Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_3720 Physcomitrium patens HOM05D001486 ORTHO05D004921 0.0e+00 2955.2 1518 100.0
Mapoly0035s0137 Marchantia polymorpha HOM05D001486 ORTHO05D004921 0.0e+00 1904.4 1536 66.3
ATR0753G157 Amborella trichopoda HOM05D001486 ORTHO05D004921 0.0e+00 1655.6 1532 57.9
QL03p035815 Quercus lobata HOM05D001486 ORTHO05D004921 0.0e+00 1622.8 1527 57.1
Gohir.D02G139700 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 1618.2 1522 57.2
Gorai.005G157100 Gossypium raimondii HOM05D001486 ORTHO05D004921 0.0e+00 1616.3 1522 57.2
Phvul.002G321200 Phaseolus vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 1615.5 1524 56.8
arahy.Tifrunner.gnm1.ann1.FK3VI9 Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 1614.4 1525 56.9
Atru.chr11.925 Acer truncatum HOM05D001486 ORTHO05D004921 0.0e+00 1614.0 1536 56.7
arahy.Tifrunner.gnm1.ann1.WZE3XK Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 1612.8 1526 56.9
Glyma.08G045900 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 1612.8 1524 56.5
Lj4g0010019 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 1612.4 1520 56.7
Potri.008G134800 Populus trichocarpa HOM05D001486 ORTHO05D004921 0.0e+00 1611.3 1532 56.9
Thecc.02G292500 Theobroma cacao HOM05D001486 ORTHO05D004921 0.0e+00 1611.3 1529 56.6
Duzib268G0355 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 1609.7 1531 56.9
Actinidia36627 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 1609.0 1529 57.1
Ca_17277_v3 Cicer arietinum L. HOM05D001486 ORTHO05D004921 0.0e+00 1608.6 1526 56.9
Manes.17G083900 Manihot esculenta HOM05D001486 ORTHO05D004921 0.0e+00 1608.2 1529 56.5
COL.COLO4_16588 Corchorus olitorius HOM05D001486 ORTHO05D004921 0.0e+00 1607.8 1530 56.6
TWI74G0959 Tripterygium wilfordii HOM05D001486 ORTHO05D004921 0.0e+00 1607.8 1528 57.1
VMungo0251G0466 Vigna mungo HOM05D001486 ORTHO05D004921 0.0e+00 1607.4 1524 56.4
CSS0037038 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 0.0e+00 1607.0 1531 57.3
Glyma.05G238800 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 1607.0 1523 56.3
Aqoxy3G03310 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 1605.9 1526 56.4
CANSAT01G0610 Cannabis sativa HOM05D001486 ORTHO05D004921 0.0e+00 1603.6 1526 56.9
Lj3A864G85 Lonicera japonica HOM05D001486 ORTHO05D004921 0.0e+00 1600.9 1534 56.4
TPR.G19252 Trifolium pratense HOM05D001486 ORTHO05D004921 0.0e+00 1600.9 1525 56.4
Psat7g007960 Pisum sativum HOM05D001486 ORTHO05D004921 0.0e+00 1598.9 1526 56.0
Nn4g24372 Nelumbo nucifera HOM05D001486 ORTHO05D004921 0.0e+00 1595.5 1479 58.2
SGA_v2.0_scaffold23G10214 Striga asiatica HOM05D001486 ORTHO05D004921 0.0e+00 1592.0 1523 56.8
Ciclev10014036m.g Citrus clementina HOM05D001486 ORTHO05D004921 0.0e+00 1591.6 1529 55.6
Migut.E00481 Erythranthe guttata HOM05D001486 ORTHO05D004921 0.0e+00 1590.9 1522 56.0
RcHm_v2.0_Chr4g0443061 Rosa chinensis HOM05D001486 ORTHO05D004921 0.0e+00 1590.1 1531 56.4
MSTRG.2128 Avicennia marina HOM05D001486 ORTHO05D004921 0.0e+00 1589.7 1523 56.1
Eucgr.G02106 Eucalyptus grandis HOM05D001486 ORTHO05D004921 0.0e+00 1589.7 1531 55.9
Aqoxy7G03241 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 1585.9 1528 56.3
Medtr8g105290 Medicago truncatula HOM05D001486 ORTHO05D004921 0.0e+00 1585.9 1525 55.9
PGR142G2431 Punica granatum HOM05D001486 ORTHO05D004921 0.0e+00 1585.1 1532 55.5
SalBow2G2685 Salvia bowleyana HOM05D001486 ORTHO05D004921 0.0e+00 1582.8 1558 55.2
FvH4_4g33560 Fragaria vesca HOM05D001486 ORTHO05D004921 0.0e+00 1581.6 1536 55.7
CAN.G149.16 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 1581.2 1526 55.8
