Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c9_23940 Physcomitrium patens HOM05D005334 ORTHO05D006560 3.7e-219 764.6 396 100.0
Mapoly0006s0234 Marchantia polymorpha HOM05D005334 ORTHO05D006560 4.5e-116 422.2 393 57.3
AagrBONN_evm.TU.Sc2ySwM_117.1770 Anthoceros agrestis HOM05D005334 ORTHO05D006560 6.5e-107 391.7 431 50.3
SEGI_17743 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 7.0e-101 371.7 393 51.7
TWI34G1275 Tripterygium wilfordii HOM05D005334 ORTHO05D006560 6.1e-89 332.0 372 47.8
Nn5g29815 Nelumbo nucifera HOM05D005334 ORTHO05D006560 2.3e-88 330.1 385 48.3
Peaxi162Scf00085g00115 Petunia axillaris HOM05D005334 ORTHO05D006560 4.4e-87 325.9 360 48.9
Potri.010G189500 Populus trichocarpa HOM05D005334 ORTHO05D006560 4.4e-87 325.9 350 49.1
TAR625G0036 Trochodendron aralioides HOM05D005334 ORTHO05D006560 9.8e-87 324.7 362 47.5
PSO832G1169 Papaver somniferum HOM05D005334 ORTHO05D006560 1.3e-86 324.3 366 48.1
Sabra10G0146100 Salix brachista HOM05D005334 ORTHO05D006560 2.2e-86 323.6 350 49.1
MD01G1042400 Malus domestica HOM05D005334 ORTHO05D006560 2.9e-86 323.2 358 47.8
HanXRQChr08g0226671 Helianthus annuus HOM05D005334 ORTHO05D006560 4.9e-86 322.4 376 46.5
CAN.G1813.2 Capsicum annuum HOM05D005334 ORTHO05D006560 6.4e-86 322.0 375 46.7
Solyc11g010950.2 Solanum lycopersicum HOM05D005334 ORTHO05D006560 8.3e-86 321.6 370 47.0
PSO700G0130 Papaver somniferum HOM05D005334 ORTHO05D006560 1.1e-85 321.2 365 47.7
CsaV3_6G044840 Cucumis sativus L. HOM05D005334 ORTHO05D006560 1.4e-85 320.9 362 47.0
CANSAT01G0836 Cannabis sativa HOM05D005334 ORTHO05D006560 1.9e-85 320.5 377 47.2
Sopen11g005690 Solanum pennellii HOM05D005334 ORTHO05D006560 2.4e-85 320.1 364 47.3
Haze_03908 Corylus avellana HOM05D005334 ORTHO05D006560 3.2e-85 319.7 351 48.4
ECA233G4415 Erigeron canadensis HOM05D005334 ORTHO05D006560 3.2e-85 319.7 376 46.0
Rhsim04G0113300 Rhododendron simsii HOM05D005334 ORTHO05D006560 7.0e-85 318.5 360 48.9
PSO761G0425 Papaver somniferum HOM05D005334 ORTHO05D006560 9.2e-85 318.2 361 48.8
Cfa006855 Carpinus fangiana HOM05D005334 ORTHO05D006560 1.2e-84 317.8 351 47.9
Nitab4.5_0000402g0140 Nicotiana tabacum HOM05D005334 ORTHO05D006560 1.2e-84 317.8 372 46.5
GSVIVG01003946001 Vitis vinifera HOM05D005334 ORTHO05D006560 1.2e-84 317.8 359 47.4
CiPaw.07G045200 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.6e-84 317.4 369 45.8
Os06g0639600 Oryza sativa ssp. japonica HOM05D005334 ORTHO05D006560 1.6e-84 317.4 384 47.9
Sc03g0000510 Simmondsia chinensis HOM05D005334 ORTHO05D006560 2.7e-84 316.6 354 48.6
PGSC0003DMG400016186 Solanum tuberosum HOM05D005334 ORTHO05D006560 2.7e-84 316.6 375 46.7
QL06p036434 Quercus lobata HOM05D005334 ORTHO05D006560 3.5e-84 316.2 352 47.4
ClCG01G018260 Citrullus lanatus HOM05D005334 ORTHO05D006560 6.0e-84 315.5 354 46.3
Gohir.D12G076300 Gossypium hirsutum HOM05D005334 ORTHO05D006560 6.0e-84 315.5 346 48.3
RcHm_v2.0_Chr6g0270401 Rosa chinensis HOM05D005334 ORTHO05D006560 6.0e-84 315.5 360 47.5
Actinidia05483 Actinidia chinensis HOM05D005334 ORTHO05D006560 1.0e-83 314.7 373 47.7
