Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c9_11970 Physcomitrium patens HOM05D003639 ORTHO05D004246 1.2e-223 780.0 542 100.0
AagrBONN_evm.TU.Sc2ySwM_117.1154 Anthoceros agrestis HOM05D003639 ORTHO05D004246 7.8e-111 405.2 309 68.9
CBR_g723 Chara braunii HOM05D003639 ORTHO05D004246 4.5e-98 362.8 515 65.4
Mapoly0061s0123 Marchantia polymorpha HOM05D003639 ORTHO05D004246 3.2e-96 356.7 492 66.7
Mapoly0014s0154 Marchantia polymorpha HOM05D003639 ORTHO05D004246 9.9e-90 335.1 299 60.5
Haze_19749 Corylus avellana HOM05D003639 ORTHO05D004246 1.7e-89 334.3 340 58.5
Medtr3g045130 Medicago truncatula HOM05D003639 ORTHO05D004246 7.9e-87 325.5 339 57.2
Medtr5g022690 Medicago truncatula HOM05D003639 ORTHO05D004246 2.6e-74 283.9 320 54.1
SEGI_17823 Sequoiadendron giganteum HOM05D003639 ORTHO05D004246 1.3e-73 281.6 328 50.3
MELO3C026433.2 Cucumis melo HOM05D003639 ORTHO05D004246 6.5e-73 279.3 500 61.2
CDE04G0356 Ceratophyllum demersum HOM05D003639 ORTHO05D004246 1.9e-72 277.7 466 64.8
CsaV3_6G036200 Cucumis sativus L. HOM05D003639 ORTHO05D004246 2.5e-72 277.3 500 61.0
ClCG08G008940 Citrullus lanatus HOM05D003639 ORTHO05D004246 5.5e-72 276.2 496 61.1
ATR0665G145 Amborella trichopoda HOM05D003639 ORTHO05D004246 4.6e-71 273.1 511 58.1
Nn7g37752 Nelumbo nucifera HOM05D003639 ORTHO05D004246 7.9e-71 272.3 337 50.1
PGR004G0521 Punica granatum HOM05D003639 ORTHO05D004246 1.0e-70 271.9 498 57.4
TAR369G0628 Trochodendron aralioides HOM05D003639 ORTHO05D004246 2.3e-70 270.8 341 50.1
Aqoxy3G00063 Aquilegia oxysepala HOM05D003639 ORTHO05D004246 2.5e-69 267.3 308 51.0
COL.COLO4_24957 Corchorus olitorius HOM05D003639 ORTHO05D004246 2.5e-69 267.3 497 59.8
Migut.J01707 Erythranthe guttata HOM05D003639 ORTHO05D004246 2.5e-69 267.3 338 50.0
Sc19g0008460 Simmondsia chinensis HOM05D003639 ORTHO05D004246 5.7e-69 266.2 337 50.4
Hma1.2p1_2162F.1_g315680 Hydrangea macrophylla HOM05D003639 ORTHO05D004246 9.7e-69 265.4 340 50.6
Duzib132G0222 Durio zibethinus HOM05D003639 ORTHO05D004246 2.8e-68 263.8 338 49.1
Prupe.7G050300 Prunus persica HOM05D003639 ORTHO05D004246 2.8e-68 263.8 297 54.9
MD12G1086300 Malus domestica HOM05D003639 ORTHO05D004246 3.7e-68 263.5 344 50.3
Nitab4.5_0001618g0260 Nicotiana tabacum HOM05D003639 ORTHO05D004246 3.7e-68 263.5 337 50.7
SGA_v2.0_scaffold296G47577 Striga asiatica HOM05D003639 ORTHO05D004246 4.8e-68 263.1 332 50.3
Lj5g0008946 Lotus japonicus HOM05D003639 ORTHO05D004246 6.3e-68 262.7 364 47.0
Os03g0355200 Oryza sativa ssp. japonica HOM05D003639 ORTHO05D004246 6.3e-68 262.7 464 63.6
Os03g0355400 Oryza sativa ssp. japonica HOM05D003639 ORTHO05D004246 6.3e-68 262.7 464 63.6
