Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_23290 Physcomitrium patens HOM05D000809 ORTHO05D007733 7.5e-192 673.7 344 100.0
Pp3c19_20070 Physcomitrium patens HOM05D000809 ORTHO05D007733 1.8e-105 386.7 458 51.1
Gohir.D05G022766 Gossypium hirsutum HOM05D000809 ORTHO05D007733 2.3e-84 316.6 409 46.0
Ciclev10007988m.g Citrus clementina HOM05D000809 ORTHO05D007733 3.7e-82 309.3 426 44.1
Gohir.A05G021400 Gossypium hirsutum HOM05D000809 ORTHO05D007733 2.4e-81 306.6 426 43.7
Gohir.D05G022900 Gossypium hirsutum HOM05D000809 ORTHO05D007733 2.4e-81 306.6 426 43.7
Gorai.009G023100 Gossypium raimondii HOM05D000809 ORTHO05D007733 2.4e-81 306.6 426 43.7
Cfa003287 Carpinus fangiana HOM05D000809 ORTHO05D007733 4.1e-81 305.8 423 43.5
QL02p085975 Quercus lobata HOM05D000809 ORTHO05D007733 7.0e-81 305.1 423 43.7
CsaV3_1G030840 Cucumis sativus L. HOM05D000809 ORTHO05D007733 2.0e-80 303.5 422 43.6
COL.COLO4_34883 Corchorus olitorius HOM05D000809 ORTHO05D007733 2.7e-80 303.1 426 43.7
CiPaw.03G234800 Carya illinoinensis HOM05D000809 ORTHO05D007733 3.5e-80 302.8 423 43.3
MELO3C025316.2 Cucumis melo HOM05D000809 ORTHO05D007733 3.5e-80 302.8 422 43.6
SEGI_18085 Sequoiadendron giganteum HOM05D000809 ORTHO05D007733 3.5e-80 302.8 423 43.7
CDE06G2677 Ceratophyllum demersum HOM05D000809 ORTHO05D007733 7.7e-80 301.6 423 43.5
Aqoxy7G01822 Aquilegia oxysepala HOM05D000809 ORTHO05D007733 1.0e-79 301.2 426 42.5
Mapoly0100s0060 Marchantia polymorpha HOM05D000809 ORTHO05D007733 1.0e-79 301.2 455 40.9
PGR102G2432 Punica granatum HOM05D000809 ORTHO05D007733 2.2e-79 300.1 422 43.8
THA.LOC104808749 Tarenaya hassleriana HOM05D000809 ORTHO05D007733 2.9e-79 299.7 428 43.5
Thecc.09G114200 Theobroma cacao HOM05D000809 ORTHO05D007733 2.9e-79 299.7 426 43.2
Atru.chr7.1304 Acer truncatum HOM05D000809 ORTHO05D007733 5.0e-79 298.9 422 42.9
CANSAT56G3015 Cannabis sativa HOM05D000809 ORTHO05D007733 6.5e-79 298.5 425 43.1
Cc06_g09380 Coffea canephora HOM05D000809 ORTHO05D007733 6.5e-79 298.5 422 42.4
PSO063G5751 Papaver somniferum HOM05D000809 ORTHO05D007733 6.5e-79 298.5 426 42.7
Sed0012141 Sechium edule HOM05D000809 ORTHO05D007733 6.5e-79 298.5 422 43.4
AUR62011020 Chenopodium quinoa HOM05D000809 ORTHO05D007733 8.5e-79 298.1 423 43.0
Manes.16G070800 Manihot esculenta HOM05D000809 ORTHO05D007733 8.5e-79 298.1 422 43.6
TAR624G0463 Trochodendron aralioides HOM05D000809 ORTHO05D007733 8.5e-79 298.1 424 42.7
Potri.018G076600 Populus trichocarpa HOM05D000809 ORTHO05D007733 1.1e-78 297.7 426 42.7
Nn2g11810 Nelumbo nucifera HOM05D000809 ORTHO05D007733 1.5e-78 297.4 423 43.0
GSVIVG01015424001 Vitis vinifera HOM05D000809 ORTHO05D007733 1.9e-78 297.0 422 42.9
BcaC06g32603 Brassica carinata HOM05D000809 ORTHO05D007733 2.5e-78 296.6 428 43.2
C07p56430 Brassica napus HOM05D000809 ORTHO05D007733 2.5e-78 296.6 428 43.2
BolC7t46122H Brassica oleracea HOM05D000809 ORTHO05D007733 2.5e-78 296.6 428 43.2
CSS0004763 Camellia sinensis var. sinensis HOM05D000809 ORTHO05D007733 2.5e-78 296.6 423 42.8
