Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_10400 Physcomitrium patens HOM05D005824 ORTHO05D007029 0.0e+00 1603.6 908 100.0
Mapoly0075s0015 Marchantia polymorpha HOM05D005824 ORTHO05D007029 6.6e-70 270.0 894 30.1
MBI19_g32704_MAGBIO Magnolia biondii HOM05D005824 ORTHO05D007029 2.4e-64 251.5 896 29.5
THA.LOC104821746 Tarenaya hassleriana HOM05D005824 ORTHO05D007029 7.8e-63 246.5 883 28.5
Dinv24497 Davidia involucrata HOM05D005824 ORTHO05D007029 3.0e-62 244.6 877 28.1
CSS0029355 Camellia sinensis var. sinensis HOM05D005824 ORTHO05D007029 6.6e-62 243.4 883 29.1
Potri.015G010900 Populus trichocarpa HOM05D005824 ORTHO05D007029 1.1e-61 242.7 883 27.6
SalBow7G3942 Salvia bowleyana HOM05D005824 ORTHO05D007029 1.5e-61 242.3 885 27.2
Sabra15G0009000 Salix brachista HOM05D005824 ORTHO05D007029 2.5e-61 241.5 884 27.0
Glyma.02G192500 Glycine max HOM05D005824 ORTHO05D007029 3.3e-61 241.1 918 27.5
GSVIVG01031305001 Vitis vinifera HOM05D005824 ORTHO05D007029 4.7e-60 237.3 903 27.4
arahy.Tifrunner.gnm1.ann1.S86EGP Arachis hypogaea HOM05D005824 ORTHO05D007029 1.1e-59 236.1 890 27.4
Gohir.A03G155800 Gossypium hirsutum HOM05D005824 ORTHO05D007029 1.4e-59 235.7 894 27.3
Psat6g118640 Pisum sativum HOM05D005824 ORTHO05D007029 5.2e-59 233.8 881 27.6
Lalb_Chr02g0154321 Lupinus albus HOM05D005824 ORTHO05D007029 8.9e-59 233.0 883 27.3
Medtr1g055080 Medicago truncatula HOM05D005824 ORTHO05D007029 8.9e-59 233.0 886 27.2
Sopen01g044470 Solanum pennellii HOM05D005824 ORTHO05D007029 2.0e-58 231.9 887 28.4
arahy.Tifrunner.gnm1.ann1.E5V6X9 Arachis hypogaea HOM05D005824 ORTHO05D007029 4.4e-58 230.7 887 27.1
Gorai.005G200700 Gossypium raimondii HOM05D005824 ORTHO05D007029 9.9e-58 229.6 885 27.8
Thecc.09G352900 Theobroma cacao HOM05D005824 ORTHO05D007029 1.3e-57 229.2 881 27.1
Cc02_g35570 Coffea canephora HOM05D005824 ORTHO05D007029 2.9e-57 228.0 908 27.6
PGSC0003DMG400018251 Solanum tuberosum HOM05D005824 ORTHO05D007029 6.4e-57 226.9 890 28.0
TPR.G12910 Trifolium pratense HOM05D005824 ORTHO05D007029 8.3e-57 226.5 884 27.6
QL07p026733 Quercus lobata HOM05D005824 ORTHO05D007029 1.4e-56 225.7 886 27.4
Rhsim11G0099700 Rhododendron simsii HOM05D005824 ORTHO05D007029 1.9e-56 225.3 888 26.9
Eucgr.B01798 Eucalyptus grandis HOM05D005824 ORTHO05D007029 2.4e-56 224.9 901 28.6
CANSAT54G1845 Cannabis sativa HOM05D005824 ORTHO05D007029 3.2e-56 224.6 887 27.3
Glyma.10G084300 Glycine max HOM05D005824 ORTHO05D007029 4.1e-56 224.2 889 27.7
TPR.G21237 Trifolium pratense HOM05D005824 ORTHO05D007029 4.1e-56 224.2 897 27.9
Lj3g0001001 Lotus japonicus HOM05D005824 ORTHO05D007029 7.1e-56 223.4 885 27.1
Gohir.D02G178900 Gossypium hirsutum HOM05D005824 ORTHO05D007029 2.1e-55 221.9 889 28.6
