Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_4670 Physcomitrium patens HOM05D003678 ORTHO05D004340 1.5e-218 762.7 417 100.0
Mapoly0085s0044 Marchantia polymorpha HOM05D003678 ORTHO05D004340 6.4e-105 385.2 431 51.3
Pp3c14_26000 Physcomitrium patens HOM05D003678 ORTHO05D004340 1.2e-103 380.9 238 78.2
TAR626G0756 Trochodendron aralioides HOM05D003678 ORTHO05D004340 2.8e-92 343.2 418 45.0
TAR626G0897 Trochodendron aralioides HOM05D003678 ORTHO05D004340 4.8e-92 342.4 418 44.7
Hma1.2p1_0379F.1_g139790 Hydrangea macrophylla HOM05D003678 ORTHO05D004340 1.8e-91 340.5 418 45.2
Hma1.2p1_0891F.1_g233175 Hydrangea macrophylla HOM05D003678 ORTHO05D004340 1.8e-91 340.5 418 45.2
MBI16_g31785_MAGBIO Magnolia biondii HOM05D003678 ORTHO05D004340 2.0e-90 337.0 418 45.0
SEGI_16726 Sequoiadendron giganteum HOM05D003678 ORTHO05D004340 5.9e-90 335.5 420 44.5
Eucgr.C04005 Eucalyptus grandis HOM05D003678 ORTHO05D004340 3.8e-89 332.8 421 44.4
DCAR_000669 Daucus carota HOM05D003678 ORTHO05D004340 6.5e-89 332.0 432 43.5
SMO143G0266 Selaginella moellendorffii HOM05D003678 ORTHO05D004340 6.5e-89 332.0 433 45.7
ATR0580G292 Amborella trichopoda HOM05D003678 ORTHO05D004340 1.4e-88 330.9 419 46.3
Dinv18146 Davidia involucrata HOM05D003678 ORTHO05D004340 1.4e-88 330.9 418 43.1
Lalb_Chr14g0362261 Lupinus albus HOM05D003678 ORTHO05D004340 1.4e-88 330.9 420 45.2
Haze_21723 Corylus avellana HOM05D003678 ORTHO05D004340 2.5e-88 330.1 420 43.8
Cfa013262 Carpinus fangiana HOM05D003678 ORTHO05D004340 4.2e-88 329.3 429 42.7
QL12p024946 Quercus lobata HOM05D003678 ORTHO05D004340 4.2e-88 329.3 419 45.1
Hund03284 Selenicereus undatus HOM05D003678 ORTHO05D004340 4.2e-88 329.3 418 45.9
MSTRG.25776 Avicennia marina HOM05D003678 ORTHO05D004340 7.2e-88 328.6 429 42.9
Manes.03G003200 Manihot esculenta HOM05D003678 ORTHO05D004340 1.6e-87 327.4 419 43.2
Potri.006G275300 Populus trichocarpa HOM05D003678 ORTHO05D004340 2.7e-87 326.6 418 44.0
AUR62009050 Chenopodium quinoa HOM05D003678 ORTHO05D004340 4.6e-87 325.9 418 43.8
TAR383G0188 Trochodendron aralioides HOM05D003678 ORTHO05D004340 4.6e-87 325.9 416 43.8
Dinv03491 Davidia involucrata HOM05D003678 ORTHO05D004340 6.1e-87 325.5 418 42.6
AagrBONN_evm.TU.Sc2ySwM_228.5550 Anthoceros agrestis HOM05D003678 ORTHO05D004340 7.9e-87 325.1 422 46.9
Lsat_1_v5_gn_6_15381 Lactuca sativa HOM05D003678 ORTHO05D004340 7.9e-87 325.1 419 44.9
Sopen12g032280 Solanum pennellii HOM05D003678 ORTHO05D004340 7.9e-87 325.1 424 43.6
Ah.06g192800 Amaranthus hybridus HOM05D003678 ORTHO05D004340 1.0e-86 324.7 418 44.5
Sabra06G0213100 Salix brachista HOM05D003678 ORTHO05D004340 1.0e-86 324.7 418 42.8
CSS0027905 Camellia sinensis var. sinensis HOM05D003678 ORTHO05D004340 1.3e-86 324.3 420 43.8
PSO170G4284 Papaver somniferum HOM05D003678 ORTHO05D004340 1.8e-86 323.9 422 43.4
