Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 0.0e+00 1456.8 761 100.0
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 0.0e+00 1094.0 697 81.5
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 7.2e-304 1047.0 752 73.3
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 7.2e-304 1047.0 752 73.3
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 1.8e-278 962.6 701 69.3
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 2.6e-277 958.7 701 68.9
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 3.7e-276 954.9 687 70.3
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 4.9e-276 954.5 693 70.3
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 2.7e-274 948.7 694 68.9
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 1.3e-273 946.4 700 68.3
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 1.7e-273 946.0 693 68.5
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 1.7e-273 946.0 707 68.0
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 3.8e-273 944.9 687 69.1
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 2.5e-272 942.2 708 68.1
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 2.5e-272 942.2 716 67.0
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 3.3e-272 941.8 694 68.7
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 4.3e-272 941.4 694 68.7
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 5.6e-272 941.0 687 68.7
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 7.3e-272 940.6 702 68.4
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 9.5e-272 940.3 695 68.5
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 1.2e-271 939.9 687 69.1
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 1.2e-271 939.9 687 69.1
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 1.2e-271 939.9 687 69.1
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 1.2e-271 939.9 694 68.6
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 2.1e-271 939.1 700 68.1
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 2.8e-271 938.7 695 68.5
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 3.6e-271 938.3 703 68.0
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 3.6e-271 938.3 700 68.0
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 4.7e-271 937.9 674 70.2
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 1.0e-270 936.8 695 68.1
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 1.0e-270 936.8 700 67.7
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 1.4e-270 936.4 707 67.2
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 1.8e-270 936.0 697 68.4
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 1.8e-270 936.0 697 67.9
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 1.8e-270 936.0 695 68.1
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 2.3e-270 935.6 707 66.9
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 4.0e-270 934.9 691 68.3
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 8.9e-270 933.7 697 67.4
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 8.9e-270 933.7 692 68.2
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 1.2e-269 933.3 700 67.7
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 1.5e-269 932.9 700 66.7
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 1.5e-269 932.9 692 68.2
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 2.6e-269 932.2 700 67.7
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 3.4e-269 931.8 700 67.3
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 3.4e-269 931.8 695 68.1
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 1.7e-268 929.5 700 67.7
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 3.7e-268 928.3 693 67.1
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 3.7e-268 928.3 687 68.1
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 3.7e-268 928.3 687 68.4
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 4.9e-268 927.9 700 66.4
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 8.3e-268 927.2 694 67.9
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 3.2e-267 925.2 695 67.5
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 3.2e-267 925.2 692 66.9
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 5.4e-267 924.5 697 66.7
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 9.2e-267 923.7 697 66.3
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 2.0e-266 922.5 692 66.8
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 6.0e-266 921.0 692 66.6
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 6.0e-266 921.0 697 66.1
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 7.8e-266 920.6 692 66.5
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 1.3e-265 919.8 711 67.2
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 1.7e-265 919.5 694 67.1
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 3.0e-265 918.7 716 65.1
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 3.0e-265 918.7 694 66.9
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 3.0e-265 918.7 728 65.2
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 3.9e-265 918.3 692 66.5
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 3.9e-265 918.3 692 66.5
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 5.0e-265 917.9 670 68.2
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 1.5e-264 916.4 692 66.5
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 2.5e-264 915.6 693 66.5
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 4.3e-264 914.8 703 65.1
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 5.6e-264 914.4 688 67.4
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 5.6e-264 914.4 718 65.7
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 1.2e-263 913.3 698 66.8
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 1.2e-263 913.3 688 67.2
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 4.7e-263 911.4 689 67.2
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 8.0e-263 910.6 700 67.7
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 8.0e-263 910.6 700 66.6
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 1.1e-262 910.2 698 66.5
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 4.0e-262 908.3 689 66.9
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 8.9e-262 907.1 714 65.4
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 7.5e-261 904.0 720 64.7
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 2.2e-260 902.5 690 66.8
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 6.4e-260 901.0 697 66.6
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 6.4e-260 901.0 688 66.0
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 6.4e-260 901.0 697 65.4