Atru.chr12.1601 Acer truncatum HOM05D005824 ORTHO05D007029 1.3e-54 219.2 889 27.4
AL6G38630 Arabidopsis lyrata HOM05D005824 ORTHO05D007029 1.3e-54 219.2 919 27.3
Ca_11665_v3 Cicer arietinum L. HOM05D005824 ORTHO05D007029 1.3e-54 219.2 904 26.1
Migut.B00860 Erythranthe guttata HOM05D005824 ORTHO05D007029 1.7e-54 218.8 883 26.0
Sp2g21220 Schrenkiella parvula HOM05D005824 ORTHO05D007029 1.7e-54 218.8 884 27.3
VMungo0720G2244 Vigna mungo HOM05D005824 ORTHO05D007029 1.7e-54 218.8 890 26.0
Lj5g0026124 Lotus japonicus HOM05D005824 ORTHO05D007029 2.3e-54 218.4 886 26.9
Hund21844 Selenicereus undatus HOM05D005824 ORTHO05D007029 3.0e-54 218.0 918 27.6
CiPaw.10G020000 Carya illinoinensis HOM05D005824 ORTHO05D007029 5.1e-54 217.2 918 26.7
Thhalv10003721m.g Eutrema salsugineum HOM05D005824 ORTHO05D007029 5.1e-54 217.2 894 27.2
Sc09g0002470 Simmondsia chinensis HOM05D005824 ORTHO05D007029 5.1e-54 217.2 880 27.6
Carub.0006s2449 Capsella rubella HOM05D005824 ORTHO05D007029 6.6e-54 216.9 912 27.1
CAN.G1374.10 Capsicum annuum HOM05D005824 ORTHO05D007029 6.6e-54 216.9 898 26.8
Nn2g14227 Nelumbo nucifera HOM05D005824 ORTHO05D007029 6.6e-54 216.9 888 26.9
AUR62006798 Chenopodium quinoa HOM05D005824 ORTHO05D007029 8.6e-54 216.5 901 26.6
Cfa020078 Carpinus fangiana HOM05D005824 ORTHO05D007029 4.3e-53 214.2 882 26.8
Aqoxy2G02580 Aquilegia oxysepala HOM05D005824 ORTHO05D007029 1.6e-52 212.2 898 26.2
Cpa.g.sc48.209 Carica papaya HOM05D005824 ORTHO05D007029 3.6e-52 211.1 882 26.6
ECA247G2466 Erigeron canadensis HOM05D005824 ORTHO05D007029 6.2e-52 210.3 888 26.1
MSTRG.15631 Avicennia marina HOM05D005824 ORTHO05D007029 8.1e-52 209.9 895 28.5
ClCG07G011770 Citrullus lanatus HOM05D005824 ORTHO05D007029 1.8e-51 208.8 884 24.9
EL10Ac4g09532 Beta vulgaris HOM05D005824 ORTHO05D007029 2.4e-51 208.4 883 26.0
Nitab4.5_0009690g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 3.1e-51 208.0 884 26.9
AT5G26760 Arabidopsis thaliana HOM05D005824 ORTHO05D007029 5.2e-51 207.2 888 27.0
DCAR_005271 Daucus carota HOM05D005824 ORTHO05D007029 5.2e-51 207.2 895 25.5
TAR362G0448 Trochodendron aralioides HOM05D005824 ORTHO05D007029 1.2e-50 206.1 907 26.6
Lj5A322T66 Lonicera japonica HOM05D005824 ORTHO05D007029 2.0e-50 205.3 871 26.5
Oeu061927.1 Olea europaea HOM05D005824 ORTHO05D007029 2.9e-49 201.4 951 24.6
AUR62000450 Chenopodium quinoa HOM05D005824 ORTHO05D007029 3.2e-48 198.0 897 27.0
CsaV3_4G002430 Cucumis sativus L. HOM05D005824 ORTHO05D007029 3.2e-48 198.0 887 24.8
Manes.06G027100 Manihot esculenta HOM05D005824 ORTHO05D007029 3.2e-48 198.0 878 26.4
Phvul.007G265900 Phaseolus vulgaris HOM05D005824 ORTHO05D007029 1.2e-47 196.1 892 26.1
TWI38G0226 Tripterygium wilfordii HOM05D005824 ORTHO05D007029 1.6e-47 195.7 889 26.0
