Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G174900 Prunus persica HOM05D001988 ORTHO05D004985 0.0e+00 1446.8 719 100.0
MD04G1025400 Malus domestica HOM05D001988 ORTHO05D004985 1.5e-298 1029.2 713 73.5
FAN21G2649 Fragaria x ananassa HOM05D001988 ORTHO05D004985 1.3e-259 899.8 720 65.7
FvH4_3g26291 Fragaria vesca HOM05D001988 ORTHO05D004985 4.0e-256 888.3 752 63.0
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 2.6e-255 885.6 752 62.9
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 3.9e-251 871.7 713 64.7
Cfa008981 Carpinus fangiana HOM05D001988 ORTHO05D004985 2.8e-241 839.0 729 61.2
FAN25G3456 Fragaria x ananassa HOM05D001988 ORTHO05D004985 1.2e-236 823.5 679 65.2
QL03p063402 Quercus lobata HOM05D001988 ORTHO05D004985 3.0e-227 792.3 740 57.7
QL03p064038 Quercus lobata HOM05D001988 ORTHO05D004985 3.0e-227 792.3 740 57.7
Haze_12013 Corylus avellana HOM05D001988 ORTHO05D004985 6.5e-222 774.6 867 51.6
Eucgr.B03445 Eucalyptus grandis HOM05D001988 ORTHO05D004985 3.2e-221 772.3 728 55.9
Manes.01G185700 Manihot esculenta HOM05D001988 ORTHO05D004985 4.0e-211 738.8 742 55.1
CANSAT54G1389 Cannabis sativa HOM05D001988 ORTHO05D004985 3.8e-206 722.2 754 53.4
Ciclev10030768m.g Citrus clementina HOM05D001988 ORTHO05D004985 3.8e-206 722.2 762 53.0
CiPaw.05G135300 Carya illinoinensis HOM05D001988 ORTHO05D004985 1.0e-203 714.1 601 62.1
Actinidia19875 Actinidia chinensis HOM05D001988 ORTHO05D004985 1.8e-203 713.4 723 53.9
RcHm_v2.0_Chr5g0048641 Rosa chinensis HOM05D001988 ORTHO05D004985 6.8e-203 711.4 537 67.8
Rhsim12G0063800 Rhododendron simsii HOM05D001988 ORTHO05D004985 8.8e-203 711.1 734 53.7
GSVIVG01019982001 Vitis vinifera HOM05D001988 ORTHO05D004985 2.0e-202 709.9 714 52.9
Glyma.11G111300 Glycine max HOM05D001988 ORTHO05D004985 6.3e-201 704.9 746 51.6
ClCG11G010950 Citrullus lanatus HOM05D001988 ORTHO05D004985 1.4e-200 703.7 745 53.4
RcHm_v2.0_Chr7g0220021 Rosa chinensis HOM05D001988 ORTHO05D004985 1.4e-200 703.7 538 67.3
vmacro01260 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 4.5e-199 698.7 732 53.0
Cpa.g.sc128.24 Carica papaya HOM05D001988 ORTHO05D004985 5.5e-197 691.8 724 51.8
VMungo1127G0715 Vigna mungo HOM05D001988 ORTHO05D004985 8.9e-195 684.5 726 52.1
Sabra10G0129300 Salix brachista HOM05D001988 ORTHO05D004985 1.2e-194 684.1 745 51.5
Sed0003814 Sechium edule HOM05D001988 ORTHO05D004985 1.2e-194 684.1 741 51.7
Phvul.011G039300 Phaseolus vulgaris HOM05D001988 ORTHO05D004985 4.4e-194 682.2 731 51.8
Duzib251G0871 Durio zibethinus HOM05D001988 ORTHO05D004985 3.7e-193 679.1 744 51.7
MELO3C008752.2 Cucumis melo HOM05D001988 ORTHO05D004985 1.2e-191 674.1 757 51.5
Thecc.02G346500 Theobroma cacao HOM05D001988 ORTHO05D004985 2.0e-191 673.3 752 51.2
CSS0030030 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D004985 5.9e-191 671.8 722 52.4
