Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_15880 Physcomitrium patens HOM05D001849 ORTHO05D004689 0.0e+00 2290.4 1138 100.0
Mapoly0024s0112 Marchantia polymorpha HOM05D001849 ORTHO05D004689 7.8e-312 1073.9 1129 52.6
AagrBONN_evm.TU.Sc2ySwM_362.2383 Anthoceros agrestis HOM05D001849 ORTHO05D004689 3.9e-306 1055.0 1141 50.7
MBI13_g01700_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 1.4e-266 923.7 967 50.4
Manes.11G016400 Manihot esculenta HOM05D001849 ORTHO05D004689 1.3e-261 907.1 969 49.4
ATR0681G401 Amborella trichopoda HOM05D001849 ORTHO05D004689 3.1e-258 896.0 971 48.6
Duzib192G0006 Durio zibethinus HOM05D001849 ORTHO05D004689 1.7e-256 890.2 966 48.7
Potri.001G165900 Populus trichocarpa HOM05D001849 ORTHO05D004689 9.2e-255 884.4 969 48.2
Solyc12g049410.3 Solanum lycopersicum HOM05D001849 ORTHO05D004689 1.0e-253 880.9 965 48.3
Gohir.A09G079900 Gossypium hirsutum HOM05D001849 ORTHO05D004689 1.7e-253 880.2 966 47.9
Prupe.3G037400 Prunus persica HOM05D001849 ORTHO05D004689 2.3e-253 879.8 971 48.0
Lj3g0004011 Lotus japonicus HOM05D001849 ORTHO05D004689 5.1e-253 878.6 1018 47.1
COL.COLO4_30797 Corchorus olitorius HOM05D001849 ORTHO05D004689 6.6e-253 878.2 968 47.9
Sopen12g023890 Solanum pennellii HOM05D001849 ORTHO05D004689 6.6e-253 878.2 965 48.3
Duzib235G0671 Durio zibethinus HOM05D001849 ORTHO05D004689 8.6e-253 877.9 966 48.1
QL05p003662 Quercus lobata HOM05D001849 ORTHO05D004689 2.5e-252 876.3 990 48.0
Thecc.06G124800 Theobroma cacao HOM05D001849 ORTHO05D004689 7.3e-252 874.8 964 48.1
TWI59G1440 Tripterygium wilfordii HOM05D001849 ORTHO05D004689 9.6e-252 874.4 969 47.7
TPR.G29992 Trifolium pratense HOM05D001849 ORTHO05D004689 4.7e-251 872.1 988 47.3
CiPaw.01G216000 Carya illinoinensis HOM05D001849 ORTHO05D004689 8.1e-251 871.3 969 48.3
PSO724G1390 Papaver somniferum HOM05D001849 ORTHO05D004689 4.0e-250 869.0 966 48.4
Sabra01G0127400 Salix brachista HOM05D001849 ORTHO05D004689 4.0e-250 869.0 974 47.7
PSO386G0179 Papaver somniferum HOM05D001849 ORTHO05D004689 2.0e-249 866.7 983 47.6
Psat4g166880 Pisum sativum HOM05D001849 ORTHO05D004689 3.4e-249 865.9 1002 46.8
Medtr8g022010 Medicago truncatula HOM05D001849 ORTHO05D004689 4.4e-249 865.5 978 48.0
PGR119G1999 Punica granatum HOM05D001849 ORTHO05D004689 5.8e-249 865.1 970 48.4
Ciclev10027090m.g Citrus clementina HOM05D001849 ORTHO05D004689 1.7e-248 863.6 972 47.4
Glyma.07G042000 Glycine max HOM05D001849 ORTHO05D004689 3.8e-248 862.4 980 47.9
VMungo0331G1611 Vigna mungo HOM05D001849 ORTHO05D004689 4.9e-248 862.1 985 47.7
Gohir.D09G079550 Gossypium hirsutum HOM05D001849 ORTHO05D004689 1.4e-247 860.5 991 46.9
Gorai.006G094800 Gossypium raimondii HOM05D001849 ORTHO05D004689 1.9e-247 860.1 991 46.9
EL10Ac7g16444 Beta vulgaris HOM05D001849 ORTHO05D004689 2.4e-247 859.8 1005 47.3
THA.LOC104822664 Tarenaya hassleriana HOM05D001849 ORTHO05D004689 5.4e-247 858.6 970 47.5
vmacro15054 Vaccinium macrocarpon HOM05D001849 ORTHO05D004689 4.6e-246 855.5 969 47.5
MD09G1178100 Malus domestica HOM05D001849 ORTHO05D004689 6.0e-246 855.1 972 47.1
RcHm_v2.0_Chr2g0146431 Rosa chinensis HOM05D001849 ORTHO05D004689 1.3e-245 854.0 970 46.7
