Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G076500 Prunus persica HOM05D005334 ORTHO05D006560 1.5e-206 722.6 363 100.0
MD01G1042400 Malus domestica HOM05D005334 ORTHO05D006560 1.1e-182 643.3 363 89.0
FAN26G1496 Fragaria x ananassa HOM05D005334 ORTHO05D006560 5.3e-180 634.4 363 86.0
RcHm_v2.0_Chr6g0270301 Rosa chinensis HOM05D005334 ORTHO05D006560 7.7e-179 630.6 363 86.5
RcHm_v2.0_Chr6g0270401 Rosa chinensis HOM05D005334 ORTHO05D006560 1.3e-178 629.8 363 86.2
FAN23G0357 Fragaria x ananassa HOM05D005334 ORTHO05D006560 7.2e-177 624.0 363 85.1
FAN23G0783 Fragaria x ananassa HOM05D005334 ORTHO05D006560 7.2e-177 624.0 363 85.1
FvH4_7g07230 Fragaria vesca HOM05D005334 ORTHO05D006560 9.4e-177 623.6 363 84.3
FvH4_1g19290 Fragaria vesca HOM05D005334 ORTHO05D006560 2.1e-176 622.5 363 84.8
CANSAT01G0836 Cannabis sativa HOM05D005334 ORTHO05D006560 3.0e-167 592.0 364 82.1
Cfa006855 Carpinus fangiana HOM05D005334 ORTHO05D006560 1.1e-166 590.1 364 80.5
Thecc.10G018300 Theobroma cacao HOM05D005334 ORTHO05D006560 1.7e-165 586.3 364 80.8
TWI34G1275 Tripterygium wilfordii HOM05D005334 ORTHO05D006560 4.5e-163 578.2 364 79.1
Haze_03908 Corylus avellana HOM05D005334 ORTHO05D006560 1.3e-162 576.6 357 79.8
Gohir.D12G076300 Gossypium hirsutum HOM05D005334 ORTHO05D006560 1.7e-162 576.2 364 79.4
Hma1.2p1_0964F.1_g242010 Hydrangea macrophylla HOM05D005334 ORTHO05D006560 1.5e-161 573.2 380 75.5
Gorai.008G084700 Gossypium raimondii HOM05D005334 ORTHO05D006560 5.5e-161 571.2 364 79.7
CsaV3_6G044840 Cucumis sativus L. HOM05D005334 ORTHO05D006560 1.2e-160 570.1 363 78.2
Potri.010G189500 Populus trichocarpa HOM05D005334 ORTHO05D006560 2.1e-160 569.3 364 76.4
ClCG01G018260 Citrullus lanatus HOM05D005334 ORTHO05D006560 4.7e-160 568.2 363 78.8
QL06p036434 Quercus lobata HOM05D005334 ORTHO05D006560 1.0e-159 567.0 363 78.2
Duzib128G0185 Durio zibethinus HOM05D005334 ORTHO05D006560 3.0e-159 565.5 374 76.2
GSVIVG01003946001 Vitis vinifera HOM05D005334 ORTHO05D006560 3.0e-159 565.5 362 77.9
MELO3C007703.2 Cucumis melo HOM05D005334 ORTHO05D006560 9.7e-158 560.5 367 76.8
Rhsim04G0113300 Rhododendron simsii HOM05D005334 ORTHO05D006560 2.2e-157 559.3 364 76.1
CiPaw.07G045200 Carya illinoinensis HOM05D005334 ORTHO05D006560 2.8e-157 558.9 365 77.0
Sabra10G0146100 Salix brachista HOM05D005334 ORTHO05D006560 4.8e-157 558.1 386 72.0
Ciclev10008278m.g Citrus clementina HOM05D005334 ORTHO05D006560 1.8e-156 556.2 364 76.6
Manes.10G013400 Manihot esculenta HOM05D005334 ORTHO05D006560 5.3e-156 554.7 364 76.9
Sed0026061 Sechium edule HOM05D005334 ORTHO05D006560 1.1e-153 547.0 366 75.7
Eucgr.A00094 Eucalyptus grandis HOM05D005334 ORTHO05D006560 1.5e-153 546.6 364 74.5
CiPaw.07G045000 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.9e-153 546.2 366 76.0
arahy.Tifrunner.gnm1.ann1.DY9T0P Arachis hypogaea HOM05D005334 ORTHO05D006560 3.2e-153 545.4 364 75.3
Medtr8g007340 Medicago truncatula HOM05D005334 ORTHO05D006560 7.2e-153 544.3 364 75.3
Glyma.13G008300 Glycine max HOM05D005334 ORTHO05D006560 2.7e-152 542.3 364 76.1