PGR102G2417 Punica granatum HOM05D001988 ORTHO05D004985 8.6e-190 667.9 740 51.4
Gohir.D05G304800 Gossypium hirsutum HOM05D001988 ORTHO05D004985 3.6e-188 662.5 747 50.2
Gorai.009G324500 Gossypium raimondii HOM05D001988 ORTHO05D004985 8.0e-188 661.4 747 50.2
Lalb_Chr14g0368981 Lupinus albus HOM05D001988 ORTHO05D004985 1.1e-184 651.0 710 51.7
vmacro01166 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 1.2e-183 647.5 737 50.5
arahy.Tifrunner.gnm1.ann1.41IR6N Arachis hypogaea HOM05D001988 ORTHO05D004985 1.7e-182 643.7 756 48.5
arahy.Tifrunner.gnm1.ann1.8UN484 Arachis hypogaea HOM05D001988 ORTHO05D004985 1.1e-181 641.0 756 48.4
Lj3g0010541 Lotus japonicus HOM05D001988 ORTHO05D004985 1.6e-180 637.1 742 50.0
Lj8A318G47 Lonicera japonica HOM05D001988 ORTHO05D004985 2.1e-180 636.7 711 48.4
Ca_20931_v3 Cicer arietinum L. HOM05D001988 ORTHO05D004985 1.4e-179 634.0 743 48.6
arahy.Tifrunner.gnm1.ann1.AY0VQT Arachis hypogaea HOM05D001988 ORTHO05D004985 2.2e-177 626.7 762 46.9
CsaV3_2G009530 Cucumis sativus L. HOM05D001988 ORTHO05D004985 2.1e-175 620.2 637 53.4
Hund05880 Selenicereus undatus HOM05D001988 ORTHO05D004985 2.1e-175 620.2 723 48.0
Nn4g23157 Nelumbo nucifera HOM05D001988 ORTHO05D004985 6.0e-175 618.6 710 48.5
Gohir.A05G183600 Gossypium hirsutum HOM05D001988 ORTHO05D004985 1.3e-174 617.5 748 48.7
Lsat_1_v5_gn_5_156781 Lactuca sativa HOM05D001988 ORTHO05D004985 2.5e-173 613.2 721 48.7
Psat7g139200 Pisum sativum HOM05D001988 ORTHO05D004985 3.3e-173 612.8 728 47.3
Medtr4g057650 Medicago truncatula HOM05D001988 ORTHO05D004985 2.0e-170 603.6 715 47.3
TPR.G27077 Trifolium pratense HOM05D001988 ORTHO05D004985 9.9e-170 601.3 709 48.7
Peaxi162Scf00217g00713 Petunia axillaris HOM05D001988 ORTHO05D004985 6.4e-169 598.6 703 48.8
HanXRQChr09g0255131 Helianthus annuus HOM05D001988 ORTHO05D004985 1.1e-168 597.8 692 48.4
Nitab4.5_0000428g0180 Nicotiana tabacum HOM05D001988 ORTHO05D004985 2.4e-168 596.7 715 48.4
ECA248G0899 Erigeron canadensis HOM05D001988 ORTHO05D004985 3.2e-168 596.3 721 46.3
Cc09_g03970 Coffea canephora HOM05D001988 ORTHO05D004985 9.2e-168 594.7 697 48.8
TWI53G0339 Tripterygium wilfordii HOM05D001988 ORTHO05D004985 6.0e-167 592.0 710 47.5
HanXRQChr05g0145521 Helianthus annuus HOM05D001988 ORTHO05D004985 2.3e-166 590.1 699 47.5
Nitab4.5_0007649g0010 Nicotiana tabacum HOM05D001988 ORTHO05D004985 2.3e-166 590.1 710 48.0
Lsat_1_v5_gn_8_100701 Lactuca sativa HOM05D001988 ORTHO05D004985 5.6e-165 585.5 699 47.8
SHI13475 Sapria himalayana HOM05D001988 ORTHO05D004985 2.8e-164 583.2 698 47.0
PGSC0003DMG401018705 Solanum tuberosum HOM05D001988 ORTHO05D004985 6.8e-163 578.6 701 47.8
THA.LOC104805159 Tarenaya hassleriana HOM05D001988 ORTHO05D004985 8.9e-163 578.2 718 45.8
Solyc11g071540.2 Solanum lycopersicum HOM05D001988 ORTHO05D004985 4.4e-162 575.9 696 48.1