Prupe.1G333300 Prunus persica HOM05D001486 ORTHO05D004921 0.0e+00 1580.8 1526 56.3
FAN22G2372 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 1579.3 1536 55.7
Lalb_Chr05g0222211 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 1579.3 1523 55.3
Actinidia12394 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 1578.1 1524 56.4
FAN07G1595 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 1576.2 1534 55.6
EL10Ac3g06288 Beta vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 1575.5 1525 55.9
Sabra08G0102800 Salix brachista HOM05D001486 ORTHO05D004921 0.0e+00 1575.5 1568 55.5
FAN12G0503 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 1573.9 1536 55.5
Duzib251G0538 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 1572.8 1529 55.5
FAN17G1739 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 1572.4 1536 55.3
Lalb_Chr09g0330891 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 1569.3 1522 55.2
Sopen07g004030 Solanum pennellii HOM05D001486 ORTHO05D004921 0.0e+00 1566.6 1527 55.6
HanXRQChr08g0212501 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 1565.8 1524 56.0
MD13G1020400 Malus domestica HOM05D001486 ORTHO05D004921 0.0e+00 1564.7 1526 55.8
Ah.13g072990 Amaranthus hybridus HOM05D001486 ORTHO05D004921 0.0e+00 1561.6 1523 55.3
vmacro10693 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 0.0e+00 1561.2 1580 53.7
Solyc07g008160.3 Solanum lycopersicum HOM05D001486 ORTHO05D004921 0.0e+00 1559.7 1524 55.3
AagrBONN_evm.TU.Sc2ySwM_362.1455 Anthoceros agrestis HOM05D001486 ORTHO05D004921 0.0e+00 1553.5 1320 62.4
Rhsim09G0089500 Rhododendron simsii HOM05D001486 ORTHO05D004921 0.0e+00 1545.8 1599 53.2
THA.LOC104823681 Tarenaya hassleriana HOM05D001486 ORTHO05D004921 0.0e+00 1545.8 1528 55.2
ECA233G0786 Erigeron canadensis HOM05D001486 ORTHO05D004921 0.0e+00 1537.3 1512 55.7
AL1G26870 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 0.0e+00 1536.5 1526 55.1
Cc04_g10510 Coffea canephora HOM05D001486 ORTHO05D004921 0.0e+00 1536.2 1523 54.4
PSO782G0822 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 1535.4 1526 55.0
PSO063G3102 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 1530.0 1526 54.7
CARHR015390 Cardamine hirsuta HOM05D001486 ORTHO05D004921 0.0e+00 1529.6 1526 54.7
DCAR_007329 Daucus carota HOM05D001486 ORTHO05D004921 0.0e+00 1528.8 1520 53.9
AT1G14850 Arabidopsis thaliana HOM05D001486 ORTHO05D004921 0.0e+00 1528.5 1525 54.7
Thhalv10006562m.g Eutrema salsugineum HOM05D001486 ORTHO05D004921 0.0e+00 1527.3 1523 55.0
Lsat_1_v5_gn_8_46521 Lactuca sativa HOM05D001486 ORTHO05D004921 0.0e+00 1527.3 1515 54.9
Sed0010499 Sechium edule HOM05D001486 ORTHO05D004921 0.0e+00 1522.3 1530 54.2
BcaB08g34420 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 1520.4 1521 55.0
Sc11g0004180 Simmondsia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 1518.8 1530 55.2
BcaC07g41534 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 1518.4 1524 54.9
Sp1g13290 Schrenkiella parvula HOM05D001486 ORTHO05D004921 0.0e+00 1516.9 1523 54.9
Hund13366 Selenicereus undatus HOM05D001486 ORTHO05D004921 0.0e+00 1514.2 1583 52.7
BolC8t52091H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 1512.3 1532 54.7
Carub.0001s1464 Capsella rubella HOM05D001486 ORTHO05D004921 0.0e+00 1511.9 1523 53.8
A09p61750 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1511.1 1535 54.8
C08p45360 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1510.7 1534 54.6
Oeu064208.1 Olea europaea HOM05D001486 ORTHO05D004921 0.0e+00 1507.7 1525 53.6
BcaB02g06554 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 1506.5 1523 54.7
BraA09t41545Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 1506.1 1541 54.5
