Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G122000 Prunus persica HOM05D004365 ORTHO05D005123 4.7e-66 254.2 115 100.0
RcHm_v2.0_Chr4g0424591 Rosa chinensis HOM05D004365 ORTHO05D005123 5.8e-64 247.3 115 95.7
CiPaw.01G139700 Carya illinoinensis HOM05D004365 ORTHO05D005123 7.6e-64 246.9 115 94.8
ECA246G3323 Erigeron canadensis HOM05D004365 ORTHO05D005123 9.9e-64 246.5 115 94.8
ClCG05G006460 Citrullus lanatus HOM05D004365 ORTHO05D005123 1.3e-63 246.1 115 93.9
Sed0001961 Sechium edule HOM05D004365 ORTHO05D005123 1.3e-63 246.1 115 93.9
Sed0006030 Sechium edule HOM05D004365 ORTHO05D005123 1.3e-63 246.1 115 93.9
CANSAT54G2312 Cannabis sativa HOM05D004365 ORTHO05D005123 2.9e-63 245.0 115 93.0
Haze_01277 Corylus avellana HOM05D004365 ORTHO05D005123 2.9e-63 245.0 115 93.9
HanXRQChr05g0145921 Helianthus annuus HOM05D004365 ORTHO05D005123 2.9e-63 245.0 115 93.9
MD13G1156200 Malus domestica HOM05D004365 ORTHO05D005123 2.9e-63 245.0 115 94.8
Lsat_1_v5_gn_6_116841 Lactuca sativa HOM05D004365 ORTHO05D005123 3.7e-63 244.6 115 93.0
QL06p011635 Quercus lobata HOM05D004365 ORTHO05D005123 4.9e-63 244.2 114 93.0
Nn4g25611 Nelumbo nucifera HOM05D004365 ORTHO05D005123 8.4e-63 243.4 115 92.2
CSS0008168 Camellia sinensis var. sinensis HOM05D004365 ORTHO05D005123 1.1e-62 243.0 115 93.0
Ciclev10006256m.g Citrus clementina HOM05D004365 ORTHO05D005123 1.1e-62 243.0 115 92.2
Oeu016485.1 Olea europaea HOM05D004365 ORTHO05D005123 1.4e-62 242.7 115 93.0
Lalb_Chr18g0058831 Lupinus albus HOM05D004365 ORTHO05D005123 1.9e-62 242.3 115 91.3
FvH4_4g19480 Fragaria vesca HOM05D004365 ORTHO05D005123 2.4e-62 241.9 115 93.0
FAN07G2773 Fragaria x ananassa HOM05D004365 ORTHO05D005123 2.4e-62 241.9 115 93.0
Actinidia13364 Actinidia chinensis HOM05D004365 ORTHO05D005123 3.2e-62 241.5 115 92.2
Ah.13g072000 Amaranthus hybridus HOM05D004365 ORTHO05D005123 3.2e-62 241.5 115 90.4
TAR365G0998 Trochodendron aralioides HOM05D004365 ORTHO05D005123 4.1e-62 241.1 115 90.4
Aqoxy2G02775 Aquilegia oxysepala HOM05D004365 ORTHO05D005123 5.4e-62 240.7 115 91.3
DCAR_023347 Daucus carota HOM05D004365 ORTHO05D005123 5.4e-62 240.7 115 91.3
unitig_22.g6354 Utricularia gibba HOM05D004365 ORTHO05D005123 5.4e-62 240.7 115 93.9
Hma1.2p1_0013F.1_g008720 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 7.1e-62 240.4 115 90.4
Lj6g0010863 Lotus japonicus HOM05D004365 ORTHO05D005123 7.1e-62 240.4 115 91.3
MD16G1157100 Malus domestica HOM05D004365 ORTHO05D005123 9.2e-62 240.0 115 92.2
MSTRG.21775 Avicennia marina HOM05D004365 ORTHO05D005123 1.2e-61 239.6 115 92.2
Gohir.A01G034300 Gossypium hirsutum HOM05D004365 ORTHO05D005123 1.2e-61 239.6 115 91.3
Gohir.D01G023535 Gossypium hirsutum HOM05D004365 ORTHO05D005123 1.2e-61 239.6 115 91.3
Gorai.002G030000 Gossypium raimondii HOM05D004365 ORTHO05D005123 1.2e-61 239.6 115 91.3
PSO761G0124 Papaver somniferum HOM05D004365 ORTHO05D005123 1.2e-61 239.6 115 92.2