arahy.Tifrunner.gnm1.ann1.P9WJGS Arachis hypogaea HOM05D003678 ORTHO05D004340 2.3e-86 323.6 420 46.0
HanXRQChr16g0513211 Helianthus annuus HOM05D003678 ORTHO05D004340 2.3e-86 323.6 422 45.5
FvH4_2g36910 Fragaria vesca HOM05D003678 ORTHO05D004340 3.0e-86 323.2 418 44.0
RcHm_v2.0_Chr6g0304871 Rosa chinensis HOM05D003678 ORTHO05D004340 3.0e-86 323.2 418 44.3
CAN.G566.61 Capsicum annuum HOM05D003678 ORTHO05D004340 3.9e-86 322.8 425 42.8
CiPaw.08G019100 Carya illinoinensis HOM05D003678 ORTHO05D004340 3.9e-86 322.8 419 43.7
AUR62020613 Chenopodium quinoa HOM05D003678 ORTHO05D004340 3.9e-86 322.8 418 43.5
Solyc12g096450.2 Solanum lycopersicum HOM05D003678 ORTHO05D004340 3.9e-86 322.8 424 43.4
TAR383G0531 Trochodendron aralioides HOM05D003678 ORTHO05D004340 3.9e-86 322.8 416 43.3
Peaxi162Scf00459g00837 Petunia axillaris HOM05D003678 ORTHO05D004340 6.7e-86 322.0 416 43.8
Thecc.09G006300 Theobroma cacao HOM05D003678 ORTHO05D004340 6.7e-86 322.0 420 43.6
FAN20G0096 Fragaria x ananassa HOM05D003678 ORTHO05D004340 1.1e-85 321.2 423 43.5
Carub.0007s0914 Capsella rubella HOM05D003678 ORTHO05D004340 1.5e-85 320.9 426 43.2
FAN27G1333 Fragaria x ananassa HOM05D003678 ORTHO05D004340 1.5e-85 320.9 424 45.3
BcaC09g51921 Brassica carinata HOM05D003678 ORTHO05D004340 1.9e-85 320.5 424 42.7
C01p07630 Brassica napus HOM05D003678 ORTHO05D004340 1.9e-85 320.5 424 42.7
arahy.Tifrunner.gnm1.ann1.DFD6U9 Arachis hypogaea HOM05D003678 ORTHO05D004340 2.5e-85 320.1 420 45.5
Ca_12869_v3 Cicer arietinum L. HOM05D003678 ORTHO05D004340 2.5e-85 320.1 418 42.8
FAN15G2333 Fragaria x ananassa HOM05D003678 ORTHO05D004340 2.5e-85 320.1 435 44.8
MD15G1108800 Malus domestica HOM05D003678 ORTHO05D004340 2.5e-85 320.1 420 43.1
vmacro05102 Vaccinium macrocarpon HOM05D003678 ORTHO05D004340 2.5e-85 320.1 418 42.8
AL7G20640 Arabidopsis lyrata HOM05D003678 ORTHO05D004340 3.3e-85 319.7 428 42.3
PSO063G6534 Papaver somniferum HOM05D003678 ORTHO05D004340 3.3e-85 319.7 418 49.8
SalBow4G1160 Salvia bowleyana HOM05D003678 ORTHO05D004340 3.3e-85 319.7 418 43.5
Lj5g0015114 Lotus japonicus HOM05D003678 ORTHO05D004340 4.3e-85 319.3 418 45.7
Prupe.1G461000 Prunus persica HOM05D003678 ORTHO05D004340 4.3e-85 319.3 424 42.7
PGSC0003DMG400029367 Solanum tuberosum HOM05D003678 ORTHO05D004340 7.4e-85 318.5 422 42.9
ECA233G4849 Erigeron canadensis HOM05D003678 ORTHO05D004340 9.7e-85 318.2 418 45.5
Nitab4.5_0005481g0010 Nicotiana tabacum HOM05D003678 ORTHO05D004340 9.7e-85 318.2 424 43.2
Oeu040383.1 Olea europaea HOM05D003678 ORTHO05D004340 1.6e-84 317.4 420 43.3
A01p06860 Brassica napus HOM05D003678 ORTHO05D004340 3.7e-84 316.2 426 42.3
CDE02G2639 Ceratophyllum demersum HOM05D003678 ORTHO05D004340 3.7e-84 316.2 418 43.1
Sp7g29280 Schrenkiella parvula HOM05D003678 ORTHO05D004340 3.7e-84 316.2 421 42.5
BolC1t00743H Brassica oleracea HOM05D003678 ORTHO05D004340 4.8e-84 315.8 425 42.6