BcaC05g25406 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 1503.8 1525 54.4
C05p12830 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1500.7 1534 54.2
AUR62002589 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 1500.7 1530 53.7
ClCG07G005610 Citrullus lanatus HOM05D001486 ORTHO05D004921 0.0e+00 1498.0 1530 53.6
MELO3C026441.2 Cucumis melo HOM05D001486 ORTHO05D004921 0.0e+00 1496.9 1534 53.1
BolC5t30028H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 1495.7 1535 54.0
CsaV3_5G015740 Cucumis sativus L. HOM05D001486 ORTHO05D004921 0.0e+00 1490.7 1534 52.7
BraA06t24267Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 1489.6 1534 54.4
HPP92_002282 Vanilla planifolia HOM05D001486 ORTHO05D004921 0.0e+00 1485.7 1517 52.2
Os06g0305200 Oryza sativa ssp. japonica HOM05D001486 ORTHO05D004921 0.0e+00 1478.4 1522 52.6
Cpa.g.sc2.194 Carica papaya HOM05D001486 ORTHO05D004921 0.0e+00 1471.8 1533 53.7
Aa31LG1G260 Aethionema arabicum HOM05D001486 ORTHO05D004921 0.0e+00 1469.5 1506 54.2
AUR62030013 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 1447.2 1624 50.6
Zm00001eb009110 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1405.6 1492 51.0
Dinv10475 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 1339.3 1344 55.6
Gohir.A03G115400 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 1339.3 1340 55.4
Dinv07730 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 1329.3 1318 55.2
HanXRQChr12g0363231 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 1323.9 1474 50.6
A06p10890 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1314.3 1403 53.6
CiPaw.06G051900 Carya illinoinensis HOM05D001486 ORTHO05D004921 0.0e+00 1310.0 1339 55.3
CAN.G601.2 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 1307.4 1334 54.7
Haze_10881 Corylus avellana HOM05D001486 ORTHO05D004921 0.0e+00 1281.9 1628 47.2
Hma1.2p1_0705F.1_g206910 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1279.2 1251 56.0
Hma1.2p1_0277F.1_g111740 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1269.2 1428 51.1
Peaxi162Scf00376g00816 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1259.6 1472 49.0
TAR629G0611 Trochodendron aralioides HOM05D001486 ORTHO05D004921 0.0e+00 1124.0 1017 58.8
Zm00001eb399840 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1119.8 1242 49.0
Peaxi162Scf01391g00116 Petunia axillaris HOM05D001486 ORTHO05D004921 2.2e-304 1049.7 1458 44.5
SEGI_07920 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 6.5e-296 1021.5 866 62.7
Lj1g0014898 Lotus japonicus HOM05D001486 ORTHO05D004921 1.0e-288 997.7 1103 51.3
Nitab4.5_0004576g0040 Nicotiana tabacum HOM05D001486 ORTHO05D004921 1.4e-274 950.7 1400 42.1
Nitab4.5_0010421g0010 Nicotiana tabacum HOM05D001486 ORTHO05D004921 6.3e-259 898.7 1400 40.6
GSVIVG01011662001 Vitis vinifera HOM05D001486 ORTHO05D004921 5.8e-228 795.8 738 57.6
MD16G1018500 Malus domestica HOM05D001486 ORTHO05D004921 7.6e-212 742.3 748 52.7
Peaxi162Scf01152g00010 Petunia axillaris HOM05D001486 ORTHO05D004921 1.1e-205 721.8 1172 42.1
unitig_27.g25159 Utricularia gibba HOM05D001486 ORTHO05D004921 2.0e-196 691.0 714 52.2
CDE06G1861 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 9.3e-178 629.0 598 54.8
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 2.5e-170 604.4 800 46.2
CDE06G1153 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 7.2e-162 576.2 609 51.2
Peaxi162Scf01152g00113 Petunia axillaris HOM05D001486 ORTHO05D004921 7.4e-151 539.7 952 39.4
unitig_27.g25160 Utricularia gibba HOM05D001486 ORTHO05D004921 2.0e-148 531.6 619 48.1
GSVIVG01011661001 Vitis vinifera HOM05D001486 ORTHO05D004921 1.2e-137 495.7 367 65.4
