Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_29610 Physcomitrium patens HOM05D006305 ORTHO05D007984 2.6e-226 788.5 428 100.0
HPP92_015091 Vanilla planifolia HOM05D006305 ORTHO05D007984 3.4e-101 372.9 349 57.0
Ca_10097_v3 Cicer arietinum L. HOM05D006305 ORTHO05D007984 7.6e-101 371.7 404 51.2
Medtr1g082570 Medicago truncatula HOM05D006305 ORTHO05D007984 7.6e-101 371.7 417 50.1
CDE11G1040 Ceratophyllum demersum HOM05D006305 ORTHO05D007984 2.2e-100 370.2 341 57.8
SMO146G0211 Selaginella moellendorffii HOM05D006305 ORTHO05D007984 2.9e-100 369.8 218 81.7
ATR0620G066 Amborella trichopoda HOM05D006305 ORTHO05D007984 3.8e-100 369.4 401 52.1
Manes.09G164300 Manihot esculenta HOM05D006305 ORTHO05D007984 3.2e-99 366.3 402 51.5
Mapoly0128s0010 Marchantia polymorpha HOM05D006305 ORTHO05D007984 7.1e-99 365.2 273 66.3
CBR_g4857 Chara braunii HOM05D006305 ORTHO05D007984 1.3e-97 360.9 252 67.9
SalBow6G6985 Salvia bowleyana HOM05D006305 ORTHO05D007984 2.3e-97 360.1 425 48.7
Phvul.007G181700 Phaseolus vulgaris HOM05D006305 ORTHO05D007984 6.6e-97 358.6 398 51.5
CAN.G479.41 Capsicum annuum HOM05D006305 ORTHO05D007984 8.7e-97 358.2 399 50.6
Psat0ss6702g0320 Pisum sativum HOM05D006305 ORTHO05D007984 8.7e-97 358.2 407 50.4
FAN14G0751 Fragaria x ananassa HOM05D006305 ORTHO05D007984 1.1e-96 357.8 402 51.5
FAN14G5210 Fragaria x ananassa HOM05D006305 ORTHO05D007984 1.1e-96 357.8 402 51.5
Hma1.2p1_0666F.1_g199520 Hydrangea macrophylla HOM05D006305 ORTHO05D007984 1.9e-96 357.1 327 55.7
BcaC05g30009 Brassica carinata HOM05D006305 ORTHO05D007984 3.3e-96 356.3 420 48.8
C05p61980 Brassica napus HOM05D006305 ORTHO05D007984 3.3e-96 356.3 420 48.8
CiPaw.07G015100 Carya illinoinensis HOM05D006305 ORTHO05D007984 3.3e-96 356.3 404 49.8
Eucgr.H04470 Eucalyptus grandis HOM05D006305 ORTHO05D007984 3.3e-96 356.3 400 50.0
FAN05G5097 Fragaria x ananassa HOM05D006305 ORTHO05D007984 4.3e-96 355.9 402 51.0
SGA_v2.0_scaffold34G13953 Striga asiatica HOM05D006305 ORTHO05D007984 4.3e-96 355.9 401 50.9
Atru.chr2.472 Acer truncatum HOM05D006305 ORTHO05D007984 5.6e-96 355.5 388 50.3
BolC5t34858H Brassica oleracea HOM05D006305 ORTHO05D007984 7.3e-96 355.1 420 48.6
FvH4_6g05460 Fragaria vesca HOM05D006305 ORTHO05D007984 9.6e-96 354.8 402 51.2
RcHm_v2.0_Chr3g0454231 Rosa chinensis HOM05D006305 ORTHO05D007984 9.6e-96 354.8 400 49.8
Dinv23970 Davidia involucrata HOM05D006305 ORTHO05D007984 2.1e-95 353.6 403 49.1
QL03p004578 Quercus lobata HOM05D006305 ORTHO05D007984 2.1e-95 353.6 411 48.7
Solyc03g115580.4 Solanum lycopersicum HOM05D006305 ORTHO05D007984 3.6e-95 352.8 337 55.5