Rhsim03G0032000 Rhododendron simsii HOM05D003639 ORTHO05D004246 6.3e-68 262.7 308 51.6
TWI74G0834 Tripterygium wilfordii HOM05D003639 ORTHO05D004246 6.3e-68 262.7 337 47.2
CSS0048368 Camellia sinensis var. sinensis HOM05D003639 ORTHO05D004246 2.4e-67 260.8 337 48.7
Oeu023136.1 Olea europaea HOM05D003639 ORTHO05D004246 3.1e-67 260.4 338 48.5
Ca_25791_v3 Cicer arietinum L. HOM05D003639 ORTHO05D004246 4.1e-67 260.0 337 50.1
Lalb_Chr21g0305241 Lupinus albus HOM05D003639 ORTHO05D004246 4.1e-67 260.0 498 61.8
Psat6g009840 Pisum sativum HOM05D003639 ORTHO05D004246 4.1e-67 260.0 338 50.6
MSTRG.6401 Avicennia marina HOM05D003639 ORTHO05D004246 5.3e-67 259.6 339 49.9
Thecc.02G139000 Theobroma cacao HOM05D003639 ORTHO05D004246 9.1e-67 258.8 341 49.3
MBI13_g04793_MAGBIO Magnolia biondii HOM05D003639 ORTHO05D004246 1.2e-66 258.5 327 49.8
Phvul.007G249600 Phaseolus vulgaris HOM05D003639 ORTHO05D004246 1.2e-66 258.5 337 49.9
THA.LOC104824426 Tarenaya hassleriana HOM05D003639 ORTHO05D004246 1.2e-66 258.5 332 48.2
Nitab4.5_0000826g0140 Nicotiana tabacum HOM05D003639 ORTHO05D004246 2.0e-66 257.7 350 49.4
SalBow6G0945 Salvia bowleyana HOM05D003639 ORTHO05D004246 2.0e-66 257.7 265 57.0
CAN.G1237.4 Capsicum annuum HOM05D003639 ORTHO05D004246 2.6e-66 257.3 338 48.5
Hund19126 Selenicereus undatus HOM05D003639 ORTHO05D004246 4.5e-66 256.5 334 49.1
VMungo0720G2842 Vigna mungo HOM05D003639 ORTHO05D004246 4.5e-66 256.5 336 49.4
AUR62026120 Chenopodium quinoa HOM05D003639 ORTHO05D004246 5.9e-66 256.1 335 48.4
Solyc04g016510.3 Solanum lycopersicum HOM05D003639 ORTHO05D004246 7.7e-66 255.8 295 53.6
Actinidia39194 Actinidia chinensis HOM05D003639 ORTHO05D004246 1.0e-65 255.4 337 49.0
Duzib248G1450 Durio zibethinus HOM05D003639 ORTHO05D004246 1.0e-65 255.4 334 48.2
Sopen04g008580 Solanum pennellii HOM05D003639 ORTHO05D004246 1.0e-65 255.4 295 53.9
TPR.G1512 Trifolium pratense HOM05D003639 ORTHO05D004246 1.3e-65 255.0 338 48.8
PGSC0003DMG400012703 Solanum tuberosum HOM05D003639 ORTHO05D004246 1.7e-65 254.6 295 53.2
SGA_v2.0_scaffold69G23129 Striga asiatica HOM05D003639 ORTHO05D004246 1.7e-65 254.6 338 47.9
Cpa.g.sc120.6 Carica papaya HOM05D003639 ORTHO05D004246 2.2e-65 254.2 497 54.7
Peaxi162Scf00130g00929 Petunia axillaris HOM05D003639 ORTHO05D004246 3.8e-65 253.4 336 49.7
TPR.G10246 Trifolium pratense HOM05D003639 ORTHO05D004246 6.5e-65 252.7 335 49.6
Glyma.10G000800 Glycine max HOM05D003639 ORTHO05D004246 8.5e-65 252.3 337 49.9
Peaxi162Scf00177g10117 Petunia axillaris HOM05D003639 ORTHO05D004246 1.1e-64 251.9 265 56.2
AUR62024528 Chenopodium quinoa HOM05D003639 ORTHO05D004246 1.4e-64 251.5 333 47.1