Cfa003503 Carpinus fangiana HOM05D001849 ORTHO05D004689 1.7e-245 853.6 978 47.4
FvH4_6g35170 Fragaria vesca HOM05D001849 ORTHO05D004689 5.1e-245 852.0 966 47.4
Sp3g12380 Schrenkiella parvula HOM05D001849 ORTHO05D004689 5.1e-245 852.0 969 47.0
CANSAT56G0878 Cannabis sativa HOM05D001849 ORTHO05D004689 1.1e-244 850.9 1064 45.5
Aqoxy7G04006 Aquilegia oxysepala HOM05D001849 ORTHO05D004689 1.9e-244 850.1 965 46.7
Thhalv10019957m.g Eutrema salsugineum HOM05D001849 ORTHO05D004689 2.5e-244 849.7 969 46.6
DCAR_026423 Daucus carota HOM05D001849 ORTHO05D004689 4.3e-244 849.0 980 46.4
Phvul.010G127100 Phaseolus vulgaris HOM05D001849 ORTHO05D004689 5.6e-244 848.6 970 47.7
Carub.0003s1373 Capsella rubella HOM05D001849 ORTHO05D004689 1.3e-243 847.4 969 46.2
FAN05G2930 Fragaria x ananassa HOM05D001849 ORTHO05D004689 1.6e-243 847.0 968 47.0
Zm00001eb165950 Zea mays HOM05D001849 ORTHO05D004689 2.1e-243 846.7 994 46.7
A05p35330 Brassica napus HOM05D001849 ORTHO05D004689 2.8e-243 846.3 974 46.9
CSS0036951 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 3.6e-243 845.9 969 47.1
C05p53520 Brassica napus HOM05D001849 ORTHO05D004689 4.8e-243 845.5 974 46.8
arahy.Tifrunner.gnm1.ann1.1RN2YG Arachis hypogaea HOM05D001849 ORTHO05D004689 1.1e-242 844.3 971 46.7
BolC5t34029H Brassica oleracea HOM05D001849 ORTHO05D004689 1.4e-242 844.0 973 46.7
C01p50480 Brassica napus HOM05D001849 ORTHO05D004689 1.8e-242 843.6 1132 43.5
AL3G26350 Arabidopsis lyrata HOM05D001849 ORTHO05D004689 2.4e-242 843.2 974 45.9
Peaxi162Scf00177g00518 Petunia axillaris HOM05D001849 ORTHO05D004689 5.3e-242 842.0 982 46.6
BolC1t05000H Brassica oleracea HOM05D001849 ORTHO05D004689 1.2e-241 840.9 987 46.2
SMO304G0023 Selaginella moellendorffii HOM05D001849 ORTHO05D004689 4.4e-241 839.0 954 48.5
arahy.Tifrunner.gnm1.ann1.RMM65D Arachis hypogaea HOM05D001849 ORTHO05D004689 9.9e-241 837.8 972 46.7
BcaC05g29121 Brassica carinata HOM05D001849 ORTHO05D004689 1.3e-240 837.4 974 46.4
AT3G14120 Arabidopsis thaliana HOM05D001849 ORTHO05D004689 1.7e-240 837.0 974 45.6
ECA232G2821 Erigeron canadensis HOM05D001849 ORTHO05D004689 2.2e-240 836.6 969 46.2
CsaV3_7G034250 Cucumis sativus L. HOM05D001849 ORTHO05D004689 8.4e-240 834.7 954 47.4
SGA_v2.0_scaffold4G02078 Striga asiatica HOM05D001849 ORTHO05D004689 1.9e-239 833.6 968 45.8
FAN02G0489 Fragaria x ananassa HOM05D001849 ORTHO05D004689 1.2e-238 830.9 1024 44.7
Sed0016273 Sechium edule HOM05D001849 ORTHO05D004689 1.2e-238 830.9 969 46.6
FAN14G1459 Fragaria x ananassa HOM05D001849 ORTHO05D004689 7.9e-238 828.2 974 46.3
AUR62001443 Chenopodium quinoa HOM05D001849 ORTHO05D004689 5.1e-237 825.5 974 46.9
Aa31LG8G1350 Aethionema arabicum HOM05D001849 ORTHO05D004689 6.6e-237 825.1 1119 42.0
TAR626G0833 Trochodendron aralioides HOM05D001849 ORTHO05D004689 1.9e-236 823.5 859 51.3
GSVIVG01016717001 Vitis vinifera HOM05D001849 ORTHO05D004689 1.9e-236 823.5 885 49.3
Atru.chr2.1505 Acer truncatum HOM05D001849 ORTHO05D004689 7.3e-236 821.6 897 49.1
BraA05t22343Z Brassica rapa HOM05D001849 ORTHO05D004689 1.3e-235 820.8 1010 45.0
MD17G1148600 Malus domestica HOM05D001849 ORTHO05D004689 2.8e-235 819.7 976 46.2
HPP92_022009 Vanilla planifolia HOM05D001849 ORTHO05D004689 2.8e-235 819.7 980 46.3
