Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c4_14090 Physcomitrium patens HOM05D006560 ORTHO05D008164 0.0e+00 1232.6 648 100.0
SEGI_37812 Sequoiadendron giganteum HOM05D006560 ORTHO05D008164 1.1e-58 232.3 611 30.6
SMO169G0207 Selaginella moellendorffii HOM05D006560 ORTHO05D008164 6.6e-40 169.9 346 32.9
PSO063G7212 Papaver somniferum HOM05D006560 ORTHO05D008164 8.6e-40 169.5 610 27.4
Aqoxy3G04298 Aquilegia oxysepala HOM05D006560 ORTHO05D008164 3.3e-39 167.5 335 34.6
ATR0618G008 Amborella trichopoda HOM05D006560 ORTHO05D008164 4.7e-38 163.7 331 35.6
PSO782G5584 Papaver somniferum HOM05D006560 ORTHO05D008164 6.2e-38 163.3 610 27.2
CAN.G809.82 Capsicum annuum HOM05D006560 ORTHO05D008164 8.9e-37 159.5 627 25.4
SalBow5G2177 Salvia bowleyana HOM05D006560 ORTHO05D008164 8.9e-37 159.5 597 24.8
MSTRG.3663 Avicennia marina HOM05D006560 ORTHO05D008164 1.5e-36 158.7 632 26.3
Os10g0487300 Oryza sativa ssp. japonica HOM05D006560 ORTHO05D008164 3.4e-36 157.5 638 25.1
Nitab4.5_0000108g0060 Nicotiana tabacum HOM05D006560 ORTHO05D008164 9.9e-36 156.0 607 26.2
Nitab4.5_0003580g0010 Nicotiana tabacum HOM05D006560 ORTHO05D008164 1.7e-35 155.2 341 30.2
Cc07_g12560 Coffea canephora HOM05D006560 ORTHO05D008164 3.8e-35 154.1 381 29.7
Glyma.14G208100 Glycine max HOM05D006560 ORTHO05D008164 4.9e-35 153.7 632 25.9
TAR629G1839 Trochodendron aralioides HOM05D006560 ORTHO05D008164 1.1e-34 152.5 365 31.0
GSVIVG01033201001 Vitis vinifera HOM05D006560 ORTHO05D008164 1.4e-34 152.1 365 31.0
Zm00001eb221260 Zea mays HOM05D006560 ORTHO05D008164 5.4e-34 150.2 639 24.9
Manes.01G126500 Manihot esculenta HOM05D006560 ORTHO05D008164 9.2e-34 149.4 397 30.5
SGA_v2.0_scaffold45G17096 Striga asiatica HOM05D006560 ORTHO05D008164 9.2e-34 149.4 629 24.2
Thhalv10020468m.g Eutrema salsugineum HOM05D006560 ORTHO05D008164 1.2e-33 149.1 345 30.7
Phvul.008G242800 Phaseolus vulgaris HOM05D006560 ORTHO05D008164 2.1e-33 148.3 640 25.3
MBI03_g13822_MAGBIO Magnolia biondii HOM05D006560 ORTHO05D008164 4.6e-33 147.1 292 32.2
Sp3g01710 Schrenkiella parvula HOM05D006560 ORTHO05D008164 7.8e-33 146.4 639 26.3
PGSC0003DMG400017739 Solanum tuberosum HOM05D006560 ORTHO05D008164 7.8e-33 146.4 622 25.2
HPP92_015158 Vanilla planifolia HOM05D006560 ORTHO05D008164 1.0e-32 146.0 336 32.7
Ah.14g086100 Amaranthus hybridus HOM05D006560 ORTHO05D008164 3.0e-32 144.4 618 25.7
VMungo0647G2139 Vigna mungo HOM05D006560 ORTHO05D008164 3.0e-32 144.4 644 25.0
Carub.0003s0178 Capsella rubella HOM05D006560 ORTHO05D008164 3.9e-32 144.1 344 31.7
CARHR076680 Cardamine hirsuta HOM05D006560 ORTHO05D008164 3.9e-32 144.1 354 31.1
MD09G1187400 Malus domestica HOM05D006560 ORTHO05D008164 3.9e-32 144.1 355 30.7
Actinidia22879 Actinidia chinensis HOM05D006560 ORTHO05D008164 6.6e-32 143.3 370 29.7
C09p75830 Brassica napus HOM05D006560 ORTHO05D008164 6.6e-32 143.3 346 31.5
BolC5t35073H Brassica oleracea HOM05D006560 ORTHO05D008164 6.6e-32 143.3 346 31.5
HanXRQChr16g0532681 Helianthus annuus HOM05D006560 ORTHO05D008164 6.6e-32 143.3 354 28.5
QL02p055474 Quercus lobata HOM05D006560 ORTHO05D008164 6.6e-32 143.3 368 29.3