Aqoxy5G04250 Aquilegia oxysepala HOM05D006305 ORTHO05D007984 6.2e-95 352.1 395 49.6
Glyma.10G156300 Glycine max HOM05D006305 ORTHO05D007984 6.2e-95 352.1 396 50.3
BcaC05g30168 Brassica carinata HOM05D006305 ORTHO05D007984 8.1e-95 351.7 430 47.4
CANSAT54G0217 Cannabis sativa HOM05D006305 ORTHO05D007984 1.1e-94 351.3 401 49.6
PGSC0003DMG400024658 Solanum tuberosum HOM05D006305 ORTHO05D007984 2.4e-94 350.1 340 56.2
Cc02_g33730 Coffea canephora HOM05D006305 ORTHO05D007984 3.1e-94 349.7 426 48.4
A05p42370 Brassica napus HOM05D006305 ORTHO05D007984 4.0e-94 349.4 407 47.4
BraA05t23013Z Brassica rapa HOM05D006305 ORTHO05D007984 4.0e-94 349.4 407 47.4
Ciclev10001229m.g Citrus clementina HOM05D006305 ORTHO05D007984 4.0e-94 349.4 325 56.9
FAN05G0068 Fragaria x ananassa HOM05D006305 ORTHO05D007984 4.0e-94 349.4 402 49.5
Sp3g04060 Schrenkiella parvula HOM05D006305 ORTHO05D007984 4.0e-94 349.4 428 46.7
TWI56G0624 Tripterygium wilfordii HOM05D006305 ORTHO05D007984 5.3e-94 349.0 409 48.9
Nitab4.5_0002756g0070 Nicotiana tabacum HOM05D006305 ORTHO05D007984 6.9e-94 348.6 432 47.9
Thecc.05G307300 Theobroma cacao HOM05D006305 ORTHO05D007984 1.2e-93 347.8 406 48.5
VMungo0720G1654 Vigna mungo HOM05D006305 ORTHO05D007984 1.5e-93 347.4 397 50.4
Migut.F01514 Erythranthe guttata HOM05D006305 ORTHO05D007984 2.0e-93 347.1 403 50.4
Gohir.D13G179200 Gossypium hirsutum HOM05D006305 ORTHO05D007984 2.0e-93 347.1 381 50.9
Lsat_1_v5_gn_2_67520 Lactuca sativa HOM05D006305 ORTHO05D007984 2.0e-93 347.1 407 48.2
Lj9A683T26 Lonicera japonica HOM05D006305 ORTHO05D007984 2.0e-93 347.1 408 49.5
GSVIVG01000016001 Vitis vinifera HOM05D006305 ORTHO05D007984 2.0e-93 347.1 407 50.1
MD04G1208500 Malus domestica HOM05D006305 ORTHO05D007984 2.6e-93 346.7 414 49.0
arahy.Tifrunner.gnm1.ann1.84BFE2 Arachis hypogaea HOM05D006305 ORTHO05D007984 3.4e-93 346.3 400 49.5
Gorai.013G204500 Gossypium raimondii HOM05D006305 ORTHO05D007984 3.4e-93 346.3 383 50.7
Rhsim05G0143900 Rhododendron simsii HOM05D006305 ORTHO05D007984 4.4e-93 345.9 421 46.1
ClCG08G002270 Citrullus lanatus HOM05D006305 ORTHO05D007984 5.8e-93 345.5 335 54.9
Potri.005G036700 Populus trichocarpa HOM05D006305 ORTHO05D007984 5.8e-93 345.5 422 48.1
CSS0018445 Camellia sinensis var. sinensis HOM05D006305 ORTHO05D007984 7.6e-93 345.1 377 51.5
EL10Ac4g09328 Beta vulgaris HOM05D006305 ORTHO05D007984 9.9e-93 344.7 409 48.7
Sopen03g034570 Solanum pennellii HOM05D006305 ORTHO05D007984 9.9e-93 344.7 338 55.0
Thhalv10020823m.g Eutrema salsugineum HOM05D006305 ORTHO05D007984 1.7e-92 344.0 418 46.7