CSS0005642 Camellia sinensis var. sinensis HOM05D000809 ORTHO05D007733 2.5e-78 296.6 423 42.8
PSO782G1122 Papaver somniferum HOM05D000809 ORTHO05D007733 2.5e-78 296.6 423 42.8
A03p58410 Brassica napus HOM05D000809 ORTHO05D007733 3.2e-78 296.2 428 43.2
BraA03t14902Z Brassica rapa HOM05D000809 ORTHO05D007733 3.2e-78 296.2 428 43.2
Duzib168G1885 Durio zibethinus HOM05D000809 ORTHO05D007733 4.2e-78 295.8 426 42.5
Aa31LG8G11120 Aethionema arabicum HOM05D000809 ORTHO05D007733 5.5e-78 295.4 428 43.0
AL3G39860 Arabidopsis lyrata HOM05D000809 ORTHO05D007733 5.5e-78 295.4 428 43.2
AT3G24430 Arabidopsis thaliana HOM05D000809 ORTHO05D007733 5.5e-78 295.4 428 43.2
FAN26G0422 Fragaria x ananassa HOM05D000809 ORTHO05D007733 5.5e-78 295.4 419 43.4
Lsat_1_v5_gn_8_93401 Lactuca sativa HOM05D000809 ORTHO05D007733 5.5e-78 295.4 425 43.1
Sp3g24440 Schrenkiella parvula HOM05D000809 ORTHO05D007733 7.2e-78 295.0 428 43.0
ATR0037G048 Amborella trichopoda HOM05D000809 ORTHO05D007733 1.2e-77 294.3 421 43.0
Carub.0003s2473 Capsella rubella HOM05D000809 ORTHO05D007733 1.2e-77 294.3 428 42.5
Prupe.7G227600 Prunus persica HOM05D000809 ORTHO05D007733 1.2e-77 294.3 424 42.2
CARHR100520 Cardamine hirsuta HOM05D000809 ORTHO05D007733 1.6e-77 293.9 428 43.0
FAN26G2813 Fragaria x ananassa HOM05D000809 ORTHO05D007733 1.6e-77 293.9 419 43.2
HanXRQChr05g0137991 Helianthus annuus HOM05D000809 ORTHO05D007733 2.1e-77 293.5 424 42.2
FvH4_1g05310 Fragaria vesca HOM05D000809 ORTHO05D007733 2.7e-77 293.1 419 43.2
MSTRG.10680 Avicennia marina HOM05D000809 ORTHO05D007733 4.7e-77 292.4 422 41.9
Thhalv10002483m.g Eutrema salsugineum HOM05D000809 ORTHO05D007733 4.7e-77 292.4 428 42.8
Ca_25514_v3 Cicer arietinum L. HOM05D000809 ORTHO05D007733 6.1e-77 292.0 420 42.6
TAR626G0858 Trochodendron aralioides HOM05D000809 ORTHO05D007733 6.1e-77 292.0 423 42.3
Haze_25686 Corylus avellana HOM05D000809 ORTHO05D007733 8.0e-77 291.6 452 40.7
unitig_899.g15426 Utricularia gibba HOM05D000809 ORTHO05D007733 8.0e-77 291.6 436 41.7
Migut.K00460 Erythranthe guttata HOM05D000809 ORTHO05D007733 1.0e-76 291.2 422 42.7
TWI34G1334 Tripterygium wilfordii HOM05D000809 ORTHO05D007733 1.0e-76 291.2 422 42.4
CAN.G1710.9 Capsicum annuum HOM05D000809 ORTHO05D007733 1.4e-76 290.8 422 41.7
RcHm_v2.0_Chr2g0091011 Rosa chinensis HOM05D000809 ORTHO05D007733 1.8e-76 290.4 419 42.7
ECA238G4585 Erigeron canadensis HOM05D000809 ORTHO05D007733 2.3e-76 290.0 424 42.0
PGSC0003DMG400000383 Solanum tuberosum HOM05D000809 ORTHO05D007733 2.3e-76 290.0 422 41.7
Nn8g39257 Nelumbo nucifera HOM05D000809 ORTHO05D007733 3.0e-76 289.7 423 42.1
Nitab4.5_0001672g0130 Nicotiana tabacum HOM05D000809 ORTHO05D007733 3.0e-76 289.7 422 41.5
Cpa.g.sc23.132 Carica papaya HOM05D000809 ORTHO05D007733 4.0e-76 289.3 426 42.3
Nitab4.5_0003537g0040 Nicotiana tabacum HOM05D000809 ORTHO05D007733 4.0e-76 289.3 422 41.5
Glyma.09G187800 Glycine max HOM05D000809 ORTHO05D007733 5.2e-76 288.9 423 41.8
SalBow1G2443 Salvia bowleyana HOM05D000809 ORTHO05D007733 5.2e-76 288.9 435 42.1