vmacro20436 Vaccinium macrocarpon HOM05D006560 ORTHO05D008164 6.6e-32 143.3 462 26.2
Solyc02g081520.3 Solanum lycopersicum HOM05D006560 ORTHO05D008164 8.7e-32 142.9 639 26.0
BcaC05g30516 Brassica carinata HOM05D006560 ORTHO05D008164 1.1e-31 142.5 348 31.9
CiPaw.04G006800 Carya illinoinensis HOM05D006560 ORTHO05D008164 1.1e-31 142.5 372 30.4
DCAR_014134 Daucus carota HOM05D006560 ORTHO05D008164 7.3e-31 139.8 620 24.7
A05p44410 Brassica napus HOM05D006560 ORTHO05D008164 9.6e-31 139.4 449 29.2
CANSAT64G2566 Cannabis sativa HOM05D006560 ORTHO05D008164 9.6e-31 139.4 616 25.2
Lalb_Chr17g0345771 Lupinus albus HOM05D006560 ORTHO05D008164 1.6e-30 138.7 602 25.7
Aa31LG5G13150 Aethionema arabicum HOM05D006560 ORTHO05D008164 2.8e-30 137.9 404 29.0
arahy.Tifrunner.gnm1.ann1.RNL3QM Arachis hypogaea HOM05D006560 ORTHO05D008164 2.8e-30 137.9 606 25.9
Prupe.8G267600 Prunus persica HOM05D006560 ORTHO05D008164 2.8e-30 137.9 339 31.0
BcaC05g30567 Brassica carinata HOM05D006560 ORTHO05D008164 3.6e-30 137.5 345 31.6
Psat2g048560 Pisum sativum HOM05D006560 ORTHO05D008164 4.7e-30 137.1 612 24.5
PGR102G0946 Punica granatum HOM05D006560 ORTHO05D008164 4.7e-30 137.1 355 30.4
AL3G12070 Arabidopsis lyrata HOM05D006560 ORTHO05D008164 6.2e-30 136.7 365 31.0
Eucgr.B03794 Eucalyptus grandis HOM05D006560 ORTHO05D008164 6.2e-30 136.7 608 25.7
RcHm_v2.0_Chr7g0242051 Rosa chinensis HOM05D006560 ORTHO05D008164 6.2e-30 136.7 327 30.6
BraA06t23296Z Brassica rapa HOM05D006560 ORTHO05D008164 1.1e-29 136.0 345 30.1
Cfa008016 Carpinus fangiana HOM05D006560 ORTHO05D008164 1.8e-29 135.2 327 29.7
Gorai.008G054800 Gossypium raimondii HOM05D006560 ORTHO05D008164 1.8e-29 135.2 375 28.3
Atru.chr1.2184 Acer truncatum HOM05D006560 ORTHO05D008164 2.4e-29 134.8 403 28.0
LjContig00141g0007295 Lotus japonicus HOM05D006560 ORTHO05D008164 3.1e-29 134.4 642 24.9
EL10Ac6g14054 Beta vulgaris HOM05D006560 ORTHO05D008164 4.0e-29 134.0 611 23.9
Hund12951 Selenicereus undatus HOM05D006560 ORTHO05D008164 5.3e-29 133.7 624 24.8
Gohir.D12G051500 Gossypium hirsutum HOM05D006560 ORTHO05D008164 6.9e-29 133.3 377 28.1
arahy.Tifrunner.gnm1.ann1.N6ISZX Arachis hypogaea HOM05D006560 ORTHO05D008164 9.0e-29 132.9 606 25.6
Glyma.02G239200 Glycine max HOM05D006560 ORTHO05D008164 9.0e-29 132.9 337 28.5
ECA246G0244 Erigeron canadensis HOM05D006560 ORTHO05D008164 1.2e-28 132.5 363 29.2
FvH4_5g39750 Fragaria vesca HOM05D006560 ORTHO05D008164 1.2e-28 132.5 325 29.2
AT3G02680 Arabidopsis thaliana HOM05D006560 ORTHO05D008164 1.5e-28 132.1 346 30.3
Gohir.A12G053000 Gossypium hirsutum HOM05D006560 ORTHO05D008164 1.5e-28 132.1 378 27.8
Duzib138G1900 Durio zibethinus HOM05D006560 ORTHO05D008164 4.4e-28 130.6 340 29.7
Dinv28275 Davidia involucrata HOM05D006560 ORTHO05D008164 5.8e-28 130.2 269 33.5
Migut.K01188 Erythranthe guttata HOM05D006560 ORTHO05D008164 5.8e-28 130.2 636 24.2
Haze_14043 Corylus avellana HOM05D006560 ORTHO05D008164 7.6e-28 129.8 336 28.6
MELO3C020249.2 Cucumis melo HOM05D006560 ORTHO05D008164 7.6e-28 129.8 359 29.2
Potri.015G148300 Populus trichocarpa HOM05D006560 ORTHO05D008164 7.6e-28 129.8 358 30.4