Carub.0003s0446 Capsella rubella HOM05D006305 ORTHO05D007984 2.2e-92 343.6 396 49.0
Lj5g0026498 Lotus japonicus HOM05D006305 ORTHO05D007984 3.8e-92 342.8 402 47.8
TAR636G3548 Trochodendron aralioides HOM05D006305 ORTHO05D007984 4.9e-92 342.4 401 48.6
CSS0021232 Camellia sinensis var. sinensis HOM05D006305 ORTHO05D007984 8.4e-92 341.7 388 49.7
Gohir.A13G173500 Gossypium hirsutum HOM05D006305 ORTHO05D007984 8.4e-92 341.7 401 48.9
Lalb_Chr02g0148341 Lupinus albus HOM05D006305 ORTHO05D007984 1.1e-91 341.3 400 49.8
PGR031G3204 Punica granatum HOM05D006305 ORTHO05D007984 1.4e-91 340.9 423 48.0
Zm00001eb043410 Zea mays HOM05D006305 ORTHO05D007984 1.9e-91 340.5 324 54.3
DCAR_029432 Daucus carota HOM05D006305 ORTHO05D007984 3.2e-91 339.7 421 46.8
Peaxi162Scf00274g00026 Petunia axillaris HOM05D006305 ORTHO05D007984 3.2e-91 339.7 463 44.1
AL3G15630 Arabidopsis lyrata HOM05D006305 ORTHO05D007984 4.2e-91 339.3 408 46.6
arahy.Tifrunner.gnm1.ann1.39Z7HW Arachis hypogaea HOM05D006305 ORTHO05D007984 5.4e-91 339.0 406 48.8
Os10g0518900 Oryza sativa ssp. japonica HOM05D006305 ORTHO05D007984 9.3e-91 338.2 275 59.3
unitig_746.g26625 Utricularia gibba HOM05D006305 ORTHO05D007984 9.3e-91 338.2 312 56.7
FAN02G0061 Fragaria x ananassa HOM05D006305 ORTHO05D007984 1.6e-90 337.4 336 53.6
Hund21683 Selenicereus undatus HOM05D006305 ORTHO05D007984 3.0e-89 333.2 411 46.2
Ah.06g189130 Amaranthus hybridus HOM05D006305 ORTHO05D007984 3.9e-89 332.8 430 45.3
Aa31LG5G15590 Aethionema arabicum HOM05D006305 ORTHO05D007984 1.9e-88 330.5 417 45.6
COL.COLO4_19840 Corchorus olitorius HOM05D006305 ORTHO05D007984 3.3e-88 329.7 206 74.8
Sabra05G0037100 Salix brachista HOM05D006305 ORTHO05D007984 3.3e-88 329.7 332 53.3
ECA238G3439 Erigeron canadensis HOM05D006305 ORTHO05D007984 4.3e-88 329.3 398 48.0
MSTRG.306 Avicennia marina HOM05D006305 ORTHO05D007984 9.6e-88 328.2 413 47.2
MELO3C025022.2 Cucumis melo HOM05D006305 ORTHO05D007984 9.6e-88 328.2 258 63.2
THA.LOC104820089 Tarenaya hassleriana HOM05D006305 ORTHO05D007984 9.6e-88 328.2 435 44.4
HanXRQChr15g0472081 Helianthus annuus HOM05D006305 ORTHO05D007984 1.6e-87 327.4 320 55.3
AUR62000888 Chenopodium quinoa HOM05D006305 ORTHO05D007984 1.1e-86 324.7 283 59.4
CsaV3_6G002610 Cucumis sativus L. HOM05D006305 ORTHO05D007984 1.8e-86 323.9 261 62.1
MBI04_g21739_MAGBIO Magnolia biondii HOM05D006305 ORTHO05D007984 4.0e-86 322.8 270 60.7
AUR62005086 Chenopodium quinoa HOM05D006305 ORTHO05D007984 9.0e-86 321.6 280 58.9
PSO782G4398 Papaver somniferum HOM05D006305 ORTHO05D007984 1.2e-85 321.2 319 54.5
BcaC05g30019 Brassica carinata HOM05D006305 ORTHO05D007984 2.0e-85 320.5 420 45.5