Solyc12g007010.2 Solanum lycopersicum HOM05D000809 ORTHO05D007733 5.2e-76 288.9 422 41.5
TWI63G1087 Tripterygium wilfordii HOM05D000809 ORTHO05D007733 5.2e-76 288.9 422 42.4
VMungo0464G1974 Vigna mungo HOM05D000809 ORTHO05D007733 5.2e-76 288.9 419 42.2
Phvul.004G160900 Phaseolus vulgaris HOM05D000809 ORTHO05D007733 6.8e-76 288.5 424 42.5
HPP92_006444 Vanilla planifolia HOM05D000809 ORTHO05D007733 6.8e-76 288.5 423 42.1
Glyma.07G089200 Glycine max HOM05D000809 ORTHO05D007733 8.8e-76 288.1 423 42.1
Lalb_Chr24g0397641 Lupinus albus HOM05D000809 ORTHO05D007733 1.2e-75 287.7 423 40.9
Peaxi162Scf00546g00322 Petunia axillaris HOM05D000809 ORTHO05D007733 1.2e-75 287.7 422 41.2
Lj2g0016022 Lotus japonicus HOM05D000809 ORTHO05D007733 1.5e-75 287.3 422 41.5
SGA_v2.0_scaffold109G31030 Striga asiatica HOM05D000809 ORTHO05D007733 2.0e-75 287.0 422 41.7
Medtr6g086600 Medicago truncatula HOM05D000809 ORTHO05D007733 4.4e-75 285.8 420 41.4
TPR.G31450 Trifolium pratense HOM05D000809 ORTHO05D007733 4.4e-75 285.8 420 41.0
SMO118G0383 Selaginella moellendorffii HOM05D000809 ORTHO05D007733 9.8e-75 284.6 441 40.4
Sopen12g002980 Solanum pennellii HOM05D000809 ORTHO05D007733 1.7e-74 283.9 422 41.0
Eucgr.C03953 Eucalyptus grandis HOM05D000809 ORTHO05D007733 2.8e-74 283.1 422 41.9
AUR62033393 Chenopodium quinoa HOM05D000809 ORTHO05D007733 4.9e-74 282.3 407 42.5
FAN19G0453 Fragaria x ananassa HOM05D000809 ORTHO05D007733 1.1e-73 281.2 450 40.2
DCAR_012086 Daucus carota HOM05D000809 ORTHO05D007733 3.1e-73 279.6 308 51.6
CDE04G2267 Ceratophyllum demersum HOM05D000809 ORTHO05D007733 7.7e-72 275.0 237 61.6
Sc08g0007210 Simmondsia chinensis HOM05D000809 ORTHO05D007733 2.9e-71 273.1 405 41.7
arahy.Tifrunner.gnm1.ann1.G2DL39 Arachis hypogaea HOM05D000809 ORTHO05D007733 5.0e-71 272.3 420 40.0
arahy.Tifrunner.gnm1.ann1.JACH1V Arachis hypogaea HOM05D000809 ORTHO05D007733 5.0e-71 272.3 426 39.7
Zm00001eb089070 Zea mays HOM05D000809 ORTHO05D007733 6.1e-69 265.4 239 58.6
Rhsim01G0091800 Rhododendron simsii HOM05D000809 ORTHO05D007733 2.6e-67 260.0 422 40.5
Psat1g039560 Pisum sativum HOM05D000809 ORTHO05D007733 1.1e-65 254.6 234 58.1
MD15G1189200 Malus domestica HOM05D000809 ORTHO05D007733 1.8e-65 253.8 424 39.2
CBR_g30185 Chara braunii HOM05D000809 ORTHO05D007733 2.7e-64 250.0 419 37.2
ClCG06G010380 Citrullus lanatus HOM05D000809 ORTHO05D007733 1.3e-63 247.7 436 38.3
Eucgr.C04130 Eucalyptus grandis HOM05D000809 ORTHO05D007733 3.9e-63 246.1 348 43.4
Actinidia07419 Actinidia chinensis HOM05D000809 ORTHO05D007733 5.0e-63 245.7 410 39.3
Oeu000378.3 Olea europaea HOM05D000809 ORTHO05D007733 5.0e-63 245.7 235 57.9
Lj7C645G9 Lonicera japonica HOM05D000809 ORTHO05D007733 9.5e-62 241.5 424 37.7
EL10Ac8g18530 Beta vulgaris HOM05D000809 ORTHO05D007733 2.3e-60 236.9 350 42.6
Sabra18G0064600 Salix brachista HOM05D000809 ORTHO05D007733 2.2e-58 230.3 458 35.8
MD02G1056300 Malus domestica HOM05D000809 ORTHO05D007733 1.5e-51 207.6 307 42.3