GSVIVG01035016001 Vitis vinifera HOM05D004365 ORTHO05D005123 1.2e-61 239.6 115 90.4
CDE09G0896 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 1.6e-61 239.2 115 91.3
Ca_01870_v3 Cicer arietinum L. HOM05D004365 ORTHO05D005123 1.6e-61 239.2 115 91.3
Phvul.009G256100 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 1.6e-61 239.2 115 91.3
Sc05g0009630 Simmondsia chinensis HOM05D004365 ORTHO05D005123 1.6e-61 239.2 115 90.4
CDE02G0371 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 2.1e-61 238.8 115 90.4
Cc03_g00970 Coffea canephora HOM05D004365 ORTHO05D005123 2.1e-61 238.8 115 91.3
Glyma.09G037400 Glycine max HOM05D004365 ORTHO05D005123 2.1e-61 238.8 115 90.4
Thecc.04G297700 Theobroma cacao HOM05D004365 ORTHO05D005123 2.7e-61 238.4 115 90.4
PSO210G6722 Papaver somniferum HOM05D004365 ORTHO05D005123 4.6e-61 237.7 115 91.3
SMO174G0170 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 4.6e-61 237.7 114 89.5
Nitab4.5_0000647g0090 Nicotiana tabacum HOM05D004365 ORTHO05D005123 6.0e-61 237.3 115 90.4
Peaxi162Scf00164g01133 Petunia axillaris HOM05D004365 ORTHO05D005123 6.0e-61 237.3 115 90.4
Solyc05g053430.3 Solanum lycopersicum HOM05D004365 ORTHO05D005123 6.0e-61 237.3 115 90.4
Sopen05g031930 Solanum pennellii HOM05D004365 ORTHO05D005123 6.0e-61 237.3 115 90.4
PGSC0003DMG400027213 Solanum tuberosum HOM05D004365 ORTHO05D005123 6.0e-61 237.3 115 90.4
TWI73G0828 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 6.0e-61 237.3 115 88.7
THA.LOC104820300 Tarenaya hassleriana HOM05D004365 ORTHO05D005123 7.8e-61 236.9 115 89.6
TPR.G5757 Trifolium pratense HOM05D004365 ORTHO05D005123 7.8e-61 236.9 115 90.4
Duzib052G0793 Durio zibethinus HOM05D004365 ORTHO05D005123 1.0e-60 236.5 115 89.6
Aa31LG8G4020 Aethionema arabicum HOM05D004365 ORTHO05D005123 1.3e-60 236.1 115 89.6
Medtr2g034520 Medicago truncatula HOM05D004365 ORTHO05D005123 1.3e-60 236.1 115 90.4
PGR004G2507 Punica granatum HOM05D004365 ORTHO05D005123 1.3e-60 236.1 115 90.4
SMO364G0316 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 2.3e-60 235.3 115 88.7
HPP92_002026 Vanilla planifolia HOM05D004365 ORTHO05D005123 2.3e-60 235.3 115 89.6
Psat6g078760 Pisum sativum HOM05D004365 ORTHO05D005123 3.0e-60 235.0 115 90.4
Sabra08G0080800 Salix brachista HOM05D004365 ORTHO05D005123 3.0e-60 235.0 115 88.7
AT3G16980 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 3.9e-60 234.6 115 89.6
AL3G29960 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 5.1e-60 234.2 115 88.7
BcaC09g50324 Brassica carinata HOM05D004365 ORTHO05D005123 6.6e-60 233.8 115 87.8
BcaNung00211 Brassica carinata HOM05D004365 ORTHO05D005123 6.6e-60 233.8 115 87.8
A01p21300 Brassica napus HOM05D004365 ORTHO05D005123 6.6e-60 233.8 115 87.8
Potri.008G106900 Populus trichocarpa HOM05D004365 ORTHO05D005123 6.6e-60 233.8 115 87.8
Carub.0003s1673 Capsella rubella HOM05D004365 ORTHO05D005123 8.6e-60 233.4 115 88.7