FAN19G2596 Fragaria x ananassa HOM05D005334 ORTHO05D006560 3.6e-152 542.0 363 76.6
arahy.Tifrunner.gnm1.ann1.D5QNLH Arachis hypogaea HOM05D005334 ORTHO05D006560 6.1e-152 541.2 364 75.3
Lj3g0001207 Lotus japonicus HOM05D005334 ORTHO05D006560 6.1e-152 541.2 364 75.0
Actinidia05483 Actinidia chinensis HOM05D005334 ORTHO05D006560 8.0e-152 540.8 364 73.4
Ciclev10008715m.g Citrus clementina HOM05D005334 ORTHO05D006560 1.4e-151 540.0 367 74.9
vmacro09003 Vaccinium macrocarpon HOM05D005334 ORTHO05D006560 1.4e-151 540.0 364 75.0
Peaxi162Scf00085g00115 Petunia axillaris HOM05D005334 ORTHO05D006560 2.0e-150 536.2 363 72.5
Psat4g223080 Pisum sativum HOM05D005334 ORTHO05D006560 1.3e-149 533.5 365 74.8
Sopen11g005690 Solanum pennellii HOM05D005334 ORTHO05D006560 1.7e-149 533.1 363 71.9
Solyc11g010950.2 Solanum lycopersicum HOM05D005334 ORTHO05D006560 2.8e-149 532.3 363 71.6
CAN.G1813.2 Capsicum annuum HOM05D005334 ORTHO05D006560 4.8e-149 531.6 363 71.6
Nitab4.5_0000402g0140 Nicotiana tabacum HOM05D005334 ORTHO05D006560 4.8e-149 531.6 363 71.9
Phvul.010G046100 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 4.8e-149 531.6 364 74.5
PGSC0003DMG400016186 Solanum tuberosum HOM05D005334 ORTHO05D006560 6.3e-149 531.2 363 71.9
Ca_14799_v3 Cicer arietinum L. HOM05D005334 ORTHO05D006560 1.4e-148 530.0 365 73.2
Phvul.010G045900 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 2.4e-148 529.3 364 74.5
TAR625G0036 Trochodendron aralioides HOM05D005334 ORTHO05D006560 9.1e-148 527.3 360 73.1
ECA233G4415 Erigeron canadensis HOM05D005334 ORTHO05D006560 7.7e-147 524.2 361 71.7
Nn5g29815 Nelumbo nucifera HOM05D005334 ORTHO05D006560 1.0e-146 523.9 364 71.7
CSS0002721 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 1.3e-146 523.5 337 76.3
Cc07_g13790 Coffea canephora HOM05D005334 ORTHO05D006560 5.0e-146 521.5 364 71.4
PGR031G2068 Punica granatum HOM05D005334 ORTHO05D006560 5.0e-146 521.5 369 70.5
Lalb_Chr12g0210501 Lupinus albus HOM05D005334 ORTHO05D006560 1.1e-145 520.4 356 75.3
SGA_v2.0_scaffold45G17221 Striga asiatica HOM05D005334 ORTHO05D006560 2.5e-145 519.2 365 70.4
Sc03g0000510 Simmondsia chinensis HOM05D005334 ORTHO05D006560 4.2e-145 518.5 364 72.5
PSO700G0130 Papaver somniferum HOM05D005334 ORTHO05D006560 1.6e-144 516.5 364 71.7
PSO832G1169 Papaver somniferum HOM05D005334 ORTHO05D006560 1.6e-144 516.5 363 71.9
COL.COLO4_25710 Corchorus olitorius HOM05D005334 ORTHO05D006560 2.1e-144 516.2 307 82.1
VMungo0331G1245 Vigna mungo HOM05D005334 ORTHO05D006560 4.7e-144 515.0 364 71.7
PSO761G0425 Papaver somniferum HOM05D005334 ORTHO05D006560 5.7e-142 508.1 365 71.0
HanXRQChr08g0226671 Helianthus annuus HOM05D005334 ORTHO05D006560 6.3e-141 504.6 363 68.9
MSTRG.3723 Avicennia marina HOM05D005334 ORTHO05D006560 1.1e-140 503.8 365 69.3
SalBow5G3116 Salvia bowleyana HOM05D005334 ORTHO05D006560 1.4e-140 503.4 361 70.9
SalBow5G4670 Salvia bowleyana HOM05D005334 ORTHO05D006560 3.1e-140 502.3 361 70.9
Thhalv10021017m.g Eutrema salsugineum HOM05D005334 ORTHO05D006560 4.5e-139 498.4 363 70.0