C04p69090 Brassica napus HOM05D003639 ORTHO05D004246 1.9e-64 251.1 470 55.3
BolC4t28406H Brassica oleracea HOM05D003639 ORTHO05D004246 1.9e-64 251.1 470 55.3
Carub.0004s0611 Capsella rubella HOM05D003639 ORTHO05D004246 1.9e-64 251.1 311 48.2
Manes.09G015900 Manihot esculenta HOM05D003639 ORTHO05D004246 1.9e-64 251.1 283 54.4
Ah.13g076790 Amaranthus hybridus HOM05D003639 ORTHO05D004246 3.2e-64 250.4 337 48.4
Glyma.02G190600 Glycine max HOM05D003639 ORTHO05D004246 4.2e-64 250.0 339 49.6
Aa31LG1G23520 Aethionema arabicum HOM05D003639 ORTHO05D004246 5.5e-64 249.6 319 47.6
A04p31660 Brassica napus HOM05D003639 ORTHO05D004246 5.5e-64 249.6 470 55.1
BraA04t18624Z Brassica rapa HOM05D003639 ORTHO05D004246 5.5e-64 249.6 470 55.1
arahy.Tifrunner.gnm1.ann1.Y8CJQK Arachis hypogaea HOM05D003639 ORTHO05D004246 9.4e-64 248.8 339 48.1
Ciclev10006458m.g Citrus clementina HOM05D003639 ORTHO05D004246 9.4e-64 248.8 333 46.2
HPP92_010210 Vanilla planifolia HOM05D000527 ORTHO05D000559 9.4e-64 248.8 488 54.5
EL10Ac3g07157 Beta vulgaris HOM05D003639 ORTHO05D004246 1.2e-63 248.4 332 47.0
CSS0037940 Camellia sinensis var. sinensis HOM05D003639 ORTHO05D004246 2.7e-63 247.3 337 47.2
arahy.Tifrunner.gnm1.ann1.6W6BYV Arachis hypogaea HOM05D003639 ORTHO05D004246 3.6e-63 246.9 344 48.5
HPP92_010189 Vanilla planifolia HOM05D003639 ORTHO05D004246 3.6e-63 246.9 488 54.7
DCAR_014011 Daucus carota HOM05D003639 ORTHO05D004246 4.6e-63 246.5 340 47.4
Sed0002463 Sechium edule HOM05D003639 ORTHO05D004246 1.0e-62 245.4 447 64.0
C04p02760 Brassica napus HOM05D003639 ORTHO05D004246 3.0e-62 243.8 499 53.1
A05p02320 Brassica napus HOM05D003639 ORTHO05D004246 5.1e-62 243.0 485 53.8
PSO063G3048 Papaver somniferum HOM05D003639 ORTHO05D004246 8.8e-62 242.3 262 55.7
PSO832G3057 Papaver somniferum HOM05D003639 ORTHO05D004246 8.8e-62 242.3 292 52.7
AL4G39590 Arabidopsis lyrata HOM05D003639 ORTHO05D004246 1.1e-61 241.9 330 47.0
CARHR136620 Cardamine hirsuta HOM05D003639 ORTHO05D004246 1.1e-61 241.9 311 47.9
Lsat_1_v5_gn_4_41600 Lactuca sativa HOM05D003639 ORTHO05D004246 1.1e-61 241.9 266 53.4
SMO356G0612 Selaginella moellendorffii HOM05D003639 ORTHO05D004246 1.1e-61 241.9 475 56.8
Thhalv10000860m.g Eutrema salsugineum HOM05D003639 ORTHO05D004246 1.5e-61 241.5 331 45.9
Hma1.2p1_1333F.1_g276240 Hydrangea macrophylla HOM05D003639 ORTHO05D004246 1.5e-61 241.5 319 48.0
Gohir.D12G015400 Gossypium hirsutum HOM05D003639 ORTHO05D004246 2.0e-61 241.1 257 56.0
Sp4g23770 Schrenkiella parvula HOM05D003639 ORTHO05D004246 2.0e-61 241.1 330 46.7
Gohir.A12G015000 Gossypium hirsutum HOM05D003639 ORTHO05D004246 2.6e-61 240.7 257 56.0