Thhalv10021989m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 8.6e-60 233.4 115 87.8
Duzib212G0477 Durio zibethinus HOM05D004365 ORTHO05D005123 1.5e-59 232.6 115 87.8
Manes.15G005400 Manihot esculenta HOM05D004365 ORTHO05D005123 1.5e-59 232.6 115 87.8
SEGI_37796 Sequoiadendron giganteum HOM05D004365 ORTHO05D005123 1.5e-59 232.6 115 87.8
Cpa.g.sc9.86 Carica papaya HOM05D004365 ORTHO05D005123 1.9e-59 232.3 115 87.8
Glyma.15G142700 Glycine max HOM05D004365 ORTHO05D005123 1.9e-59 232.3 115 87.8
Mapoly0028s0097 Marchantia polymorpha HOM05D004365 ORTHO05D005123 1.9e-59 232.3 115 87.0
Eucgr.H02666 Eucalyptus grandis HOM05D004365 ORTHO05D005123 2.5e-59 231.9 115 87.0
AL7G38770 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 3.3e-59 231.5 115 87.0
AT4G16265 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 3.3e-59 231.5 115 87.0
Carub.0007s2525 Capsella rubella HOM05D004365 ORTHO05D005123 3.3e-59 231.5 115 87.0
BcaB08g34342 Brassica carinata HOM05D004365 ORTHO05D005123 5.6e-59 230.7 115 86.1
BcaC07g37975 Brassica carinata HOM05D004365 ORTHO05D005123 5.6e-59 230.7 115 86.1
A08p12300 Brassica napus HOM05D004365 ORTHO05D005123 5.6e-59 230.7 115 86.1
BolC8t48354H Brassica oleracea HOM05D004365 ORTHO05D005123 5.6e-59 230.7 115 86.1
Thhalv10026603m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 1.2e-58 229.6 115 86.1
vmacro15189 Vaccinium macrocarpon HOM05D004365 ORTHO05D005123 1.2e-58 229.6 135 78.5
Dinv44302 Davidia involucrata HOM05D004365 ORTHO05D005123 2.1e-58 228.8 115 87.0
Sabra10G0110500 Salix brachista HOM05D004365 ORTHO05D005123 3.6e-58 228.0 115 86.1
Pp3c18_17910 Physcomitrium patens HOM05D004365 ORTHO05D005123 4.7e-58 227.6 115 84.3
CARHR222650 Cardamine hirsuta HOM05D004365 ORTHO05D005123 6.2e-58 227.3 115 84.3
Nitab4.5_0006365g0010 Nicotiana tabacum HOM05D004365 ORTHO05D005123 1.8e-57 225.7 134 77.6
CARHR092230 Cardamine hirsuta HOM05D004365 ORTHO05D005123 2.4e-57 225.3 115 86.1
TWI09G0163 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 4.0e-57 224.6 115 85.2
Zm00001eb088460 Zea mays HOM05D004365 ORTHO05D005123 2.0e-56 222.2 115 81.7
arahy.Tifrunner.gnm1.ann1.79Y4XM Arachis hypogaea HOM05D004365 ORTHO05D005123 9.9e-56 219.9 112 86.6
arahy.Tifrunner.gnm1.ann1.C4ZZV2 Arachis hypogaea HOM05D004365 ORTHO05D005123 9.9e-56 219.9 112 86.6
Migut.N00047 Erythranthe guttata HOM05D004365 ORTHO05D005123 2.2e-55 218.8 105 91.4
Hund03115 Selenicereus undatus HOM05D004365 ORTHO05D005123 3.8e-55 218.0 105 90.5
Hund11961 Selenicereus undatus HOM05D004365 ORTHO05D005123 4.9e-55 217.6 105 90.5
EL10Ac3g05464 Beta vulgaris HOM05D004365 ORTHO05D005123 2.4e-54 215.3 115 82.6
Os03g0102200 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 2.4e-54 215.3 115 80.0
A09p28560 Brassica napus HOM05D004365 ORTHO05D005123 2.7e-53 211.8 113 80.5
BraA09t38417Z Brassica rapa HOM05D004365 ORTHO05D005123 2.7e-53 211.8 113 80.5