TWI77G0885 Tripterygium wilfordii HOM05D006560 ORTHO05D008164 7.6e-28 129.8 360 28.9
Lj4A249G52 Lonicera japonica HOM05D006560 ORTHO05D008164 9.9e-28 129.4 301 31.9
AUR62014236 Chenopodium quinoa HOM05D006560 ORTHO05D008164 1.7e-27 128.6 614 25.7
Sabra16G0321300 Salix brachista HOM05D006560 ORTHO05D008164 2.9e-27 127.9 336 31.2
CsaV3_3G021130 Cucumis sativus L. HOM05D006560 ORTHO05D008164 3.8e-27 127.5 359 28.4
COL.COLO4_13435 Corchorus olitorius HOM05D006560 ORTHO05D008164 4.9e-27 127.1 652 24.8
TPR.G15397 Trifolium pratense HOM05D006560 ORTHO05D008164 1.1e-26 125.9 611 24.4
Hma1.2p1_0085F.1_g043920 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 1.9e-26 125.2 437 26.5
Thecc.04G055900 Theobroma cacao HOM05D006560 ORTHO05D008164 7.1e-26 123.2 458 27.5
ClCG05G011330 Citrullus lanatus HOM05D006560 ORTHO05D008164 1.6e-25 122.1 373 27.9
Medtr5g076180 Medicago truncatula HOM05D006560 ORTHO05D008164 2.7e-25 121.3 647 25.2
Ca_05740_v3 Cicer arietinum L. HOM05D006560 ORTHO05D008164 7.8e-25 119.8 336 27.7
Lsat_1_v5_gn_3_69681 Lactuca sativa HOM05D006560 ORTHO05D008164 3.0e-24 117.9 355 28.2
Sc09g0004640 Simmondsia chinensis HOM05D006560 ORTHO05D008164 9.6e-23 112.8 573 24.6
AUR62038458 Chenopodium quinoa HOM05D006560 ORTHO05D008164 1.3e-22 112.5 336 28.0
SHI09016 Sapria himalayana HOM05D006560 ORTHO05D008164 1.4e-21 109.0 357 26.6
Sed0010007 Sechium edule HOM05D006560 ORTHO05D008164 1.5e-20 105.5 359 27.3
Nn3g18627 Nelumbo nucifera HOM05D006560 ORTHO05D008164 4.9e-19 100.5 162 35.8
QL02p056517 Quercus lobata HOM05D006560 ORTHO05D008164 1.4e-18 99.0 192 31.8
Ciclev10012792m.g Citrus clementina HOM05D006560 ORTHO05D008164 1.9e-18 98.6 209 29.2
CDE04G3361 Ceratophyllum demersum HOM05D006560 ORTHO05D008164 5.4e-18 97.1 272 32.7
Sabra16G0322200 Salix brachista HOM05D006560 ORTHO05D008164 7.1e-18 96.7 438 25.8
Peaxi162Scf00344g01815 Petunia axillaris HOM05D006560 ORTHO05D008164 1.2e-17 95.9 169 30.8
Sabra15G0156900 Salix brachista HOM05D006560 ORTHO05D008164 3.5e-17 94.4 446 24.7
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 1.1e-15 89.4 632 21.5
CBR_g29321 Chara braunii HOM05D006560 ORTHO05D008164 4.3e-15 87.4 180 30.6
Cpa.g.sc108.22 Carica papaya HOM05D006560 ORTHO05D008164 2.1e-14 85.1 239 28.5
Migut.L00936 Erythranthe guttata HOM05D006560 ORTHO05D008164 4.0e-13 80.9 194 27.3
Oeu060825.3 Olea europaea HOM05D006560 ORTHO05D008164 6.9e-13 80.1 209 28.7
CSS0021055 Camellia sinensis var. sinensis HOM05D000185 ORTHO05D000105 1.5e-12 79.0 188 27.7
Hma1.2p1_0085F.1_g043925 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 1.9e-10 72.0 130 32.3
Hma1.2p1_0085F.1_g043960 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 1.9e-10 72.0 130 32.3
FAN08G2099 Fragaria x ananassa HOM05D006560 ORTHO05D008164 3.5e-09 67.8 98 34.7
TPR.G36125 Trifolium pratense HOM05D006560 ORTHO05D008164 1.0e-08 66.2 98 34.7
Hma1.2p1_0085F.1_g043970 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 1.3e-08 65.9 282 25.2
Migut.L00937 Erythranthe guttata HOM05D006560 ORTHO05D008164 4.3e-07 60.8 124 32.3


User provided reference genes

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