CAN.G439.30 Capsicum annuum HOM05D001988 ORTHO05D004985 6.4e-161 572.0 696 47.7
TAR629G1399 Trochodendron aralioides HOM05D001988 ORTHO05D004985 6.4e-161 572.0 519 59.2
Medtr4g071660 Medicago truncatula HOM05D001988 ORTHO05D004985 1.1e-160 571.2 700 46.4
Sopen11g029230 Solanum pennellii HOM05D001988 ORTHO05D004985 5.4e-160 568.9 701 47.4
MSTRG.27418 Avicennia marina HOM05D001988 ORTHO05D004985 2.5e-157 560.1 703 46.7
AUR62005788 Chenopodium quinoa HOM05D001988 ORTHO05D004985 3.3e-157 559.7 731 46.6
EL10Ac6g13205 Beta vulgaris HOM05D001988 ORTHO05D004985 4.8e-156 555.8 742 45.1
Lsat_1_v5_gn_4_55321 Lactuca sativa HOM05D001988 ORTHO05D004985 8.1e-156 555.1 719 46.3
ECA234G0637 Erigeron canadensis HOM05D001988 ORTHO05D004985 1.7e-153 547.4 700 45.4
Aa31LG2G7390 Aethionema arabicum HOM05D001988 ORTHO05D004985 1.4e-152 544.3 733 44.6
EL10Ac9g22126 Beta vulgaris HOM05D001988 ORTHO05D004985 7.1e-152 542.0 772 43.5
Migut.F02100 Erythranthe guttata HOM05D001988 ORTHO05D004985 2.7e-151 540.0 695 44.5
Sopen09g001990 Solanum pennellii HOM05D001988 ORTHO05D004985 3.9e-150 536.2 692 45.7
Solyc09g007120.4 Solanum lycopersicum HOM05D001988 ORTHO05D004985 1.1e-149 534.6 692 45.8
TPR.G16225 Trifolium pratense HOM05D001988 ORTHO05D004985 1.9e-149 533.9 702 43.3
Carub.0005s0183 Capsella rubella HOM05D001988 ORTHO05D004985 2.4e-147 526.9 740 43.8
SalBow1G3615 Salvia bowleyana HOM05D001988 ORTHO05D004985 2.6e-146 523.5 691 45.6
Sc11g0001930 Simmondsia chinensis HOM05D001988 ORTHO05D004985 2.4e-144 516.9 713 44.2
Medtr5g067430 Medicago truncatula HOM05D001988 ORTHO05D004985 4.6e-143 512.7 715 43.1
DCAR_007151 Daucus carota HOM05D001988 ORTHO05D004985 1.8e-142 510.8 703 42.4
Ah.05g179340 Amaranthus hybridus HOM05D001988 ORTHO05D004985 5.1e-142 509.2 740 41.6
Aqoxy1G01101 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.5e-141 507.7 712 42.4
SGA_v2.0_scaffold58G20462 Striga asiatica HOM05D001988 ORTHO05D004985 1.8e-139 500.7 702 42.5
AL5G12570 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 6.5e-137 492.3 719 42.8
Dinv16646 Davidia involucrata HOM05D001988 ORTHO05D004985 6.5e-137 492.3 418 60.5
AUR62028773 Chenopodium quinoa HOM05D001988 ORTHO05D004985 7.1e-136 488.8 676 44.7
AT2G02955 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 2.1e-135 487.3 711 42.8
Sp7g05500 Schrenkiella parvula HOM05D001988 ORTHO05D004985 1.0e-134 485.0 723 43.6
Eucgr.B03444 Eucalyptus grandis HOM05D001988 ORTHO05D004985 1.5e-133 481.1 469 56.7
BcaC07g42212 Brassica carinata HOM05D001988 ORTHO05D004985 6.9e-131 472.2 723 41.6
Hma1.2p1_0265F.1_g106750 Hydrangea macrophylla HOM05D001988 ORTHO05D004985 9.0e-131 471.9 420 56.4
Thhalv10027666m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 2.9e-129 466.8 708 42.2
BolC8t52776H Brassica oleracea HOM05D001988 ORTHO05D004985 3.8e-129 466.5 724 42.7