Potri.018G006300 Populus trichocarpa HOM05D003678 ORTHO05D004340 6.3e-84 315.5 418 43.5
Duzib168G2376 Durio zibethinus HOM05D003678 ORTHO05D004340 8.2e-84 315.1 429 41.5
Medtr1g009770 Medicago truncatula HOM05D003678 ORTHO05D004340 8.2e-84 315.1 429 42.7
SGA_v2.0_scaffold193G40661 Striga asiatica HOM05D003678 ORTHO05D004340 1.1e-83 314.7 451 42.4
TWI63G1033 Tripterygium wilfordii HOM05D003678 ORTHO05D004340 1.1e-83 314.7 418 41.9
HPP92_010767 Vanilla planifolia HOM05D003678 ORTHO05D004340 1.1e-83 314.7 421 43.9
Gorai.009G068400 Gossypium raimondii HOM05D003678 ORTHO05D004340 1.8e-83 313.9 418 43.3
unitig_32.g11644 Utricularia gibba HOM05D003678 ORTHO05D004340 1.8e-83 313.9 421 45.1
CBR_g30359 Chara braunii HOM05D003678 ORTHO05D004340 2.4e-83 313.5 464 43.1
Glyma.17G189600 Glycine max HOM05D003678 ORTHO05D004340 2.4e-83 313.5 421 42.8
Nitab4.5_0001110g0180 Nicotiana tabacum HOM05D003678 ORTHO05D004340 3.1e-83 313.2 426 42.3
Aa31LG2G18930 Aethionema arabicum HOM05D003678 ORTHO05D004340 4.1e-83 312.8 417 41.0
GSVIVG01035534001 Vitis vinifera HOM05D003678 ORTHO05D004340 4.1e-83 312.8 418 47.1
CANSAT11G2609 Cannabis sativa HOM05D003678 ORTHO05D004340 5.3e-83 312.4 422 45.0
CARHR239300 Cardamine hirsuta HOM05D003678 ORTHO05D004340 5.3e-83 312.4 425 44.5
Gohir.D05G067600 Gossypium hirsutum HOM05D003678 ORTHO05D004340 5.3e-83 312.4 430 45.1
BcaNung04590 Brassica carinata HOM05D003678 ORTHO05D004340 6.9e-83 312.0 424 42.5
Glyma.11G172610 Glycine max HOM05D003678 ORTHO05D004340 1.2e-82 311.2 421 42.3
Phvul.001G058800 Phaseolus vulgaris HOM05D003678 ORTHO05D004340 1.2e-82 311.2 418 46.2
VMungo0647G0546 Vigna mungo HOM05D003678 ORTHO05D004340 1.2e-82 311.2 420 45.0
Zm00001eb226230 Zea mays HOM05D003678 ORTHO05D004340 1.2e-82 311.2 421 41.6
Gohir.A05G065000 Gossypium hirsutum HOM05D003678 ORTHO05D004340 1.5e-82 310.8 418 42.8
BraA01t00637Z Brassica rapa HOM05D003678 ORTHO05D004340 2.0e-82 310.5 427 42.2
Glyma.17G200200 Glycine max HOM05D003678 ORTHO05D004340 2.0e-82 310.5 421 42.3
Lalb_Chr24g0402471 Lupinus albus HOM05D003678 ORTHO05D004340 2.6e-82 310.1 420 41.9
Migut.A00439 Erythranthe guttata HOM05D003678 ORTHO05D004340 5.9e-82 308.9 429 44.5
TPR.G12018 Trifolium pratense HOM05D003678 ORTHO05D004340 5.9e-82 308.9 448 48.4
Glyma.11G172819 Glycine max HOM05D003678 ORTHO05D004340 7.7e-82 308.5 421 42.3
Gohir.D07G001800 Gossypium hirsutum HOM05D003678 ORTHO05D004340 7.7e-82 308.5 418 42.3
Aqoxy7G03011 Aquilegia oxysepala HOM05D003678 ORTHO05D004340 1.0e-81 308.1 413 42.9
Cc08_g06430 Coffea canephora HOM05D003678 ORTHO05D004340 1.3e-81 307.8 419 41.8
Gorai.001G001500 Gossypium raimondii HOM05D003678 ORTHO05D004340 1.3e-81 307.8 418 42.1
Atru.chr7.2631 Acer truncatum HOM05D003678 ORTHO05D004340 1.7e-81 307.4 415 42.2
AT4G31420 Arabidopsis thaliana HOM05D003678 ORTHO05D004340 1.7e-81 307.4 423 48.9