CARHR085780 Cardamine hirsuta HOM05D005334 ORTHO05D006560 2.9e-138 495.7 363 69.1
CiPaw.07G049700 Carya illinoinensis HOM05D005334 ORTHO05D006560 2.9e-138 495.7 364 70.6
Aqoxy6G01573 Aquilegia oxysepala HOM05D005334 ORTHO05D006560 4.3e-137 491.9 356 68.8
AT3G11220 Arabidopsis thaliana HOM05D005334 ORTHO05D006560 8.0e-136 487.6 356 69.7
Carub.0003s1053 Capsella rubella HOM05D005334 ORTHO05D006560 3.0e-135 485.7 356 69.9
Lj2C525G9 Lonicera japonica HOM05D005334 ORTHO05D006560 3.0e-135 485.7 365 68.8
BcaC05g29390 Brassica carinata HOM05D005334 ORTHO05D006560 6.8e-135 484.6 364 68.7
A05p38080 Brassica napus HOM05D005334 ORTHO05D006560 6.8e-135 484.6 365 69.3
AUR62003692 Chenopodium quinoa HOM05D005334 ORTHO05D006560 2.6e-134 482.6 366 66.9
AUR62018003 Chenopodium quinoa HOM05D005334 ORTHO05D006560 4.4e-134 481.9 392 63.0
THA.LOC104816551 Tarenaya hassleriana HOM05D005334 ORTHO05D006560 7.5e-134 481.1 363 68.3
C05p56870 Brassica napus HOM05D005334 ORTHO05D006560 1.3e-133 480.3 365 68.8
Sp3g09500 Schrenkiella parvula HOM05D005334 ORTHO05D006560 1.3e-133 480.3 363 67.2
Aa31LG3G4530 Aethionema arabicum HOM05D005334 ORTHO05D006560 1.7e-133 479.9 363 67.2
AL3G22740 Arabidopsis lyrata HOM05D005334 ORTHO05D006560 3.7e-133 478.8 363 68.6
BraA05t22600Z Brassica rapa HOM05D005334 ORTHO05D006560 4.9e-133 478.4 365 68.2
Migut.K00814 Erythranthe guttata HOM05D005334 ORTHO05D006560 4.1e-132 475.3 365 69.3
BolC5t34351H Brassica oleracea HOM05D005334 ORTHO05D006560 6.0e-131 471.5 390 64.1
CiPaw.07G044700 Carya illinoinensis HOM05D005334 ORTHO05D006560 2.1e-128 463.0 364 66.5
FAN03G2380 Fragaria x ananassa HOM05D005334 ORTHO05D006560 2.1e-128 463.0 377 66.6
Atru.chr12.1050 Acer truncatum HOM05D005334 ORTHO05D006560 2.8e-128 462.6 333 71.8
Cpa.g.sc19.179 Carica papaya HOM05D005334 ORTHO05D006560 8.0e-128 461.1 364 67.3
PSO013G0112 Papaver somniferum HOM05D005334 ORTHO05D006560 8.0e-128 461.1 319 73.0
Glyma.03G108600 Glycine max HOM05D005334 ORTHO05D006560 2.1e-123 446.4 305 74.4
Os06g0639600 Oryza sativa ssp. japonica HOM05D005334 ORTHO05D006560 4.3e-121 438.7 366 61.7
Dinv36960 Davidia involucrata HOM05D005334 ORTHO05D006560 2.0e-118 429.9 277 76.5
Lsat_1_v5_gn_6_15620 Lactuca sativa HOM05D005334 ORTHO05D006560 2.0e-118 429.9 363 63.1
Ah.02g123390 Amaranthus hybridus HOM05D005334 ORTHO05D006560 1.4e-116 423.7 360 60.8
unitig_0.g2648 Utricularia gibba HOM05D005334 ORTHO05D006560 2.7e-115 419.5 378 59.0
MBI10_g34777_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 8.6e-114 414.5 340 61.5
Zm00001eb387250 Zea mays HOM05D005334 ORTHO05D006560 8.6e-114 414.5 378 58.5
CDE04G2384 Ceratophyllum demersum HOM05D005334 ORTHO05D006560 2.1e-112 409.8 371 59.6
Hund14075 Selenicereus undatus HOM05D005334 ORTHO05D006560 6.8e-111 404.8 362 59.4
SHI03443 Sapria himalayana HOM05D005334 ORTHO05D006560 1.2e-110 404.1 356 59.3
SEGI_17743 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 2.4e-108 396.4 384 52.9
Gohir.A12G078265 Gossypium hirsutum HOM05D005334 ORTHO05D006560 1.1e-103 380.9 245 78.4