C08p52490 Brassica napus HOM05D001988 ORTHO05D004985 8.4e-129 465.3 721 42.3
Oeu037938.2 Olea europaea HOM05D001988 ORTHO05D004985 3.2e-128 463.4 501 51.1
BraA09t42140Z Brassica rapa HOM05D001988 ORTHO05D004985 2.1e-127 460.7 720 41.8
Migut.I00421 Erythranthe guttata HOM05D001988 ORTHO05D004985 7.9e-127 458.8 709 39.6
A09p68050 Brassica napus HOM05D001988 ORTHO05D004985 2.3e-126 457.2 718 42.5
unitig_60.g25620 Utricularia gibba HOM05D001988 ORTHO05D004985 1.3e-124 451.4 686 40.2
CDE07G0941 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 4.8e-124 449.5 575 43.8
HPP92_021577 Vanilla planifolia HOM05D001988 ORTHO05D004985 3.4e-122 443.4 723 38.9
Potri.010G169500 Populus trichocarpa HOM05D001988 ORTHO05D004985 1.7e-121 441.0 438 54.1
AL6G52060 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 1.2e-119 434.9 682 41.3
PSO017G3571 Papaver somniferum HOM05D001988 ORTHO05D004985 3.4e-114 416.8 682 38.3
MBI19_g09828_MAGBIO Magnolia biondii HOM05D001988 ORTHO05D004985 1.4e-110 404.8 516 45.0
PSO063G4641 Papaver somniferum HOM05D001988 ORTHO05D004985 2.3e-110 404.1 681 37.4
Carub.0006s3640 Capsella rubella HOM05D001988 ORTHO05D004985 9.1e-107 392.1 731 36.7
SEGI_17598 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 1.5e-104 384.8 724 34.5
CARHR145370 Cardamine hirsuta HOM05D001988 ORTHO05D004985 3.0e-102 377.1 507 46.2
SEGI_28471 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 1.4e-99 368.2 703 34.9
Atru.chr11.1785 Acer truncatum HOM05D001988 ORTHO05D004985 3.1e-99 367.1 363 55.4
Zm00001eb284870 Zea mays HOM05D001988 ORTHO05D004985 6.5e-97 359.4 708 33.8
AUR62008859 Chenopodium quinoa HOM05D001988 ORTHO05D004985 4.0e-94 350.1 379 50.4
Oeu007681.1 Olea europaea HOM05D001988 ORTHO05D004985 1.2e-87 328.6 309 54.7
COL.COLO4_23013 Corchorus olitorius HOM05D001988 ORTHO05D004985 3.4e-85 320.5 740 34.1
Pp3c9_8400 Physcomitrium patens HOM05D001988 ORTHO05D004985 1.2e-77 295.4 733 30.3
Thhalv10004418m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 1.3e-76 292.0 377 46.2
Hund25598 Selenicereus undatus HOM05D001988 ORTHO05D004985 1.2e-74 285.4 647 35.1
arahy.Tifrunner.gnm1.ann1.N3HM5N Arachis hypogaea HOM05D001988 ORTHO05D004985 2.0e-74 284.6 403 42.4
Mapoly0075s0087 Marchantia polymorpha HOM05D001988 ORTHO05D004985 1.7e-65 255.0 646 29.4
ATR0782G208 Amborella trichopoda HOM05D001988 ORTHO05D004985 6.8e-62 243.0 399 38.1
AagrBONN_evm.TU.Sc2ySwM_362.1334 Anthoceros agrestis HOM05D001988 ORTHO05D004985 8.3e-60 236.1 798 25.3
PGSC0003DMG400002020 Solanum tuberosum HOM05D001988 ORTHO05D004985 5.4e-59 233.4 175 65.1
RcHm_v2.0_Chr7g0220011 Rosa chinensis HOM05D001988 ORTHO05D004985 4.9e-52 210.3 123 82.1
RcHm_v2.0_Chr5g0048631 Rosa chinensis HOM05D001988 ORTHO05D004985 1.7e-49 201.8 123 80.5