AagrBONN_evm.TU.Sc2ySwM_369.531 Anthoceros agrestis HOM05D006305 ORTHO05D007984 1.7e-84 317.4 281 59.8
Prupe.6G329400 Prunus persica HOM05D006305 ORTHO05D007984 1.7e-84 317.4 274 58.8
Sed0018566 Sechium edule HOM05D006305 ORTHO05D007984 2.9e-84 316.6 251 63.7
vmacro19639 Vaccinium macrocarpon HOM05D006305 ORTHO05D007984 6.4e-84 315.5 276 58.0
Nn3g18889 Nelumbo nucifera HOM05D006305 ORTHO05D007984 1.9e-83 313.9 308 53.9
PSO063G7033 Papaver somniferum HOM05D006305 ORTHO05D007984 2.1e-82 310.5 403 46.2
Cfa006552 Carpinus fangiana HOM05D006305 ORTHO05D007984 7.9e-82 308.5 323 52.9
AT3G05210 Arabidopsis thaliana HOM05D006305 ORTHO05D007984 5.7e-72 275.8 286 51.0
TPR.G22794 Trifolium pratense HOM05D006305 ORTHO05D007984 9.3e-67 258.5 229 59.8
Haze_04230 Corylus avellana HOM05D006305 ORTHO05D007984 5.1e-65 252.7 439 39.2
Cre03.g196651 Chlamydomonas reinhardtii HOM05D006305 ORTHO05D007984 1.1e-64 251.5 223 57.0
Ciclev10002028m.g Citrus clementina HOM05D006305 ORTHO05D007984 9.7e-64 248.4 251 53.0
Sc16g0008400 Simmondsia chinensis HOM05D006305 ORTHO05D007984 5.3e-62 242.7 200 60.0
Hma1.2p1_0666F.1_g199530 Hydrangea macrophylla HOM05D006305 ORTHO05D007984 4.5e-61 239.6 154 74.7
Ciclev10003828m.g Citrus clementina HOM05D006305 ORTHO05D007984 2.9e-60 236.9 250 51.2
CARHR079550 Cardamine hirsuta HOM05D006305 ORTHO05D007984 5.0e-60 236.1 154 72.1
MBI04_g44620_MAGBIO Magnolia biondii HOM05D006305 ORTHO05D007984 1.2e-58 231.5 140 78.6
Cpa.g.sc1183.2 Carica papaya HOM05D006305 ORTHO05D007984 1.2e-53 214.9 392 37.8
Nitab4.5_0001211g0080 Nicotiana tabacum HOM05D006305 ORTHO05D007984 9.4e-51 205.3 427 36.1
Duzib106G1918 Durio zibethinus HOM05D006305 ORTHO05D007984 2.0e-48 197.6 388 36.9
PRCOL_00003423 Prasinoderma coloniale HOM05D006305 ORTHO05D007984 1.9e-43 181.0 187 49.7
Pp3c16_18520 Physcomitrium patens HOM05D006305 ORTHO05D007984 2.8e-39 167.2 188 52.1
Ciclev10003373m.g Citrus clementina HOM05D006305 ORTHO05D007984 8.2e-39 165.6 306 37.9
Cfa026476 Carpinus fangiana HOM05D006305 ORTHO05D007984 4.1e-38 163.3 308 33.1
MCO01G606 Micromonas commoda HOM05D006305 ORTHO05D007984 7.5e-32 142.5 211 37.0
Ciclev10003460m.g Citrus clementina HOM05D006305 ORTHO05D007984 2.7e-29 134.0 257 35.8
SalBow6G3462 Salvia bowleyana HOM05D006305 ORTHO05D007984 1.7e-20 104.8 201 34.8
TPR.G7405 Trifolium pratense HOM05D006305 ORTHO05D007984 3.0e-17 94.0 113 46.0
Glyma.20G232002 Glycine max HOM05D006305 ORTHO05D007984 4.9e-15 86.7 61 70.5
MELO3C033326.2 Cucumis melo HOM05D006305 ORTHO05D168382 6.8e-09 66.2 34 79.4


User provided reference genes

Program Settings