53 60.4


User provided reference genes

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