Gorai.008G015500 Gossypium raimondii HOM05D003639 ORTHO05D004246 2.6e-61 240.7 257 56.0
BraA05t19227Z Brassica rapa HOM05D003639 ORTHO05D004246 4.4e-61 240.0 485 53.8
Thhalv10016457m.g Eutrema salsugineum HOM05D003639 ORTHO05D004246 5.7e-61 239.6 330 47.0
unitig_578.g16292 Utricularia gibba HOM05D003639 ORTHO05D004246 1.3e-60 238.4 371 44.5
AT2G41500 Arabidopsis thaliana HOM05D003639 ORTHO05D004246 1.7e-60 238.0 330 46.1
CiPaw.09G042100 Carya illinoinensis HOM05D003639 ORTHO05D004246 1.7e-60 238.0 340 47.1
Hma1.2p1_0338F.1_g129500 Hydrangea macrophylla HOM05D003639 ORTHO05D004246 2.2e-60 237.7 319 48.0
QL07p005224 Quercus lobata HOM05D003639 ORTHO05D004246 2.8e-60 237.3 289 50.9
BolC4t21916H Brassica oleracea HOM05D003639 ORTHO05D004246 3.7e-60 236.9 322 45.3
ECA234G2577 Erigeron canadensis HOM05D003639 ORTHO05D004246 1.1e-59 235.3 283 50.2
CANSAT80G2101 Cannabis sativa HOM05D003639 ORTHO05D004246 1.4e-59 235.0 250 55.6
Dinv30299 Davidia involucrata HOM05D003639 ORTHO05D004246 3.1e-59 233.8 262 54.6
unitig_44.g31550 Utricularia gibba HOM05D003639 ORTHO05D004246 9.1e-59 232.3 261 55.2
FAN09G0054 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.7e-57 228.0 265 53.2
CANSAT80G0359 Cannabis sativa HOM05D003639 ORTHO05D004246 5.0e-57 226.5 250 54.8
Potri.006G045800 Populus trichocarpa HOM05D003639 ORTHO05D004246 1.4e-56 224.9 340 43.2
BcaNung06794 Brassica carinata HOM05D003639 ORTHO05D004246 1.6e-55 221.5 323 45.2
FAN05G0107 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.6e-55 221.5 264 52.3
FAN14G4828 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.7e-55 220.7 314 47.5
Potri.016G042250 Populus trichocarpa HOM05D003639 ORTHO05D004246 2.7e-55 220.7 371 42.9
Eucgr.A02297 Eucalyptus grandis HOM05D003639 ORTHO05D004246 1.0e-54 218.8 338 44.4
FvH4_6g24750 Fragaria vesca HOM05D003639 ORTHO05D004246 1.8e-54 218.0 314 47.1
MCO12G002 Micromonas commoda HOM05D003639 ORTHO05D004246 6.7e-54 216.1 303 45.2
FAN02G3905 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.6e-53 214.2 295 49.8
BcaC02g12784 Brassica carinata HOM05D003639 ORTHO05D004246 5.7e-53 213.0 498 50.6
RcHm_v2.0_Chr3g0484331 Rosa chinensis HOM05D003639 ORTHO05D004246 2.0e-50 204.5 240 52.1
Zm00001eb017050 Zea mays HOM05D003639 ORTHO05D004246 2.2e-49 201.1 194 60.8
Lj4C34T1 Lonicera japonica HOM05D003639 ORTHO05D004246 1.5e-48 198.4 231 53.2
Atru.chr1.1191 Acer truncatum HOM05D003639 ORTHO05D004246 5.5e-48 196.4 222 55.4
TAR065G0005 Trochodendron aralioides HOM05D003639 ORTHO05D004246 3.3e-45 187.2 242 47.1
RcHm_v2.0_Chr3g0484501 Rosa chinensis HOM05D003639 ORTHO05D004246 4.1e-43 180.3 154 62.3