AUR62009922 Chenopodium quinoa HOM05D001849 ORTHO05D004689 1.4e-234 817.4 1017 45.6
Lsat_1_v5_gn_4_91381 Lactuca sativa HOM05D001849 ORTHO05D004689 1.8e-234 817.0 974 44.7
HanXRQChr09g0277131 Helianthus annuus HOM05D001849 ORTHO05D004689 1.5e-233 813.9 972 45.8
ClCG09G001140 Citrullus lanatus HOM05D001849 ORTHO05D004689 3.4e-233 812.8 1031 44.7
Cc04_g01040 Coffea canephora HOM05D001849 ORTHO05D004689 2.9e-232 809.7 906 48.3
Eucgr.K02038 Eucalyptus grandis HOM05D001849 ORTHO05D004689 2.4e-231 806.6 876 49.4
SalBow7G1889 Salvia bowleyana HOM05D001849 ORTHO05D004689 6.0e-230 802.0 1094 41.4
FAN09G4066 Fragaria x ananassa HOM05D001849 ORTHO05D004689 3.9e-229 799.3 968 44.8
Hund18672 Selenicereus undatus HOM05D001849 ORTHO05D004689 3.9e-229 799.3 881 49.1
Lj9C535G6 Lonicera japonica HOM05D001849 ORTHO05D004689 1.1e-228 797.7 969 45.8
CSS0020628 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 5.6e-228 795.4 979 45.5
CAN.G1243.9 Capsicum annuum HOM05D001849 ORTHO05D004689 1.3e-227 794.3 871 48.8
Lalb_Chr10g0101321 Lupinus albus HOM05D001849 ORTHO05D004689 5.5e-223 778.9 874 47.6
CDE06G0404 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 1.2e-222 777.7 945 45.6
Nitab4.5_0000189g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 1.6e-219 767.3 832 49.3
Dinv20408 Davidia involucrata HOM05D001849 ORTHO05D004689 9.0e-218 761.5 829 48.9
CDE07G1134 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 2.6e-217 760.0 871 47.6
MELO3C024334.2 Cucumis melo HOM05D001849 ORTHO05D004689 1.9e-215 753.8 1062 41.7
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 7.2e-215 751.9 966 44.5
Migut.D00924 Erythranthe guttata HOM05D001849 ORTHO05D004689 2.9e-208 729.9 815 47.9
Haze_16076 Corylus avellana HOM05D001849 ORTHO05D004689 2.7e-206 723.4 1070 41.0
Actinidia32206 Actinidia chinensis HOM05D001849 ORTHO05D004689 3.9e-205 719.5 968 42.3
unitig_578.g16691 Utricularia gibba HOM05D001849 ORTHO05D004689 2.1e-198 697.2 927 42.6
Oeu008524.4 Olea europaea HOM05D001849 ORTHO05D004689 8.2e-195 685.3 1111 38.8
A01p39550 Brassica napus HOM05D001849 ORTHO05D004689 1.6e-185 654.4 1117 37.8
Hma1.2p1_0229F.1_g096770 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 3.8e-184 649.8 712 48.7
CSS0050059 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 2.3e-181 640.6 890 41.8
CSS0003623 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 2.8e-179 633.6 899 41.6
CBR_g39720 Chara braunii HOM05D001849 ORTHO05D004689 1.2e-169 601.7 1091 37.6
SHI25232 Sapria himalayana HOM05D001849 ORTHO05D004689 1.2e-158 565.1 818 40.0
Nitab4.5_0004322g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 2.2e-155 554.3 651 47.0
Hma1.2p1_0229F.1_g096760 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 1.1e-149 535.4 604 46.5
CARHR088980 Cardamine hirsuta HOM05D001849 ORTHO05D004689 5.4e-122 443.4 528 45.8
Ca_23411_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004689 4.8e-118 430.3 587 41.9
BraA01t03995Z Brassica rapa HOM05D001849 ORTHO05D004689 2.1e-113 414.8 543 44.8
Os11g0643700 Oryza sativa ssp. japonica HOM05D001849 ORTHO05D004689 3.9e-112 410.6 481 47.8
SEGI_21815 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 7.4e-111 406.4 400 54.2