FvH4_7g07230 Fragaria vesca HOM05D005334 ORTHO05D006560 1.0e-83 314.7 357 47.6
MELO3C007703.2 Cucumis melo HOM05D005334 ORTHO05D006560 1.7e-83 313.9 368 46.2
Hma1.2p1_0964F.1_g242010 Hydrangea macrophylla HOM05D005334 ORTHO05D006560 1.7e-83 313.9 376 47.1
Aqoxy6G01573 Aquilegia oxysepala HOM05D005334 ORTHO05D006560 2.3e-83 313.5 357 48.2
Gorai.008G084700 Gossypium raimondii HOM05D005334 ORTHO05D006560 3.0e-83 313.2 345 47.5
Prupe.1G076500 Prunus persica HOM05D005334 ORTHO05D006560 3.0e-83 313.2 379 46.2
FAN26G1496 Fragaria x ananassa HOM05D005334 ORTHO05D006560 3.9e-83 312.8 360 47.5
RcHm_v2.0_Chr6g0270301 Rosa chinensis HOM05D005334 ORTHO05D006560 6.6e-83 312.0 360 47.2
Phvul.010G046100 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 8.6e-83 311.6 349 47.6
CiPaw.07G045000 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.1e-82 311.2 369 45.3
Thecc.10G018300 Theobroma cacao HOM05D005334 ORTHO05D006560 1.1e-82 311.2 360 47.5
Sed0026061 Sechium edule HOM05D005334 ORTHO05D006560 1.9e-82 310.5 372 45.7
Duzib128G0185 Durio zibethinus HOM05D005334 ORTHO05D006560 2.5e-82 310.1 377 46.9
Manes.10G013400 Manihot esculenta HOM05D005334 ORTHO05D006560 3.3e-82 309.7 361 47.9
Ciclev10008278m.g Citrus clementina HOM05D005334 ORTHO05D006560 9.5e-82 308.1 380 47.1
VMungo0331G1245 Vigna mungo HOM05D005334 ORTHO05D006560 9.5e-82 308.1 353 46.5
Lj3g0001207 Lotus japonicus HOM05D005334 ORTHO05D006560 1.2e-81 307.8 365 46.0
Phvul.010G045900 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 1.2e-81 307.8 349 46.7
Ca_14799_v3 Cicer arietinum L. HOM05D005334 ORTHO05D006560 3.6e-81 306.2 364 45.6
Cc07_g13790 Coffea canephora HOM05D005334 ORTHO05D006560 4.7e-81 305.8 373 45.6
FvH4_1g19290 Fragaria vesca HOM05D005334 ORTHO05D006560 4.7e-81 305.8 360 46.9
FAN23G0357 Fragaria x ananassa HOM05D005334 ORTHO05D006560 4.7e-81 305.8 359 46.8
FAN23G0783 Fragaria x ananassa HOM05D005334 ORTHO05D006560 4.7e-81 305.8 359 46.8
SalBow5G3116 Salvia bowleyana HOM05D005334 ORTHO05D006560 8.0e-81 305.1 374 46.8
arahy.Tifrunner.gnm1.ann1.DY9T0P Arachis hypogaea HOM05D005334 ORTHO05D006560 1.1e-80 304.7 365 45.5
SalBow5G4670 Salvia bowleyana HOM05D005334 ORTHO05D006560 1.1e-80 304.7 374 46.8
arahy.Tifrunner.gnm1.ann1.D5QNLH Arachis hypogaea HOM05D005334 ORTHO05D006560 1.4e-80 304.3 353 45.9
CSS0002721 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 1.4e-80 304.3 332 49.1
Medtr8g007340 Medicago truncatula HOM05D005334 ORTHO05D006560 1.4e-80 304.3 355 45.6
Psat4g223080 Pisum sativum HOM05D005334 ORTHO05D006560 6.8e-80 302.0 356 45.5
Eucgr.A00094 Eucalyptus grandis HOM05D005334 ORTHO05D006560 8.9e-80 301.6 355 45.9
Lalb_Chr12g0210501 Lupinus albus HOM05D005334 ORTHO05D006560 1.5e-79 300.8 359 46.2
Glyma.13G008300 Glycine max HOM05D005334 ORTHO05D006560 2.0e-79 300.4 350 46.6
PSO013G0112 Papaver somniferum HOM05D005334 ORTHO05D006560 2.0e-79 300.4 341 47.2
vmacro09003 Vaccinium macrocarpon HOM05D005334 ORTHO05D006560 2.0e-79 300.4 371 45.8
PGR031G2068 Punica granatum HOM05D005334 ORTHO05D006560 4.4e-79 299.3 367 45.2