MD14G1080500 Malus domestica HOM05D003639 ORTHO05D004246 2.0e-42 177.9 207 52.7
GSVIVG01033551001 Vitis vinifera HOM05D003639 ORTHO05D004246 4.7e-39 166.8 227 45.8
VMungo0540G1675 Vigna mungo HOM05D003639 ORTHO05D004246 6.8e-38 162.9 215 47.4
Sabra06G0031300 Salix brachista HOM05D003639 ORTHO05D004246 8.8e-38 162.5 340 35.9
PRCOL_00003365 Prasinoderma coloniale HOM05D003639 ORTHO05D004246 7.5e-37 159.5 297 38.0
AL3G43260 Arabidopsis lyrata HOM05D003639 ORTHO05D004246 1.2e-34 152.1 133 57.1
Cc06_g18350 Coffea canephora HOM05D003639 ORTHO05D004246 5.0e-33 146.7 180 49.4
Cre16.g662800 Chlamydomonas reinhardtii HOM05D003639 ORTHO05D004246 7.2e-32 142.9 222 41.0
BcaB06g29187 Brassica carinata HOM05D003639 ORTHO05D004246 9.5e-32 142.5 195 44.1
Psat6g118240 Pisum sativum HOM05D003639 ORTHO05D004246 4.7e-31 140.2 268 39.6
Sed0000547 Sechium edule HOM05D003639 ORTHO05D004246 2.3e-30 137.9 161 51.6
FAN24G0290 Fragaria x ananassa HOM05D003639 ORTHO05D004246 8.8e-30 136.0 161 52.8
Cfa024100 Carpinus fangiana HOM05D003639 ORTHO05D004246 4.4e-29 133.7 278 33.5
FAN14G5922 Fragaria x ananassa HOM05D003639 ORTHO05D004246 7.5e-29 132.9 161 52.2
FAN17G3014 Fragaria x ananassa HOM05D003639 ORTHO05D004246 7.5e-29 132.9 161 52.2
FAN19G1783 Fragaria x ananassa HOM05D003639 ORTHO05D004246 9.8e-29 132.5 161 51.6
FAN03G0195 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.2e-28 131.3 161 51.6
FAN10G2664 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.2e-28 131.3 161 51.6
FAN23G2202 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.2e-28 131.3 161 51.6
MELO3C019779.2 Cucumis melo HOM05D003639 ORTHO05D004246 2.8e-28 131.0 247 39.7
FAN13G2401 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.8e-28 131.0 161 51.6
FAN09G4382 Fragaria x ananassa HOM05D003639 ORTHO05D004246 3.7e-28 130.6 158 51.9
FAN28G1931 Fragaria x ananassa HOM05D003639 ORTHO05D004246 4.9e-28 130.2 161 51.6
FAN01G0512 Fragaria x ananassa HOM05D003639 ORTHO05D004246 6.3e-28 129.8 161 51.6
FAN06G0994 Fragaria x ananassa HOM05D003639 ORTHO05D004246 8.3e-28 129.4 161 50.9
BcaNung04072 Brassica carinata HOM05D003639 ORTHO05D004246 1.1e-27 129.0 160 49.4
FAN22G1757 Fragaria x ananassa HOM05D003639 ORTHO05D004246 5.4e-27 126.7 161 50.3
BolC5t34692H Brassica oleracea HOM05D003639 ORTHO05D004246 7.0e-27 126.3 163 49.1
FAN27G3180 Fragaria x ananassa HOM05D003639 ORTHO05D004246 9.2e-27 125.9 161 50.3
FAN07G1748 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.7e-26 124.4 194 46.4
Medtr0012s0110 Medicago truncatula HOM05D003639 ORTHO05D004246 2.7e-26 124.4 132 60.6
vmacro21947 Vaccinium macrocarpon HOM05D003639 ORTHO05D004246 3.5e-26 124.0 331 33.8