Os12g0560400 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 3.5e-53 211.5 105 88.6
BolC1t02605H Brassica oleracea HOM05D004365 ORTHO05D005123 4.6e-53 211.1 105 86.7
SpUn0413_0020 Schrenkiella parvula HOM05D004365 ORTHO05D005123 2.3e-52 208.8 105 85.7
BraA08t33228Z Brassica rapa HOM05D004365 ORTHO05D005123 3.9e-52 208.0 105 84.8
Lalb_Chr08g0234431 Lupinus albus HOM05D004365 ORTHO05D005123 1.9e-51 205.7 112 80.4
arahy.Tifrunner.gnm1.ann1.MX4EIU Arachis hypogaea HOM05D004365 ORTHO05D005123 2.5e-51 205.3 114 75.4
SalBow2G2782 Salvia bowleyana HOM05D004365 ORTHO05D005123 2.5e-51 205.3 128 75.0
Manes.03G202800 Manihot esculenta HOM05D004365 ORTHO05D005123 1.6e-50 202.6 115 78.3
Glyma.07G241200 Glycine max HOM05D004365 ORTHO05D005123 2.8e-50 201.8 115 73.0
BcaC04g21057 Brassica carinata HOM05D004365 ORTHO05D005123 4.8e-50 201.1 112 76.8
C09p36150 Brassica napus HOM05D004365 ORTHO05D005123 6.2e-50 200.7 112 76.8
BolC9t56454H Brassica oleracea HOM05D004365 ORTHO05D005123 6.2e-50 200.7 112 76.8
Lj4g0028172 Lotus japonicus HOM05D004365 ORTHO05D005123 1.1e-49 199.9 115 74.8
Dinv15193 Davidia involucrata HOM05D004365 ORTHO05D005123 2.4e-49 198.7 98 90.8
Phvul.003G112600 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 5.3e-49 197.6 115 72.2
HPP92_005120 Vanilla planifolia HOM05D004365 ORTHO05D005123 5.3e-49 197.6 114 71.9
Sp7g14780 Schrenkiella parvula HOM05D004365 ORTHO05D005123 9.9e-48 193.4 130 68.5
TWI53G1753 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 4.9e-47 191.0 114 71.1
VMungo1215G2752 Vigna mungo HOM05D004365 ORTHO05D005123 9.3e-46 186.8 115 68.7
TWI53G0542 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 3.5e-45 184.9 114 69.3
Mapoly0087s0071 Marchantia polymorpha HOM05D004365 ORTHO05D005123 3.0e-44 181.8 115 67.8
VMungo1309G0143 Vigna mungo HOM05D004365 ORTHO05D005123 8.7e-44 180.3 88 90.9
DCAR_027008 Daucus carota HOM05D004365 ORTHO05D005123 9.6e-43 176.8 180 51.7
AUR62041403 Chenopodium quinoa HOM05D004365 ORTHO05D005123 3.6e-42 174.9 93 83.9
ATR0665G356 Amborella trichopoda HOM05D004365 ORTHO05D005123 2.4e-41 172.2 88 87.5
AUR62016130 Chenopodium quinoa HOM05D004365 ORTHO05D005123 5.3e-41 171.0 249 40.6
Sabra10G0110300 Salix brachista HOM05D004365 ORTHO05D005123 9.0e-41 170.2 115 68.7
FAN12G3053 Fragaria x ananassa HOM05D004365 ORTHO05D005123 1.2e-40 169.9 80 93.8
Os07g0615800 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 3.4e-40 168.3 115 59.1
arahy.Tifrunner.gnm1.ann1.2XVX11 Arachis hypogaea HOM05D004365 ORTHO05D005123 4.5e-40 167.9 114 65.8
FvH4_3g15650 Fragaria vesca HOM05D004365 ORTHO05D005123 7.6e-40 167.2 80 91.2
Rhsim02G0004900 Rhododendron simsii HOM05D004365 ORTHO05D005123 7.6e-40 167.2 90 82.2
TPR.G10905 Trifolium pratense HOM05D004365 ORTHO05D005123 7.6e-40 167.2 88 84.1
SGA_v2.0_scaffold119G32662 Striga asiatica HOM05D004365 ORTHO05D005123 1.3e-39 166.4 84 88.1
FAN12G1077 Fragaria x ananassa HOM05D004365 ORTHO05D005123 2.2e-39 165.6 82 89.0