ATR1153G009 Amborella trichopoda HOM05D005334 ORTHO05D006560 2.0e-102 376.7 308 60.7
Prupe.6G206700 Prunus persica HOM05D005334 ORTHO05D006560 2.2e-101 373.2 364 61.0
Thecc.09G278800 Theobroma cacao HOM05D005334 ORTHO05D006560 9.6e-89 331.3 277 62.1
Mapoly0006s0234 Marchantia polymorpha HOM05D005334 ORTHO05D006560 2.8e-88 329.7 382 47.1
Pp3c9_23940 Physcomitrium patens HOM05D005334 ORTHO05D006560 7.1e-84 315.1 379 46.2
Dinv27014 Davidia involucrata HOM05D005334 ORTHO05D006560 6.2e-80 302.0 215 69.3
AagrBONN_evm.TU.Sc2ySwM_117.1770 Anthoceros agrestis HOM05D005334 ORTHO05D006560 6.0e-75 285.4 386 42.5
DCAR_003438 Daucus carota HOM05D005334 ORTHO05D006560 4.1e-71 272.7 361 46.0
Lsat_1_v5_gn_4_105120 Lactuca sativa HOM05D005334 ORTHO05D006560 2.6e-70 270.0 209 64.1
TPR.G5292 Trifolium pratense HOM05D005334 ORTHO05D006560 5.9e-70 268.9 173 77.5
Lj2g0000099 Lotus japonicus HOM05D005334 ORTHO05D006560 2.5e-68 263.5 167 77.8
Lj6g0009802 Lotus japonicus HOM05D005334 ORTHO05D006560 5.5e-68 262.3 198 68.7
TPR.G11130 Trifolium pratense HOM05D005334 ORTHO05D006560 7.2e-68 261.9 195 66.7
BcaB06g25638 Brassica carinata HOM05D005334 ORTHO05D006560 2.2e-61 240.4 170 72.4
Lsat_1_v5_gn_8_12861 Lactuca sativa HOM05D005334 ORTHO05D006560 1.1e-60 238.0 160 72.5
RcHm_v2.0_Chr2g0110581 Rosa chinensis HOM05D005334 ORTHO05D006560 8.0e-51 205.3 308 43.2
Lsat_1_v5_gn_5_29040 Lactuca sativa HOM05D005334 ORTHO05D006560 1.0e-50 204.9 199 52.8
CiPaw.07G044400 Carya illinoinensis HOM05D005334 ORTHO05D006560 3.9e-50 203.0 144 72.9
CSS0046374 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 6.7e-50 202.2 122 84.4
MD01G1042700 Malus domestica HOM05D005334 ORTHO05D006560 7.4e-49 198.7 165 66.1
CSS0016906 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 1.7e-48 197.6 122 82.8
Lsat_1_v5_gn_4_67481 Lactuca sativa HOM05D005334 ORTHO05D006560 3.8e-45 186.4 141 68.8
SMO146G0066 Selaginella moellendorffii HOM05D005334 ORTHO05D006560 9.7e-41 171.8 250 42.4
CSS0017464 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 1.6e-38 164.5 122 72.1
SEGI_40300 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 3.8e-37 159.8 176 46.6
Lsat_1_v5_gn_1_79261 Lactuca sativa HOM05D005334 ORTHO05D006560 4.2e-36 156.4 141 61.0
ATR0022G031 Amborella trichopoda HOM05D005334 ORTHO05D006560 4.0e-34 149.8 150 55.3
HPP92_008022 Vanilla planifolia HOM05D005334 ORTHO05D006560 1.6e-27 127.9 114 58.8
CSS0026696 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 8.9e-26 122.1 72 81.9
MBI03_g45376_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 3.7e-24 116.7 87 65.5
Cre03.g196000 Chlamydomonas reinhardtii HOM05D005334 ORTHO05D006560 5.6e-20 102.8 388 25.0
HPP92_008021 Vanilla planifolia HOM05D005334 ORTHO05D006560 9.5e-20 102.1 71 73.2
MBI03_g46739_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 8.9e-18 95.5 77 59.7
CBR_g30786 Chara braunii HOM05D000019 ORTHO05D000002 9.2e-15 85.5 130 36.2
MCO12G220 Micromonas commoda HOM05D005334 ORTHO05D006560 2.8e-11 73.9 295 23.7


User provided reference genes

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