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 6.4e-260 901.0 697 66.4
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 6.4e-260 901.0 699 65.5
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 5.4e-259 897.9 694 66.4
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 5.4e-259 897.9 778 61.3
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 4.6e-258 894.8 752 62.0
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 2.3e-257 892.5 694 65.4
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 1.5e-256 889.8 715 64.6
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 1.5e-256 889.8 704 64.1
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 2.5e-256 889.0 699 65.2
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 4.7e-255 884.8 699 66.0
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 4.0e-254 881.7 713 64.4
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 8.9e-254 880.6 669 67.4
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 2.6e-253 879.0 751 61.4
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 2.7e-250 869.0 697 63.1
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 3.5e-250 868.6 673 64.8
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 1.0e-249 867.1 739 61.0
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 2.2e-244 849.4 687 62.2
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 1.1e-243 847.0 719 62.0
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 4.0e-238 828.6 594 68.9
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 1.2e-237 827.0 749 56.9
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 2.0e-229 799.7 587 67.3
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 8.4e-228 794.3 634 64.5
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 4.3e-224 781.9 615 63.9
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 6.2e-215 751.5 557 67.7
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 8.2e-215 751.1 569 65.9
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 2.7e-210 736.1 592 63.9
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 7.4e-208 728.0 678 58.3
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 1.7e-204 716.8 686 57.0
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 3.0e-193 679.5 518 65.8
Os10g0488300 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 2.6e-189 666.4 674 50.1
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 1.4e-182 644.0 499 66.1
Zm00001eb045280 Zea mays HOM05D004330 ORTHO05D005182 1.0e-180 637.9 674 48.2
CDE03G0141 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 4.7e-170 602.4 426 68.8
MCO11G104 Micromonas commoda HOM05D004330 ORTHO05D005182 2.7e-157 560.1 753 43.2
Cre08.g367200 Chlamydomonas reinhardtii HOM05D004330 ORTHO05D005182 9.2e-150 535.0 790 39.5
COL.COLO4_33595 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.7e-148 530.8 449 62.8
SEGI_21093 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 7.3e-139 498.8 331 74.3
CBR_g54934 Chara braunii HOM05D004330 ORTHO05D005182 1.4e-129 468.0 387 64.3
PRCOL_00005416 Prasinoderma coloniale HOM05D004330 ORTHO05D005182 3.1e-121 440.3 739 38.4
Migut.C00321 Erythranthe guttata HOM05D004330 ORTHO05D005182 2.8e-106 390.6 280 68.6
CSS0031487 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 1.5e-104 384.8 272 71.0
Haze_02247 Corylus avellana HOM05D004330 ORTHO05D005182 2.1e-98 364.4 269 68.8
COL.COLO4_00397 Corchorus olitorius HOM05D004330 ORTHO05D005182 4.8e-90 336.7 237 70.0
SGA_v2.0_scaffold227G43197 Striga asiatica HOM05D004330 ORTHO05D005182 1.8e-89 334.7 253 66.0
MBI16_g41537_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 4.2e-86 323.6 233 66.5
HPP92_006235 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.7e-82 311.6 259 63.7
CDE03G0281 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 2.0e-75 288.1 249 61.0
HPP92_006237 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.0e-60 239.2 182 62.6
SalBow1G7663 Salvia bowleyana HOM05D001091 ORTHO05D001020 3.1e-57 227.6 215 55.3
CBR_g54936 Chara braunii HOM05D000019 ORTHO05D000353 1.2e-56 225.7 154 66.9
FvH4_6g22200 Fragaria vesca HOM05D004330 ORTHO05D005182 2.7e-56 224.6 192 62.0
MBI13_g40628_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 7.2e-54 216.5 147 67.3
Cfa027264 Carpinus fangiana HOM05D004330 ORTHO05D005182 2.3e-52 211.5 491 29.7
Rhsim02G0174800 Rhododendron simsii HOM05D004330 ORTHO05D005182 1.7e-50 205.3 195 55.4
Oeu028617.1 Olea europaea HOM05D004330 ORTHO05D005182 5.6e-46 190.3 170 57.6
FAN14G0768 Fragaria x ananassa HOM05D004330 ORTHO05D005182 5.2e-44 183.7 192 54.7
Actinidia09912 Actinidia chinensis HOM05D004330 ORTHO05D005182 7.5e-43 179.9 167 57.5
QL09p008022 Quercus lobata HOM05D004330 ORTHO05D005182 1.4e-36 159.1 213 46.0
Hund19535 Selenicereus undatus HOM05D004330 ORTHO05D005182 3.1e-36 157.9 121 67.8
HanXRQChr10g0312231 Helianthus annuus HOM05D004330 ORTHO05D005182 8.9e-36 156.4 104 72.1
QL04p036179 Quercus lobata HOM05D004330 ORTHO05D037441 2.9e-34 151.4 180 50.0
Nitab4.5_0006062g0030 Nicotiana tabacum HOM05D004330 ORTHO05D005182 3.0e-31 141.4 140 57.1
SEGI_19884 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 6.6e-31 140.2 111 66.7
Rhsim02G0174700 Rhododendron simsii HOM05D004330 ORTHO05D005182 5.2e-28 130.6 107 62.6
C06p46260 Brassica napus HOM05D004330 ORTHO05D005182 2.3e-23 115.2 103 53.4
C06p46170 Brassica napus HOM05D004330 ORTHO05D005182 1.2e-21 109.4 103 51.5
C06p46210 Brassica napus HOM05D004330 ORTHO05D005182 1.2e-21 109.4 103 51.5
CARHR152420 Cardamine hirsuta HOM05D004330 ORTHO05D005182 3.4e-19 101.3 149 41.6
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 8.4e-18 96.7 88 52.3
MBI13_g40627_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 2.4e-17 95.1 81 58.0
HPP92_006236 Vanilla planifolia HOM05D004330 ORTHO05D005182 9.2e-17 93.2 57 71.9
EL10Ac2g03252 Beta vulgaris HOM05D004330 ORTHO05D005182 1.2e-16 92.8 66 62.1
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 7.8e-16 90.1 77 55.8
Zm00001eb378040 Zea mays HOM05D004330 ORTHO05D000629 3.9e-15 87.8 59 66.1
HPP92_006372 Vanilla planifolia HOM05D004330 ORTHO05D005182 8.9e-12 76.6 78 52.6
EL10Ac2g03375 Beta vulgaris HOM05D015602 ORTHO05D006373 2.6e-11 75.1 67 58.2
CARHR064590 Cardamine hirsuta HOM05D004330 ORTHO05D005182 4.9e-10 70.9 113 41.6
Haze_14000 Corylus avellana HOM05D004330 ORTHO05D005182 4.6e-08 64.3 73 50.7
COL.COLO4_23503 Corchorus olitorius HOM05D004330 ORTHO05D005182 3.0e-07 61.6 75 48.0
SGA_v2.0_scaffold123G33447 Striga asiatica HOM05D004330 ORTHO05D005182 2.5e-06 58.5 43 58.1


User provided reference genes

Program Settings