Sed0007659 Sechium edule HOM05D005824 ORTHO05D007029 3.5e-47 194.5 890 25.3
Aa31LG11G9880 Aethionema arabicum HOM05D005824 ORTHO05D007029 4.6e-47 194.1 895 26.5
PSO017G5895 Papaver somniferum HOM05D005824 ORTHO05D007029 7.8e-47 193.4 879 25.7
AagrBONN_evm.TU.Sc2ySwM_117.2728 Anthoceros agrestis HOM05D005824 ORTHO05D007029 1.0e-46 193.0 184 54.3
SGA_v2.0_scaffold33G13450 Striga asiatica HOM05D005824 ORTHO05D007029 1.3e-46 192.6 257 41.2
MELO3C017799.2 Cucumis melo HOM05D005824 ORTHO05D007029 5.1e-46 190.7 885 23.8
CARHR186810 Cardamine hirsuta HOM05D005824 ORTHO05D007029 1.1e-45 189.5 898 25.3
Duzib168G0004 Durio zibethinus HOM05D005824 ORTHO05D007029 2.5e-45 188.3 187 48.7
BraA02t08872Z Brassica rapa HOM05D005824 ORTHO05D007029 5.6e-45 187.2 938 25.7
A02p39030 Brassica napus HOM05D005824 ORTHO05D007029 1.2e-44 186.0 937 25.6
Duzib150G0567 Durio zibethinus HOM05D005824 ORTHO05D007029 1.6e-44 185.7 851 26.4
BolC2t11924H Brassica oleracea HOM05D005824 ORTHO05D007029 2.1e-44 185.3 923 24.9
Prupe.6G306900 Prunus persica HOM05D005824 ORTHO05D007029 3.6e-44 184.5 900 25.1
C02p58640 Brassica napus HOM05D005824 ORTHO05D007029 4.7e-44 184.1 920 24.9
Ciclev10011677m.g Citrus clementina HOM05D005824 ORTHO05D007029 6.2e-44 183.7 184 47.8
COL.COLO4_11087 Corchorus olitorius HOM05D005824 ORTHO05D007029 6.2e-44 183.7 187 47.6
PSO063G2449 Papaver somniferum HOM05D005824 ORTHO05D007029 1.1e-43 183.0 187 47.1
PSO384G0570 Papaver somniferum HOM05D005824 ORTHO05D007029 1.8e-43 182.2 187 47.6
PSO339G3868 Papaver somniferum HOM05D005824 ORTHO05D007029 2.4e-43 181.8 187 46.5
SMO203G0090 Selaginella moellendorffii HOM05D005824 ORTHO05D007029 4.0e-43 181.0 188 50.5
FvH4_6g08180 Fragaria vesca HOM05D005824 ORTHO05D007029 5.2e-43 180.6 921 25.1
FAN14G3202 Fragaria x ananassa HOM05D005824 ORTHO05D007029 1.5e-42 179.1 921 25.0
vmacro01596 Vaccinium macrocarpon HOM05D005824 ORTHO05D007029 2.6e-42 178.3 871 24.5
MD04G1189300 Malus domestica HOM05D005824 ORTHO05D007029 3.4e-42 177.9 897 25.9
MD12G1202100 Malus domestica HOM05D005824 ORTHO05D007029 7.6e-42 176.8 889 26.0
RcHm_v2.0_Chr3g0458051 Rosa chinensis HOM05D005824 ORTHO05D007029 7.6e-42 176.8 917 25.1
ATR0693G066 Amborella trichopoda HOM05D005824 ORTHO05D007029 1.7e-41 175.6 184 44.6
Os05g0134300 Oryza sativa ssp. japonica HOM05D005824 ORTHO05D007029 2.4e-40 171.8 881 25.7
unitig_748.g6998 Utricularia gibba HOM05D005824 ORTHO05D000260 5.4e-40 170.6 885 25.0
Haze_20113 Corylus avellana HOM05D005824 ORTHO05D007029 7.1e-40 170.2 975 23.6
CDE01G0540 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 2.7e-39 168.3 881 24.6
Peaxi162Scf00357g00429 Petunia axillaris HOM05D005824 ORTHO05D007029 3.5e-39 167.9 317 33.8