Carub.0127s0003 Capsella rubella HOM05D001486 ORTHO05D004921 3.5e-132 477.6 915 36.2
TAR629G0795 Trochodendron aralioides HOM05D001486 ORTHO05D004921 3.4e-119 434.5 442 55.9
ECA247G0951 Erigeron canadensis HOM05D001486 ORTHO05D004921 1.1e-117 429.5 790 37.3
PRCOL_00002396 Prasinoderma coloniale HOM05D001486 ORTHO05D004921 1.7e-110 405.6 1626 28.7
AL1G32070 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 4.9e-110 404.1 484 48.8
MD16G1018600 Malus domestica HOM05D001486 ORTHO05D004921 4.6e-108 397.5 499 49.9
MCO15G435 Micromonas commoda HOM05D001486 ORTHO05D004921 7.3e-106 390.2 1793 27.7
RcHm_v2.0_Chr2g0167011 Rosa chinensis HOM05D001486 ORTHO05D004921 1.3e-99 369.4 593 41.3
CDE07G1854 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 2.6e-95 355.1 799 32.9
SEGI_12334 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 2.3e-91 342.0 346 57.2
Cre09.g394350 Chlamydomonas reinhardtii HOM05D001486 ORTHO05D004921 1.7e-86 325.9 1599 25.6
SEGI_06977 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 2.9e-70 271.9 217 63.6
Pp3c3_36410 Physcomitrium patens HOM05D001486 ORTHO05D004921 3.2e-69 268.5 215 67.9
MD16G1018800 Malus domestica HOM05D001486 ORTHO05D004921 3.7e-65 255.0 209 60.3
CDE07G0203 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 4.6e-60 238.0 451 36.8
CAN.G601.1 Capsicum annuum HOM05D001486 ORTHO05D004921 1.4e-56 226.5 153 65.4
FvH4_1g18130 Fragaria vesca HOM05D001486 ORTHO05D004921 1.8e-56 226.1 156 62.8
AL1G32080 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 1.5e-55 223.0 224 51.8
Zm00001eb255180 Zea mays HOM05D001486 ORTHO05D004921 5.1e-51 208.0 195 52.3
vmacro04889 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 1.8e-48 199.5 243 44.9
Cfa024881 Carpinus fangiana HOM05D005623 ORTHO05D007130 1.1e-45 190.3 1361 23.4
vmacro09906 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 7.2e-45 187.6 289 38.8
SGA_v2.0_scaffold23G10209 Striga asiatica HOM05D001486 ORTHO05D004921 1.0e-43 183.7 102 81.4
CARHR227050 Cardamine hirsuta HOM05D001486 ORTHO05D004921 1.2e-28 133.7 130 52.3
CSS0012816 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 8.0e-28 131.0 193 40.4
AL2G18360 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 1.7e-25 123.2 351 29.9
RcHm_v2.0_Chr2g0167021 Rosa chinensis HOM05D001486 ORTHO05D004921 3.7e-25 122.1 212 37.3
Zm00001eb235300 Zea mays HOM05D001486 ORTHO05D004921 8.3e-25 120.9 88 60.2
SEGI_12550 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 2.9e-22 112.5 58 79.3
ClCG01G015310 Citrullus lanatus HOM05D001486 ORTHO05D004921 4.2e-21 108.6 56 80.4
BcaC09g49263 Brassica carinata HOM05D001486 ORTHO05D012131 4.0e-19 102.1 96 54.2
Zm00001eb201400 Zea mays HOM05D001486 ORTHO05D004921 5.2e-19 101.7 101 48.5
BcaC01g04114 Brassica carinata HOM05D001486 ORTHO05D012131 3.7e-17 95.5 89 53.9
Rhsim12G0118300 Rhododendron simsii HOM05D001486 ORTHO05D004921 8.3e-17 94.4 101 49.5
SMO306G0002 Selaginella moellendorffii HOM05D065592 ORTHO05D004921 1.1e-13 84.0 464 24.6
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 2.1e-12 79.7 66 53.0
GSVIVG01026805001 Vitis vinifera HOM05D001486 ORTHO05D004921 4.0e-11 75.5 70 51.4
Pp3c5_16790 Physcomitrium patens HOM05D001486 ORTHO05D004921 2.0e-10 73.2 129 38.0
AL3G34910 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 1.3e-09 70.5 132 38.6
FvH4_4g10520 Fragaria vesca HOM05D002057 ORTHO05D004921 3.1e-08 65.9 34 79.4
SMO270G0006 Selaginella moellendorffii HOM05D065592 ORTHO05D004921 9.2e-08 64.3 150 30.0
GSVIVG01001572001 Vitis vinifera HOM05D001486 ORTHO05D004921 2.0e-07 63.2 77 53.2


User provided reference genes

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