Atru.chr11.1786 Acer truncatum HOM05D001988 ORTHO05D004985 5.6e-48 196.8 142 65.5
Aqoxy5G02833 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 5.2e-46 190.3 241 45.6
Hund25529 Selenicereus undatus HOM05D001988 ORTHO05D004985 3.2e-43 181.0 260 39.6
PSO513G0179 Papaver somniferum HOM05D001988 ORTHO05D004985 5.1e-41 173.7 511 28.2
AagrBONN_evm.TU.Sc2ySwM_362.1335 Anthoceros agrestis HOM05D000001 ORTHO05D000003 8.1e-39 166.4 750 23.5
Actinidia31897 Actinidia chinensis HOM05D001988 ORTHO05D004985 1.4e-35 155.6 240 40.4
Peaxi162Scf00342g00711 Petunia axillaris HOM05D001988 ORTHO05D004985 3.2e-35 154.5 167 48.5
Medtr4g071850 Medicago truncatula HOM05D001988 ORTHO05D004985 1.1e-32 146.0 196 41.3
Aqoxy5G02832 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.9e-32 145.2 242 38.0
Aqoxy5G02834 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 3.0e-25 121.3 109 56.0
SMO239G0039 Selaginella moellendorffii HOM05D001988 ORTHO05D004985 8.7e-25 119.8 148 41.9
CARHR212720 Cardamine hirsuta HOM05D001988 ORTHO05D004985 6.9e-22 110.2 337 29.7
AagrBONN_evm.TU.Sc2ySwM_117.2968 Anthoceros agrestis HOM05D001988 ORTHO05D004985 2.0e-21 108.6 198 32.3
CARHR145380 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.7e-20 105.5 196 34.7
AagrBONN_evm.TU.Sc2ySwM_369.75 Anthoceros agrestis HOM05D001988 ORTHO05D004985 7.9e-18 96.7 370 24.9
Peaxi162Scf00342g00712 Petunia axillaris HOM05D001988 ORTHO05D004985 2.6e-13 81.6 162 38.9
AT1G42615 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 7.6e-13 80.1 143 38.5
EL10As5g23508 Beta vulgaris HOM05D001988 ORTHO05D004985 1.0e-12 79.7 69 53.6
Cfa008983 Carpinus fangiana HOM05D001988 ORTHO05D004985 3.8e-12 77.8 122 41.8
AL7G47160 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 8.5e-12 76.6 61 63.9
CARHR289080 Cardamine hirsuta HOM05D001988 ORTHO05D004985 2.5e-11 75.1 82 53.7
Sp2g13990 Schrenkiella parvula HOM05D001988 ORTHO05D004985 3.2e-11 74.7 223 30.0
CDE06G2098 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 1.2e-10 72.8 335 24.5
Os05g0352700 Oryza sativa ssp. japonica HOM05D001988 ORTHO05D004985 2.3e-09 68.6 178 29.8
BcaC06g34029 Brassica carinata HOM05D001988 ORTHO05D004985 3.0e-09 68.2 76 48.7
arahy.Tifrunner.gnm1.ann1.ZE0ACQ Arachis hypogaea HOM05D000603 ORTHO05D008734 6.7e-09 67.0 77 42.9
Atru.chr11.1787 Acer truncatum HOM05D001988 ORTHO05D004985 3.3e-08 64.7 57 49.1
QL03p063393 Quercus lobata HOM05D001988 ORTHO05D004985 5.7e-08 63.9 59 54.2
BcaC07g42209 Brassica carinata HOM05D001988 ORTHO05D004985 9.7e-08 63.2 109 41.3
MCO03G550 Micromonas commoda HOM05D001988 ORTHO05D004985 9.7e-08 63.2 113 28.3
Nitab4.5_0004699g0020 Nicotiana tabacum HOM05D001988 ORTHO05D004985 1.6e-07 62.4 72 48.6
QL03p064050 Quercus lobata HOM05D001988 ORTHO05D004985 6.9e-06 57.0 59 54.2


User provided reference genes

Program Settings