Nitab4.5_0000185g0360 Nicotiana tabacum HOM05D005824 ORTHO05D007029 7.8e-39 166.8 887 26.7
FAN09G3961 Fragaria x ananassa HOM05D005824 ORTHO05D007029 6.6e-38 163.7 921 24.2
HanXRQChr12g0362901 Helianthus annuus HOM05D005824 ORTHO05D007029 4.0e-35 154.5 180 43.3
CBR_g20185 Chara braunii HOM05D005824 ORTHO05D007029 6.9e-35 153.7 587 27.1
C07p41490 Brassica napus HOM05D005824 ORTHO05D007029 9.9e-34 149.8 193 40.9
Ah.10g027060 Amaranthus hybridus HOM05D005824 ORTHO05D007029 1.3e-33 149.4 912 24.1
BcaNung06222 Brassica carinata HOM05D005824 ORTHO05D007029 8.4e-33 146.7 926 23.5
Lsat_1_v5_gn_9_78801 Lactuca sativa HOM05D005824 ORTHO05D007029 1.1e-32 146.4 163 47.2
FAN05G5613 Fragaria x ananassa HOM05D005824 ORTHO05D007029 1.9e-32 145.6 888 24.2
HPP92_021934 Vanilla planifolia HOM05D005824 ORTHO05D007029 1.2e-31 142.9 174 43.7
BcaNung03676 Brassica carinata HOM05D005824 ORTHO05D007029 2.1e-31 142.1 187 40.1
BolC7t44682H Brassica oleracea HOM05D005824 ORTHO05D007029 2.1e-31 142.1 187 40.1
Nitab4.5_0000185g0370 Nicotiana tabacum HOM05D005824 ORTHO05D007029 4.6e-31 141.0 171 42.1
A06p36990 Brassica napus HOM05D005824 ORTHO05D007029 1.0e-30 139.8 177 42.4
BraA06t26625Z Brassica rapa HOM05D005824 ORTHO05D007029 1.0e-30 139.8 177 42.4
SEGI_20129 Sequoiadendron giganteum HOM05D005824 ORTHO05D007029 8.7e-30 136.7 158 43.7
Hma1.2p1_1243F.1_g269980 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 1.3e-28 132.9 794 24.6
FAN02G4519 Fragaria x ananassa HOM05D005824 ORTHO05D007029 2.1e-28 132.1 895 26.0
Solyc01g101010.4 Solanum lycopersicum HOM05D005824 ORTHO05D007029 8.7e-22 110.2 122 45.1
Zm00001eb354720 Zea mays HOM05D005824 ORTHO05D007029 3.3e-21 108.2 802 22.6
SGA_v2.0_scaffold438G51629 Striga asiatica HOM05D005824 ORTHO05D007029 4.3e-21 107.8 103 50.5
PGR083G1123 Punica granatum HOM05D005824 ORTHO05D007029 6.2e-20 104.0 222 34.7
Gohir.A08G201701 Gossypium hirsutum HOM05D005824 ORTHO05D007029 7.1e-16 90.5 109 44.0
Actinidia35501 Actinidia chinensis HOM05D005824 ORTHO05D007029 7.9e-15 87.0 119 45.4
Nitab4.5_0002783g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 2.3e-14 85.5 86 47.7
Cfa020079 Carpinus fangiana HOM05D005824 ORTHO05D007029 3.9e-14 84.7 82 46.3
HPP92_021933 Vanilla planifolia HOM05D005824 ORTHO05D007029 1.9e-13 82.4 120 39.2
Oeu060660.1 Olea europaea HOM05D005824 ORTHO05D007029 1.3e-12 79.7 94 45.7
Zm00001eb056090 Zea mays HOM05D000739 ORTHO05D007029 2.8e-12 78.6 131 36.6
Zm00001eb289330 Zea mays HOM05D005824 ORTHO05D007029 1.2e-10 73.2 122 36.1
CDE12G0845 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 8.5e-09 67.0 73 41.1


User provided reference genes

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