Actinidia32693 Actinidia chinensis HOM05D000809 ORTHO05D007733 7.3e-46 188.7 181 55.8
vmacro20667 Vaccinium macrocarpon HOM05D000809 ORTHO05D007733 1.2e-45 188.0 161 59.6
Eucgr.C03960 Eucalyptus grandis HOM05D000809 ORTHO05D007733 3.1e-44 183.3 205 50.2
Hund09189 Selenicereus undatus HOM05D000809 ORTHO05D007733 4.1e-41 172.9 248 44.4
Ah.10g029140 Amaranthus hybridus HOM05D000809 ORTHO05D007733 1.6e-40 171.0 140 58.6
Oeu013437.1 Olea europaea HOM05D000396 ORTHO05D007733 7.8e-40 168.7 350 35.1
SpUn0651_0010 Schrenkiella parvula HOM05D000809 ORTHO05D007733 7.8e-40 168.7 145 59.3
Dinv36606 Davidia involucrata HOM05D000809 ORTHO05D007733 1.9e-38 164.1 320 35.9
PRCOL_00006186 Prasinoderma coloniale HOM05D000809 ORTHO05D007733 9.6e-38 161.8 442 28.1
Cre01.g045902 Chlamydomonas reinhardtii HOM05D000809 ORTHO05D007733 3.1e-36 156.8 430 28.8
AagrBONN_evm.TU.Sc2ySwM_228.454 Anthoceros agrestis HOM05D000809 ORTHO05D007733 1.7e-34 151.0 276 38.0
Eucgr.C04131 Eucalyptus grandis HOM05D000809 ORTHO05D007733 1.0e-31 141.7 289 35.3
MCO05G106 Micromonas commoda HOM05D000809 ORTHO05D007733 3.3e-30 136.7 426 28.4
vmacro20666 Vaccinium macrocarpon HOM05D000809 ORTHO05D007733 8.1e-29 132.1 250 36.4
Os01g0719700 Oryza sativa ssp. japonica HOM05D000809 ORTHO05D007733 3.4e-27 126.7 100 61.0
RcHm_v2.0_Chr3g0496131 Rosa chinensis HOM05D000809 ORTHO05D007733 1.7e-26 124.4 123 50.4
Eucgr.C03955 Eucalyptus grandis HOM05D000809 ORTHO05D007733 6.0e-16 89.4 132 40.9
Gohir.A12G059950 Gossypium hirsutum HOM05D000809 ORTHO05D016264 1.1e-14 85.1 57 64.9
Gohir.D10G166101 Gossypium hirsutum HOM05D000809 ORTHO05D016264 1.1e-14 85.1 57 64.9
Gorai.001G260200 Gossypium raimondii HOM05D000809 ORTHO05D016264 1.1e-14 85.1 57 64.9
AUR62029038 Chenopodium quinoa HOM05D000809 ORTHO05D001691 1.4e-12 78.2 64 56.2
AagrBONN_evm.TU.Sc2ySwM_344.1144 Anthoceros agrestis HOM05D009372 ORTHO05D013436 2.0e-11 74.3 62 53.2
AagrBONN_evm.TU.Sc2ySwM_187.2 Anthoceros agrestis HOM05D009372 ORTHO05D013436 1.1e-09 68.6 44 59.1
AagrBONN_evm.TU.Sc2ySwM_340.881 Anthoceros agrestis HOM05D000809 ORTHO05D023486 1.4e-09 68.2 42 61.9
AagrBONN_evm.TU.Sc2ySwM_344.2654 Anthoceros agrestis HOM05D000809 ORTHO05D023486 6.0e-08 62.8 37 67.6
Gohir.D05G069650 Gossypium hirsutum HOM05D000809 ORTHO05D016264 7.9e-08 62.4 38 71.1
AagrBONN_evm.TU.Sc2ySwM_228.4030 Anthoceros agrestis HOM05D000809 ORTHO05D007735 8.7e-07 58.9 197 27.4
Cpa.g.sc114.64 Carica papaya HOM05D000809 ORTHO05D007735 1.5e-06 58.2 118 31.4
PRCOL_00002169 Prasinoderma coloniale HOM05D000809 ORTHO05D007735 1.9e-06 57.8 89 38.2
Thecc.01G264600 Theobroma cacao HOM05D000809 ORTHO05D007735 1.9e-06 57.8 202 24.8
Ciclev10021421m.g Citrus clementina HOM05D000809 ORTHO05D007735 4.3e-06 56.6 208 24.5
CSS0007694 Camellia sinensis var. sinensis HOM05D000809 ORTHO05D007735 9.6e-06 55.5 121 30.6
Gohir.A08G060900 Gossypium hirsutum HOM05D000809 ORTHO05D007735 9.6e-06 55.5 211 23.2


User provided reference genes

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