Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_25240 Physcomitrium patens HOM05D005380 ORTHO05D006601 0.0e+00 2131.7 1110 100.0
Mapoly0029s0138 Marchantia polymorpha HOM05D005380 ORTHO05D006601 2.8e-248 862.8 981 49.9
AagrBONN_evm.TU.Sc2ySwM_362.853 Anthoceros agrestis HOM05D005380 ORTHO05D006601 4.5e-206 722.6 1210 40.3
SEGI_33229 Sequoiadendron giganteum HOM05D005380 ORTHO05D006601 1.1e-204 718.0 820 48.3
MBI10_g16336_MAGBIO Magnolia biondii HOM05D005380 ORTHO05D006601 4.3e-196 689.5 959 43.0
GSVIVG01013627001 Vitis vinifera HOM05D005380 ORTHO05D006601 2.0e-190 670.6 964 41.9
Thecc.06G135400 Theobroma cacao HOM05D005380 ORTHO05D006601 3.5e-190 669.8 964 41.2
Hund06739 Selenicereus undatus HOM05D005380 ORTHO05D006601 4.6e-190 669.5 1036 40.8
Eucgr.E02010 Eucalyptus grandis HOM05D005380 ORTHO05D006601 5.9e-190 669.1 963 41.2
Gorai.011G051400 Gossypium raimondii HOM05D005380 ORTHO05D006601 5.9e-190 669.1 967 41.7
arahy.Tifrunner.gnm1.ann1.UEF6CF Arachis hypogaea HOM05D005380 ORTHO05D006601 7.8e-190 668.7 977 40.8
Ciclev10014143m.g Citrus clementina HOM05D005380 ORTHO05D006601 7.8e-190 668.7 802 46.6
ATR0743G092 Amborella trichopoda HOM05D005380 ORTHO05D006601 3.9e-189 666.4 848 44.5
Potri.001G081900 Populus trichocarpa HOM05D005380 ORTHO05D006601 6.6e-189 665.6 964 41.2
Atru.chr10.630_Atru.chr10.631 Acer truncatum HOM05D005380 ORTHO05D006601 1.1e-188 664.8 962 41.0
Manes.11G052180 Manihot esculenta HOM05D005380 ORTHO05D006601 1.1e-188 664.8 935 41.7
arahy.Tifrunner.gnm1.ann1.GT0B0E Arachis hypogaea HOM05D005380 ORTHO05D006601 1.5e-188 664.5 983 40.9
TWI09G1549 Tripterygium wilfordii HOM05D005380 ORTHO05D006601 1.9e-188 664.1 990 39.9
CANSAT80G1059 Cannabis sativa HOM05D005380 ORTHO05D006601 3.3e-188 663.3 796 46.7
Atru.chr10.626 Acer truncatum HOM05D005380 ORTHO05D006601 4.3e-188 662.9 962 40.9
RcHm_v2.0_Chr5g0019211 Rosa chinensis HOM05D005380 ORTHO05D006601 2.1e-187 660.6 968 41.3
Gohir.D10G048301 Gossypium hirsutum HOM05D005380 ORTHO05D006601 2.8e-187 660.2 967 41.5
FvH4_3g11790 Fragaria vesca HOM05D005380 ORTHO05D006601 6.2e-187 659.1 793 46.0
Cfa000719 Carpinus fangiana HOM05D005380 ORTHO05D006601 1.4e-186 657.9 1102 37.0
Lj3g0005152 Lotus japonicus HOM05D005380 ORTHO05D006601 1.8e-186 657.5 960 40.7
CSS0002209 Camellia sinensis var. sinensis HOM05D005380 ORTHO05D006601 3.1e-186 656.8 956 41.9
QL11p017903 Quercus lobata HOM05D005380 ORTHO05D006601 3.1e-186 656.8 964 40.5
Duzib192G0856 Durio zibethinus HOM05D005380 ORTHO05D006601 6.8e-186 655.6 980 40.5
PSO357G0674 Papaver somniferum HOM05D005380 ORTHO05D006601 8.9e-186 655.2 984 39.3
PGR083G1975 Punica granatum HOM05D005380 ORTHO05D006601 1.5e-185 654.4 971 40.3
MD10G1238900 Malus domestica HOM05D005380 ORTHO05D006601 3.4e-185 653.3 986 40.2
Potri.003G148700 Populus trichocarpa HOM05D005380 ORTHO05D006601 4.4e-185 652.9 963 40.7
Dinv01434 Davidia involucrata HOM05D005380 ORTHO05D006601 1.3e-184 651.4 1096 38.2
Hma1.2p1_1380F.1_g279310 Hydrangea macrophylla HOM05D005380 ORTHO05D006601 2.9e-184 650.2 890 42.4