Ca_23412_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004689 2.2e-94 351.7 406 49.5
Cpa.g.sc169.27 Carica papaya HOM05D001849 ORTHO05D004689 1.4e-69 269.2 323 47.4
FAN05G4033 Fragaria x ananassa HOM05D001849 ORTHO05D004689 4.2e-66 257.7 279 48.0
Cpa.g.sc169.28 Carica papaya HOM05D001849 ORTHO05D004689 7.3e-50 203.8 221 46.2
CSS0033574 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 3.9e-43 181.4 207 48.3
CSS0020573 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 2.0e-39 169.1 241 40.2
Cpa.g.sc169.30 Carica papaya HOM05D001849 ORTHO05D004689 4.1e-37 161.4 122 65.6
Glyma.16G010300 Glycine max HOM05D001849 ORTHO05D004689 2.1e-33 149.1 163 50.3
SEGI_09459 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 1.4e-32 146.4 148 50.7
QL11p014752 Quercus lobata HOM05D001849 ORTHO05D004689 2.3e-32 145.6 182 43.4
Cre10.g425675 Chlamydomonas reinhardtii HOM05D001849 ORTHO05D004689 2.2e-30 139.0 320 31.9
MCO04G165 Micromonas commoda HOM05D001849 ORTHO05D004689 2.3e-27 129.0 466 26.2
CSS0047517 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.5e-26 126.3 167 45.5
HPP92_021920 Vanilla planifolia HOM05D001849 ORTHO05D004689 5.6e-26 124.4 159 45.9
SEGI_30532 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 1.7e-22 112.8 89 64.0
CSS0019722 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.9e-21 109.4 168 42.9
PRCOL_00005073 Prasinoderma coloniale HOM05D001849 ORTHO05D004689 1.2e-20 106.7 630 24.6
Lsat_1_v5_gn_8_46020 Lactuca sativa HOM05D001849 ORTHO05D004689 5.6e-18 97.8 101 49.5
Lsat_1_v5_gn_3_42421 Lactuca sativa HOM05D001849 ORTHO05D004689 4.7e-17 94.7 166 33.1
HanXRQChr11g0341991 Helianthus annuus HOM05D001849 ORTHO05D004689 8.1e-17 94.0 89 51.7
MBI18_g40032_MAGBIO Magnolia biondii HOM05D000132 ORTHO05D000058 1.1e-16 93.6 100 48.0
SMO304G0058 Selaginella moellendorffii HOM05D042764 ORTHO05D004689 2.2e-14 85.9 190 33.7
Cpa.g.sc169.31 Carica papaya HOM05D001849 ORTHO05D004689 6.4e-14 84.3 85 49.4
SEGI_11558 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 7.8e-12 77.4 95 43.2
CSS0036362 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.0e-11 77.0 102 37.3
CSS0036461 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 3.9e-11 75.1 102 37.3
Lsat_1_v5_gn_7_52500 Lactuca sativa HOM05D001849 ORTHO05D004689 8.7e-11 73.9 174 31.6
CAN.G1243.8 Capsicum annuum HOM05D001849 ORTHO05D004689 1.5e-10 73.2 81 40.7
Cc04_g01050 Coffea canephora HOM05D001849 ORTHO05D004689 1.5e-10 73.2 85 36.5
Lalb_Chr10g0101331 Lupinus albus HOM05D001849 ORTHO05D004689 7.3e-10 70.9 86 39.5
GSVIVG01016718001 Vitis vinifera HOM05D001849 ORTHO05D004689 9.6e-10 70.5 96 37.5
Cpa.g.sc169.29 Carica papaya HOM05D001849 ORTHO05D004689 2.1e-09 69.3 103 35.9
Zm00001eb307710 Zea mays HOM05D001849 ORTHO05D004689 2.1e-09 69.3 71 56.3
SMO164G0082 Selaginella moellendorffii HOM05D027722 ORTHO05D004689 1.2e-07 63.5 172 33.7
SMO304G0098 Selaginella moellendorffii HOM05D027722 ORTHO05D004689 3.4e-07 62.0 185 28.6
SMO304G0054 Selaginella moellendorffii HOM05D027722 ORTHO05D004689 7.6e-07 60.8 185 28.6


User provided reference genes

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