Psat6g032480 Pisum sativum HOM05D003678 ORTHO05D004340 2.2e-81 307.0 421 46.1
BcaC02g08448 Brassica carinata HOM05D003678 ORTHO05D004340 2.9e-81 306.6 419 48.9
BolC4t26963H Brassica oleracea HOM05D003678 ORTHO05D004340 2.9e-81 306.6 419 48.9
Thhalv10025366m.g Eutrema salsugineum HOM05D003678 ORTHO05D004340 2.9e-81 306.6 424 40.8
Gohir.A07G001400 Gossypium hirsutum HOM05D003678 ORTHO05D004340 2.9e-81 306.6 418 42.1
CANSAT25G1292 Cannabis sativa HOM05D003678 ORTHO05D004340 3.8e-81 306.2 421 42.8
C04p54110 Brassica napus HOM05D003678 ORTHO05D004340 5.0e-81 305.8 419 49.4
HanXRQChr12g0384061 Helianthus annuus HOM05D003678 ORTHO05D004340 5.0e-81 305.8 419 41.3
Os06g0693500 Oryza sativa ssp. japonica HOM05D003678 ORTHO05D004340 5.0e-81 305.8 418 44.0
Rhsim07G0170500 Rhododendron simsii HOM05D003678 ORTHO05D004340 6.5e-81 305.4 418 42.3
A04p18800 Brassica napus HOM05D003678 ORTHO05D004340 8.5e-81 305.1 418 49.3
Thhalv10000189m.g Eutrema salsugineum HOM05D003678 ORTHO05D004340 8.5e-81 305.1 418 44.5
BcaB06g27975 Brassica carinata HOM05D003678 ORTHO05D004340 1.1e-80 304.7 418 45.7
PGR044G2213 Punica granatum HOM05D003678 ORTHO05D004340 2.5e-80 303.5 430 41.4
BraA04t17489Z Brassica rapa HOM05D003678 ORTHO05D004340 3.2e-80 303.1 418 51.2
AT2G24500 Arabidopsis thaliana HOM05D003678 ORTHO05D004340 7.2e-80 302.0 431 41.3
EL10Ac2g03738 Beta vulgaris HOM05D003678 ORTHO05D004340 2.1e-79 300.4 481 38.3
Ciclev10008476m.g Citrus clementina HOM05D003678 ORTHO05D004340 4.6e-79 299.3 421 40.9
Sed0010708 Sechium edule HOM05D003678 ORTHO05D004340 4.6e-79 299.3 421 48.7
AL4G14980 Arabidopsis lyrata HOM05D003678 ORTHO05D004340 7.9e-79 298.5 421 45.6
HanXRQChr16g0504351 Helianthus annuus HOM05D003678 ORTHO05D004340 7.9e-79 298.5 371 46.6
THA.LOC104803597 Tarenaya hassleriana HOM05D003678 ORTHO05D004340 7.9e-79 298.5 419 47.5
Aa31LG7G11470 Aethionema arabicum HOM05D003678 ORTHO05D004340 1.4e-78 297.7 420 40.7
Carub.0004s0384 Capsella rubella HOM05D003678 ORTHO05D004340 1.8e-78 297.4 425 41.2
BraA09t41018Z Brassica rapa HOM05D003678 ORTHO05D004340 2.3e-78 297.0 418 45.2
Sp4g03510 Schrenkiella parvula HOM05D003678 ORTHO05D004340 3.9e-78 296.2 419 43.7
MELO3C003636.2 Cucumis melo HOM05D003678 ORTHO05D004340 8.8e-78 295.0 420 47.9
CsaV3_3G047000 Cucumis sativus L. HOM05D003678 ORTHO05D004340 8.8e-78 295.0 419 47.5
Cpa.g.sc23.4 Carica papaya HOM05D003678 ORTHO05D004340 1.5e-77 294.3 430 40.9
CARHR117530 Cardamine hirsuta HOM05D003678 ORTHO05D004340 7.4e-77 292.0 418 47.6
Sed0004467 Sechium edule HOM05D003678 ORTHO05D004340 7.4e-77 292.0 421 40.6
Nitab4.5_0000555g0240 Nicotiana tabacum HOM05D003678 ORTHO05D004340 9.7e-77 291.6 424 42.5
Peaxi162Scf00045g01736 Petunia axillaris HOM05D003678 ORTHO05D004340 1.7e-76 290.8 420 41.7
Actinidia03577 Actinidia chinensis HOM05D003678 ORTHO05D004340 3.7e-76 289.7 418 41.4