Sc10g0009350 Simmondsia chinensis HOM05D005380 ORTHO05D006601 2.9e-184 650.2 937 41.3
PSO170G0871 Papaver somniferum HOM05D005380 ORTHO05D006601 6.4e-184 649.0 983 39.3
Sabra03G0108200 Salix brachista HOM05D005380 ORTHO05D006601 3.2e-183 646.7 966 39.9
HanXRQChr14g0457361 Helianthus annuus HOM05D005380 ORTHO05D006601 1.6e-182 644.4 964 40.2
Prupe.4G105500 Prunus persica HOM05D005380 ORTHO05D006601 1.6e-182 644.4 795 46.3
CiPaw.10G065000 Carya illinoinensis HOM05D005380 ORTHO05D006601 2.0e-182 644.0 780 45.3
VMungo0331G1684 Vigna mungo HOM05D005380 ORTHO05D006601 3.5e-182 643.3 964 40.7
Lalb_Chr07g0194321 Lupinus albus HOM05D005380 ORTHO05D006601 4.6e-182 642.9 959 40.1
Glyma.03G103900 Glycine max HOM05D005380 ORTHO05D006601 1.0e-181 641.7 968 39.8
DCAR_003768 Daucus carota HOM05D005380 ORTHO05D006601 1.7e-181 641.0 983 39.2
TPR.G31565 Trifolium pratense HOM05D005380 ORTHO05D006601 3.0e-181 640.2 849 43.5
Ca_23214_v3 Cicer arietinum L. HOM05D005380 ORTHO05D006601 5.0e-181 639.4 961 40.8
MELO3C021785.2 Cucumis melo HOM05D005380 ORTHO05D006601 1.5e-180 637.9 967 40.6
Sopen05g010460 Solanum pennellii HOM05D005380 ORTHO05D006601 1.9e-180 637.5 843 42.9
Cc09_g06540 Coffea canephora HOM05D005380 ORTHO05D006601 3.3e-180 636.7 788 45.3
Medtr8g012560 Medicago truncatula HOM05D005380 ORTHO05D006601 3.3e-180 636.7 985 40.0
Ah.14g085840 Amaranthus hybridus HOM05D005380 ORTHO05D006601 1.1e-178 631.7 994 39.4
CDE02G1822 Ceratophyllum demersum HOM05D005380 ORTHO05D006601 1.8e-178 630.9 973 39.7
Glyma.07G119900 Glycine max HOM05D005380 ORTHO05D006601 1.8e-178 630.9 1045 38.7
CsaV3_1G046710 Cucumis sativus L. HOM05D005380 ORTHO05D006601 5.2e-178 629.4 998 39.6
Lsat_1_v5_gn_4_38401 Lactuca sativa HOM05D005380 ORTHO05D006601 5.2e-178 629.4 813 43.8
Nitab4.5_0002174g0030 Nicotiana tabacum HOM05D005380 ORTHO05D006601 5.2e-178 629.4 984 39.2
ECA234G0325 Erigeron canadensis HOM05D005380 ORTHO05D006601 3.7e-176 623.2 963 38.7
CAN.G890.49 Capsicum annuum HOM05D005380 ORTHO05D006601 8.3e-176 622.1 806 43.3
Nitab4.5_0005179g0030 Nicotiana tabacum HOM05D005380 ORTHO05D006601 8.3e-176 622.1 806 43.2
Peaxi162Scf00128g01143 Petunia axillaris HOM05D005380 ORTHO05D006601 1.4e-175 621.3 849 41.8
SMO146G0159 Selaginella moellendorffii HOM05D005380 ORTHO05D006601 1.4e-175 621.3 1083 38.0
Sed0014613 Sechium edule HOM05D005380 ORTHO05D006601 2.4e-175 620.5 1083 37.7
vmacro04057 Vaccinium macrocarpon HOM05D005380 ORTHO05D006601 1.6e-174 617.8 899 41.0
ECA247G3537 Erigeron canadensis HOM05D005380 ORTHO05D006601 2.7e-174 617.1 797 44.3
HPP92_023728 Vanilla planifolia HOM05D005380 ORTHO05D006601 3.5e-174 616.7 939 39.2
CSS0007558 Camellia sinensis var. sinensis HOM05D005380 ORTHO05D006601 2.3e-173 614.0 959 40.0
MD05G1259300 Malus domestica HOM05D005380 ORTHO05D006601 3.0e-173 613.6 1034 37.4
Os05g0104100 Oryza sativa ssp. japonica HOM05D005380 ORTHO05D006601 3.9e-173 613.2 876 40.8
Zm00001eb267510 Zea mays HOM05D005380 ORTHO05D006601 1.1e-172 611.7 794 42.7
Aqoxy5G03588 Aquilegia oxysepala HOM05D005380 ORTHO05D006601 1.9e-172 610.9 976 39.0