Zm00001eb387250 Zea mays HOM05D005334 ORTHO05D006560 3.7e-78 296.2 404 44.1
Ciclev10008715m.g Citrus clementina HOM05D005334 ORTHO05D006560 4.9e-78 295.8 383 46.5
MSTRG.3723 Avicennia marina HOM05D005334 ORTHO05D006560 4.1e-77 292.7 365 44.7
SGA_v2.0_scaffold45G17221 Striga asiatica HOM05D005334 ORTHO05D006560 2.1e-76 290.4 371 44.2
AUR62003692 Chenopodium quinoa HOM05D005334 ORTHO05D006560 6.0e-76 288.9 375 45.9
Aa31LG3G4530 Aethionema arabicum HOM05D005334 ORTHO05D006560 7.8e-76 288.5 360 45.3
AUR62018003 Chenopodium quinoa HOM05D005334 ORTHO05D006560 7.8e-76 288.5 398 44.0
THA.LOC104816551 Tarenaya hassleriana HOM05D005334 ORTHO05D006560 1.3e-75 287.7 351 45.0
Thhalv10021017m.g Eutrema salsugineum HOM05D005334 ORTHO05D006560 2.3e-75 287.0 360 45.6
BcaC05g29390 Brassica carinata HOM05D005334 ORTHO05D006560 3.9e-75 286.2 360 45.3
Carub.0003s1053 Capsella rubella HOM05D005334 ORTHO05D006560 1.5e-74 284.3 360 45.0
AT3G11220 Arabidopsis thaliana HOM05D005334 ORTHO05D006560 2.5e-74 283.5 375 44.3
COL.COLO4_25710 Corchorus olitorius HOM05D005334 ORTHO05D006560 3.3e-74 283.1 324 47.5
C05p56870 Brassica napus HOM05D005334 ORTHO05D006560 9.5e-74 281.6 361 45.2
BraA05t22600Z Brassica rapa HOM05D005334 ORTHO05D006560 2.1e-73 280.4 361 44.3
CARHR085780 Cardamine hirsuta HOM05D005334 ORTHO05D006560 2.8e-73 280.0 360 43.9
A05p38080 Brassica napus HOM05D005334 ORTHO05D006560 3.6e-73 279.6 361 44.9
CDE04G2384 Ceratophyllum demersum HOM05D005334 ORTHO05D006560 1.1e-72 278.1 397 42.3
Sp3g09500 Schrenkiella parvula HOM05D005334 ORTHO05D006560 1.4e-72 277.7 360 43.3
CiPaw.07G049700 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.2e-71 274.6 369 42.0
Migut.K00814 Erythranthe guttata HOM05D005334 ORTHO05D006560 2.0e-71 273.9 372 43.3
FAN19G2596 Fragaria x ananassa HOM05D005334 ORTHO05D006560 2.0e-71 273.9 358 44.4
AL3G22740 Arabidopsis lyrata HOM05D005334 ORTHO05D006560 2.6e-71 273.5 384 42.7
BolC5t34351H Brassica oleracea HOM05D005334 ORTHO05D006560 7.5e-71 271.9 386 42.5
unitig_0.g2648 Utricularia gibba HOM05D005334 ORTHO05D006560 3.7e-70 269.6 391 43.0
MBI10_g34777_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 4.9e-70 269.2 351 44.2
CiPaw.07G044700 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.9e-69 267.3 352 42.9
Glyma.03G108600 Glycine max HOM05D005334 ORTHO05D006560 5.4e-69 265.8 309 45.6
ATR1153G009 Amborella trichopoda HOM05D005334 ORTHO05D006560 7.8e-68 261.9 321 43.6
Lj2C525G9 Lonicera japonica HOM05D005334 ORTHO05D006560 3.0e-67 260.0 355 43.7
Atru.chr12.1050 Acer truncatum HOM05D005334 ORTHO05D006560 1.1e-66 258.1 351 43.9
SHI03443 Sapria himalayana HOM05D005334 ORTHO05D006560 2.1e-65 253.8 346 42.2
Cpa.g.sc19.179 Carica papaya HOM05D005334 ORTHO05D006560 6.2e-65 252.3 370 41.9
Lsat_1_v5_gn_6_15620 Lactuca sativa HOM05D005334 ORTHO05D006560 2.4e-64 250.4 360 41.1
Dinv36960 Davidia involucrata HOM05D005334 ORTHO05D006560 4.9e-62 242.7 295 46.8
Ah.02g123390 Amaranthus hybridus HOM05D005334 ORTHO05D006560 1.9e-61 240.7 361 40.7