BraA01t02037Z Brassica rapa HOM05D004365 ORTHO05D005123 3.2e-38 161.8 81 85.2
Atru.chr4.3028 Acer truncatum HOM05D004365 ORTHO05D005123 4.2e-38 161.4 79 86.1
BcaB04g18375 Brassica carinata HOM05D004365 ORTHO05D005123 4.6e-37 157.9 80 83.8
Potri.010G142500 Populus trichocarpa HOM05D004365 ORTHO05D005123 4.6e-37 157.9 94 75.5
Zm00001eb086380 Zea mays HOM05D004365 ORTHO05D005123 3.9e-36 154.8 80 82.5
Zm00001eb138580 Zea mays HOM05D004365 ORTHO05D005123 1.1e-35 153.3 81 80.2
Zm00001eb230190 Zea mays HOM05D004365 ORTHO05D005123 1.5e-35 152.9 81 81.5
COL.COLO4_34649 Corchorus olitorius HOM05D001765 ORTHO05D005123 3.3e-35 151.8 77 85.7
Eucgr.H02672 Eucalyptus grandis HOM05D004365 ORTHO05D005123 5.6e-35 151.0 84 78.6
Haze_26633 Corylus avellana HOM05D004365 ORTHO05D005123 1.5e-32 142.9 110 58.2
MCO01G087 Micromonas commoda HOM05D004365 ORTHO05D005123 7.1e-30 134.0 111 53.2
Zm00001eb270680 Zea mays HOM05D004365 ORTHO05D005123 1.4e-25 119.8 64 82.8
AL7G38230 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 5.3e-25 117.9 61 82.0
AagrBONN_evm.TU.Sc2ySwM_117.3306 Anthoceros agrestis HOM05D004365 ORTHO05D005123 4.2e-22 108.2 114 44.7
Zm00001eb327460 Zea mays HOM05D004365 ORTHO05D005123 9.3e-22 107.1 97 47.4
Hma1.2p1_0096F.1_g047650 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 2.7e-21 105.5 56 80.4
SHI00177 Sapria himalayana HOM05D004365 ORTHO05D005123 3.5e-21 105.1 71 66.2
Cre12.g505750 Chlamydomonas reinhardtii HOM05D004365 ORTHO05D005123 6.1e-21 104.4 113 45.1
Zm00001eb137030 Zea mays HOM05D004365 ORTHO05D005123 1.5e-19 99.8 54 81.5
PRCOL_00000204 Prasinoderma coloniale HOM05D004365 ORTHO05D005123 2.2e-18 95.9 113 44.2
BcaB01g01499 Brassica carinata HOM05D004365 ORTHO05D005123 8.2e-18 94.0 49 79.6
Mapoly0020s0069 Marchantia polymorpha HOM05D004365 ORTHO05D005123 5.3e-17 91.3 117 38.5
Cfa024902 Carpinus fangiana HOM05D004365 ORTHO05D005123 2.6e-16 89.0 64 56.2
Hma1.2p1_0234F.1_g098400 Hydrangea macrophylla HOM05D001088 ORTHO05D005123 4.5e-16 88.2 70 60.0
SMO304G0059 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 3.9e-12 75.1 104 38.5
AagrBONN_evm.TU.Sc2ySwM_344.170 Anthoceros agrestis HOM05D001942 ORTHO05D001996 8.8e-12 73.9 105 36.2
Os11g0676650 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 2.4e-09 65.9 40 70.0
Pp3c15_5550 Physcomitrium patens HOM05D006029 ORTHO05D007439 9.1e-09 63.9 112 32.1
EL10Ac5g10924 Beta vulgaris HOM05D006029 ORTHO05D007439 2.0e-08 62.8 113 28.3
Sc02g0002910 Simmondsia chinensis HOM05D006029 ORTHO05D007439 2.0e-08 62.8 115 28.7
Hund17067 Selenicereus undatus HOM05D006029 ORTHO05D007439 2.9e-07 58.9 115 29.6
Mapoly0122s0031 Marchantia polymorpha HOM05D004365 ORTHO05D253640 1.4e-06 56.6 88 35.2
Ciclev10022957m.g Citrus clementina HOM05D006029 ORTHO05D007439 5.5e-06 54.7 114 28.9


User provided reference genes

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