Migut.M01950 Erythranthe guttata HOM05D005380 ORTHO05D006601 2.1e-171 607.4 910 41.1
FAN25G3771 Fragaria x ananassa HOM05D005380 ORTHO05D006601 6.2e-171 605.9 966 38.9
FAN21G3255 Fragaria x ananassa HOM05D005380 ORTHO05D006601 1.8e-170 604.4 955 38.6
Oeu000486.1 Olea europaea HOM05D005380 ORTHO05D006601 3.1e-170 603.6 974 39.1
FAN16G1170 Fragaria x ananassa HOM05D005380 ORTHO05D006601 6.8e-170 602.4 963 38.7
COL.COLO4_30926 Corchorus olitorius HOM05D005380 ORTHO05D006601 2.6e-169 600.5 735 45.9
A09p41900 Brassica napus HOM05D005380 ORTHO05D006601 2.2e-168 597.4 971 38.4
THA.LOC104810347 Tarenaya hassleriana HOM05D005380 ORTHO05D006601 2.9e-168 597.0 784 43.6
BcaC05g26192 Brassica carinata HOM05D005380 ORTHO05D006601 8.4e-168 595.5 969 38.1
BraA09t39678Z Brassica rapa HOM05D005380 ORTHO05D006601 1.4e-167 594.7 971 38.2
C05p21950 Brassica napus HOM05D005380 ORTHO05D006601 3.2e-167 593.6 969 38.1
EL10Ac8g19470 Beta vulgaris HOM05D005380 ORTHO05D006601 5.4e-167 592.8 977 38.6
BcaB07g32281 Brassica carinata HOM05D005380 ORTHO05D006601 7.1e-167 592.4 969 37.6
BolC5t30892H Brassica oleracea HOM05D003679 ORTHO05D004265 1.1e-164 585.1 969 37.4
SGA_v2.0_scaffold223G42899 Striga asiatica HOM05D005380 ORTHO05D006601 1.1e-164 585.1 791 42.9
MSTRG.12176 Avicennia marina HOM05D005380 ORTHO05D006601 1.6e-163 581.3 784 43.5
CARHR023210 Cardamine hirsuta HOM05D005380 ORTHO05D006601 2.8e-163 580.5 785 42.0
Carub.0001s2236 Capsella rubella HOM05D005380 ORTHO05D006601 3.6e-163 580.1 785 42.4
Haze_06032 Corylus avellana HOM05D005380 ORTHO05D006601 3.4e-161 573.5 1150 34.3
AUR62042012 Chenopodium quinoa HOM05D005380 ORTHO05D006601 1.7e-160 571.2 970 37.8
Phvul.010G053600 Phaseolus vulgaris HOM05D005380 ORTHO05D006601 9.3e-159 565.5 886 40.0
AL1G36400 Arabidopsis lyrata HOM05D005380 ORTHO05D006601 4.6e-158 563.1 751 43.1
Sp1g20340 Schrenkiella parvula HOM05D005380 ORTHO05D006601 6.6e-157 559.3 929 37.8
ClCG01G008980 Citrullus lanatus HOM05D005380 ORTHO05D006601 1.9e-156 557.8 1101 35.5
AT1G22860 Arabidopsis thaliana HOM05D005380 ORTHO05D006601 1.2e-153 548.5 929 38.2
AUR62043348 Chenopodium quinoa HOM05D005380 ORTHO05D006601 2.6e-153 547.4 785 41.4
TAR365G0677 Trochodendron aralioides HOM05D005380 ORTHO05D006601 4.5e-153 546.6 650 46.9
Duzib235G1486 Durio zibethinus HOM05D005380 ORTHO05D006601 4.9e-152 543.1 695 45.0
Nn1g01426 Nelumbo nucifera HOM05D005380 ORTHO05D006601 3.9e-149 533.5 634 46.4
Rhsim13G0198600 Rhododendron simsii HOM05D005380 ORTHO05D006601 8.7e-149 532.3 977 36.3
Aa31LG7G6850 Aethionema arabicum HOM05D005380 ORTHO05D006601 5.6e-148 529.6 983 35.7
Psat4g204440 Pisum sativum HOM05D005380 ORTHO05D006601 1.8e-146 524.6 804 40.2
Manes.16G057200 Manihot esculenta HOM05D005380 ORTHO05D006601 1.0e-141 508.8 811 38.5
Thhalv10006692m.g Eutrema salsugineum HOM05D005380 ORTHO05D006601 7.9e-126 456.1 825 35.8
BcaNung06594 Brassica carinata HOM05D005380 ORTHO05D006601 4.3e-124 450.3 948 34.1
CBR_g10913 Chara braunii HOM05D005380 ORTHO05D006601 5.3e-122 443.4 1210 29.8