Hund14075 Selenicereus undatus HOM05D005334 ORTHO05D006560 3.4e-55 219.9 359 37.6
FAN03G2380 Fragaria x ananassa HOM05D005334 ORTHO05D006560 4.2e-53 213.0 327 42.5
Gohir.A12G078265 Gossypium hirsutum HOM05D005334 ORTHO05D006560 1.3e-49 201.4 244 44.3
Dinv27014 Davidia involucrata HOM05D005334 ORTHO05D006560 5.6e-42 176.0 241 42.3
SMO146G0066 Selaginella moellendorffii HOM05D005334 ORTHO05D006560 1.1e-40 171.8 277 39.7
DCAR_003438 Daucus carota HOM05D005334 ORTHO05D006560 1.4e-40 171.4 307 35.2
SEGI_40300 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 5.8e-39 166.0 179 50.8
Lsat_1_v5_gn_4_105120 Lactuca sativa HOM05D005334 ORTHO05D006560 1.6e-36 157.9 236 41.5
TPR.G11130 Trifolium pratense HOM05D005334 ORTHO05D006560 4.6e-36 156.4 201 43.8
Thecc.09G278800 Theobroma cacao HOM05D005334 ORTHO05D006560 7.9e-36 155.6 220 40.5
Lj2g0000099 Lotus japonicus HOM05D005334 ORTHO05D006560 2.3e-35 154.1 166 47.0
TPR.G5292 Trifolium pratense HOM05D005334 ORTHO05D006560 4.3e-34 149.8 156 46.8
Lsat_1_v5_gn_8_12861 Lactuca sativa HOM05D005334 ORTHO05D006560 3.7e-33 146.7 162 48.8
Lj6g0009802 Lotus japonicus HOM05D005334 ORTHO05D006560 5.3e-32 142.9 202 42.1
BcaB06g25638 Brassica carinata HOM05D005334 ORTHO05D006560 5.0e-30 136.3 171 40.9
Cre03.g196000 Chlamydomonas reinhardtii HOM05D005334 ORTHO05D006560 3.2e-29 133.7 388 28.9
RcHm_v2.0_Chr2g0110581 Rosa chinensis HOM05D005334 ORTHO05D006560 4.2e-29 133.3 112 55.4
Prupe.6G206700 Prunus persica HOM05D005334 ORTHO05D006560 1.6e-28 131.3 356 29.2
CSS0046374 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 1.9e-26 124.4 108 55.6
CiPaw.07G044400 Carya illinoinensis HOM05D005334 ORTHO05D006560 9.7e-26 122.1 113 54.9
CSS0016906 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 4.8e-25 119.8 108 53.7
Lsat_1_v5_gn_4_67481 Lactuca sativa HOM05D005334 ORTHO05D006560 1.1e-24 118.6 124 52.4
ATR0022G031 Amborella trichopoda HOM05D005334 ORTHO05D006560 6.9e-24 115.9 147 40.8
Lsat_1_v5_gn_1_79261 Lactuca sativa HOM05D005334 ORTHO05D006560 6.9e-24 115.9 101 58.4
CBR_g30786 Chara braunii HOM05D000019 ORTHO05D000002 8.5e-22 109.0 136 43.4
MD01G1042700 Malus domestica HOM05D005334 ORTHO05D006560 1.9e-21 107.8 154 39.0
CSS0017464 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 2.3e-19 100.9 108 50.0
Lsat_1_v5_gn_5_29040 Lactuca sativa HOM05D005334 ORTHO05D006560 5.1e-19 99.8 199 33.7
HPP92_008022 Vanilla planifolia HOM05D005334 ORTHO05D006560 1.5e-18 98.2 110 47.3
CSS0026696 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 4.3e-18 96.7 82 58.5
MBI03_g45376_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 4.8e-17 93.2 89 51.7
MCO12G220 Micromonas commoda HOM05D005334 ORTHO05D006560 2.0e-15 87.8 392 26.3
MBI03_g46739_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 1.5e-10 71.6 68 48.5
HPP92_008021 Vanilla planifolia HOM05D005334 ORTHO05D006560 9.7e-10 68.9 75 48.0
Pp3c15_22810 Physcomitrium patens HOM05D005334 ORTHO05D006560 8.2e-09 65.9 50 64.0


User provided reference genes

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