FAN16G0989 Fragaria x ananassa HOM05D003639 ORTHO05D004246 3.3e-24 117.5 161 49.1
AT2G05720 Arabidopsis thaliana HOM05D003639 ORTHO05D004246 3.0e-22 110.9 191 37.2
Atru.chr6.1378 Acer truncatum HOM05D003639 ORTHO05D004246 2.4e-19 101.3 120 51.7
Atru.chr6.1380 Acer truncatum HOM05D003639 ORTHO05D004246 2.4e-19 101.3 261 57.9
FAN17G0086 Fragaria x ananassa HOM05D003639 ORTHO05D004246 3.2e-19 100.9 154 44.8
RcHm_v2.0_Chr3g0484401 Rosa chinensis HOM05D003639 ORTHO05D004246 7.8e-18 96.3 113 52.2
QL04p089213 Quercus lobata HOM05D003639 ORTHO05D004246 1.1e-16 92.4 58 67.2
FAN25G1774 Fragaria x ananassa HOM05D003639 ORTHO05D004246 4.3e-16 90.5 161 41.6
Atru.chr6.1379 Acer truncatum HOM05D003639 ORTHO05D004246 1.1e-14 85.9 74 62.2
Psat4g106880 Pisum sativum HOM05D003639 ORTHO05D004246 3.4e-13 80.9 122 44.3
COL.COLO4_13929 Corchorus olitorius HOM05D003639 ORTHO05D004246 5.8e-13 80.1 198 51.0
BcaC02g12785 Brassica carinata HOM05D003639 ORTHO05D004246 1.1e-08 65.9 87 47.1
BcaNung04071 Brassica carinata HOM05D003639 ORTHO05D004246 3.3e-08 64.3 103 42.7
Manes.13G116500 Manihot esculenta HOM05D002634 ORTHO05D003100 2.1e-07 61.6 137 29.2
AUR62017029 Chenopodium quinoa HOM05D000836 ORTHO05D000709 6.2e-07 60.1 139 28.1
Zm00001eb052290 Zea mays HOM05D003825 ORTHO05D004491 8.1e-07 59.7 132 31.8
Nn5g29575 Nelumbo nucifera HOM05D003825 ORTHO05D004491 1.1e-06 59.3 132 33.3
Mapoly0056s0121 Marchantia polymorpha HOM05D003825 ORTHO05D004491 1.8e-06 58.5 127 33.9
PSO675G6008 Papaver somniferum HOM05D003825 ORTHO05D004491 1.8e-06 58.5 132 33.3
Aqoxy6G01089 Aquilegia oxysepala HOM05D003825 ORTHO05D004491 2.3e-06 58.2 132 32.6
MELO3C019777.2 Cucumis melo HOM05D003639 ORTHO05D004246 2.3e-06 58.2 89 48.3
Os03g0669200 Oryza sativa ssp. japonica HOM05D003825 ORTHO05D004491 2.3e-06 58.2 129 30.2
Lalb_Chr13g0302231 Lupinus albus HOM05D000836 ORTHO05D000709 3.1e-06 57.8 121 29.8
Pp3c1_3700 Physcomitrium patens HOM05D000836 ORTHO05D000709 4.0e-06 57.4 123 31.7
Manes.08G135900 Manihot esculenta HOM05D000836 ORTHO05D000709 5.2e-06 57.0 56 48.2
EL10Ac8g20396 Beta vulgaris HOM05D000836 ORTHO05D000709 6.8e-06 56.6 120 30.0
Pp3c2_31650 Physcomitrium patens HOM05D000836 ORTHO05D000709 6.8e-06 56.6 123 30.9
TAR381G1531 Trochodendron aralioides HOM05D003825 ORTHO05D004491 6.8e-06 56.6 132 31.1
CANSAT56G1037 Cannabis sativa HOM05D000836 ORTHO05D000709 8.9e-06 56.2 125 29.6
Ca_21722_v3 Cicer arietinum L. HOM05D000836 ORTHO05D000709 8.9e-06 56.2 121 31.4
PGR102G2756 Punica granatum HOM05D000836 ORTHO05D000709 8.9e-06 56.2 122 30.3


User provided reference genes

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