unitig_747.g21990 Utricularia gibba HOM05D005380 ORTHO05D006601 1.7e-112 411.8 658 38.4
Actinidia12893 Actinidia chinensis HOM05D005380 ORTHO05D006601 4.0e-93 347.4 451 44.8
Lj1A1141T73 Lonicera japonica HOM05D005380 ORTHO05D006601 2.3e-88 331.6 422 44.5
SalBow8G2602 Salvia bowleyana HOM05D005380 ORTHO05D006601 1.4e-82 312.4 459 39.9
SalBow8G4959 Salvia bowleyana HOM05D005380 ORTHO05D006601 1.4e-82 312.4 459 39.9
CDE04G2683 Ceratophyllum demersum HOM05D005380 ORTHO05D006601 1.2e-81 309.3 628 34.2
PRCOL_00002861 Prasinoderma coloniale HOM05D005380 ORTHO05D006601 4.1e-74 284.3 927 29.8
Cpa.g.sc21.90 Carica papaya HOM05D005380 ORTHO05D006601 2.7e-73 281.6 341 46.3
Solyc05g015210.4 Solanum lycopersicum HOM05D005380 ORTHO05D006601 1.8e-69 268.9 418 38.0
Lj1A1141T72 Lonicera japonica HOM05D005380 ORTHO05D006601 8.3e-67 260.0 473 36.2
CSS0038991 Camellia sinensis var. sinensis HOM05D005380 ORTHO05D006601 2.1e-49 202.2 252 41.7
SHI20665 Sapria himalayana HOM05D005380 ORTHO05D006601 1.4e-45 189.5 167 55.7
QL05p013204 Quercus lobata HOM05D005380 ORTHO05D006601 2.4e-45 188.7 276 38.0
TWI53G1262 Tripterygium wilfordii HOM05D005380 ORTHO05D006601 1.9e-39 169.1 158 55.1
SEGI_30953 Sequoiadendron giganteum HOM05D005380 ORTHO05D006601 3.7e-30 138.3 336 32.7
arahy.Tifrunner.gnm1.ann1.BZI3ML Arachis hypogaea HOM05D005380 ORTHO05D006601 2.4e-29 135.6 176 41.5
Cre17.g709400 Chlamydomonas reinhardtii HOM05D005380 ORTHO05D006601 2.7e-25 122.1 231 33.8
QL10p043084 Quercus lobata HOM05D005380 ORTHO05D006601 8.4e-19 100.5 123 40.7
CDE04G3530 Ceratophyllum demersum HOM05D005380 ORTHO05D006601 1.2e-17 96.7 80 58.8
QL10p044954 Quercus lobata HOM05D004535 ORTHO05D005341 2.7e-17 95.5 126 38.9
Cpa.g.sc21.93 Carica papaya HOM05D005380 ORTHO05D006601 4.6e-17 94.7 104 48.1
Cpa.g.sc21.92 Carica papaya HOM05D005380 ORTHO05D006601 1.0e-16 93.6 70 58.6
QL09p040316 Quercus lobata HOM05D005380 ORTHO05D006601 1.1e-15 90.1 113 41.6
Gorai.003G015100 Gossypium raimondii HOM05D004035 ORTHO05D004631 5.7e-15 87.8 859 20.0
Cpa.g.sc21.91 Carica papaya HOM05D005380 ORTHO05D006601 7.6e-12 77.4 121 40.5
QL05p013201 Quercus lobata HOM05D005380 ORTHO05D006601 3.8e-11 75.1 119 39.5
Hma1.2p1_0537F.1_g174360 Hydrangea macrophylla HOM05D005380 ORTHO05D006601 1.4e-10 73.2 239 27.6
Medtr5g020140 Medicago truncatula HOM05D004035 ORTHO05D004631 5.5e-10 71.2 791 21.2
AUR62014043 Chenopodium quinoa HOM05D001015 ORTHO05D000881 2.1e-09 69.3 124 34.7
Mapoly0160s0027 Marchantia polymorpha HOM05D004035 ORTHO05D004631 2.3e-08 65.9 159 27.0
Pp3c10_5300 Physcomitrium patens HOM05D004035 ORTHO05D004631 1.9e-07 62.8 113 30.1
Actinidia22453 Actinidia chinensis HOM05D005380 ORTHO05D006601 2.2e-06 59.3 106 34.9
Gohir.D03G014800 Gossypium hirsutum HOM05D004035 ORTHO05D004631 2.2e-06 59.3 703 19.8
QL09p040321 Quercus lobata HOM05D005380 ORTHO05D006601 2.2e-06 59.3 58 51.7
Lalb_Chr09g0322391 Lupinus albus HOM05D004035 ORTHO05D004631 6.3e-06 57.8 121 28.9


User provided reference genes

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