Cc08_g06510 Coffea canephora HOM05D003678 ORTHO05D004340 1.8e-75 287.3 376 41.8
CiPaw.07G213700 Carya illinoinensis HOM05D003678 ORTHO05D004340 9.1e-75 285.0 378 40.5
CAN.G673.15 Capsicum annuum HOM05D003678 ORTHO05D004340 2.0e-74 283.9 368 42.1
Lsat_1_v5_gn_3_27981 Lactuca sativa HOM05D003678 ORTHO05D004340 1.3e-73 281.2 434 41.0
A09p56240 Brassica napus HOM05D003678 ORTHO05D004340 2.2e-73 280.4 467 36.8
PGSC0003DMG401026315 Solanum tuberosum HOM05D003678 ORTHO05D004340 8.5e-73 278.5 363 41.6
Nn8g40427 Nelumbo nucifera HOM05D003678 ORTHO05D004340 2.6e-69 266.9 330 43.9
Sopen08g002420 Solanum pennellii HOM05D003678 ORTHO05D004340 2.6e-69 266.9 359 40.9
COL.COLO4_19043 Corchorus olitorius HOM05D003678 ORTHO05D004340 2.2e-68 263.8 384 40.6
Solyc08g006470.4 Solanum lycopersicum HOM05D003678 ORTHO05D004340 2.4e-67 260.4 347 42.1
ClCG05G017500 Citrullus lanatus HOM05D003678 ORTHO05D004340 2.6e-66 256.9 350 44.9
Manes.16G136200 Manihot esculenta HOM05D003678 ORTHO05D004340 8.5e-65 251.9 435 37.0
BcaC07g40924 Brassica carinata HOM05D003678 ORTHO05D004340 1.3e-60 238.0 413 39.5
MD08G1131000 Malus domestica HOM05D003678 ORTHO05D004340 2.2e-60 237.3 295 43.4
Sc09g0008090 Simmondsia chinensis HOM05D003678 ORTHO05D004340 3.7e-60 236.5 293 43.7
Lj7A752T54 Lonicera japonica HOM05D003678 ORTHO05D004340 1.1e-59 235.0 416 39.9
BolC8t51492H Brassica oleracea HOM05D003678 ORTHO05D004340 2.4e-59 233.8 447 35.1
C08p39190 Brassica napus HOM05D003678 ORTHO05D004340 6.1e-55 219.2 343 37.6
Oeu018570.1 Olea europaea HOM05D003678 ORTHO05D004340 2.0e-53 214.2 325 37.2
Medtr1g047010 Medicago truncatula HOM05D003678 ORTHO05D004340 4.2e-48 196.4 377 34.5
CDE05G3053 Ceratophyllum demersum HOM05D003678 ORTHO05D004340 1.0e-46 191.8 269 39.8
CDE05G1087 Ceratophyllum demersum HOM05D003678 ORTHO05D004340 6.3e-44 182.6 382 31.7
ECA246G1371 Erigeron canadensis HOM05D000763 ORTHO05D004340 4.5e-42 176.4 318 36.5
Nitab4.5_0004131g0030 Nicotiana tabacum HOM05D003678 ORTHO05D004340 4.5e-42 176.4 407 34.2
TAR383G1077 Trochodendron aralioides HOM05D003678 ORTHO05D004340 1.1e-40 171.8 392 33.2
BcaC07g37410 Brassica carinata HOM05D003678 ORTHO05D004340 3.0e-38 163.7 260 38.1
Cre17.g716400 Chlamydomonas reinhardtii HOM05D003678 ORTHO05D004340 7.8e-34 149.1 485 34.6
PRCOL_00002050 Prasinoderma coloniale HOM05D003678 ORTHO05D004340 9.8e-29 132.1 436 30.7
Cfa025296 Carpinus fangiana HOM05D003678 ORTHO05D004340 6.0e-26 122.9 296 26.7
BolC8t47735H Brassica oleracea HOM05D003678 ORTHO05D004340 5.4e-19 99.8 239 32.2
CAN.G4.3 Capsicum annuum HOM05D003678 ORTHO05D004340 3.0e-17 94.0 152 34.2
C03p31060 Brassica napus HOM05D003678 ORTHO05D004340 5.1e-17 93.2 239 30.5
BcaC05g27745 Brassica carinata HOM05D003678 ORTHO05D004340 7.3e-16 89.4 83 49.4
C05p37300 Brassica napus HOM05D003678 ORTHO05D004340 7.3e-16 89.4 83 49.4
C08p08900 Brassica napus HOM05D003678 ORTHO05D004340 1.6e-15 88.2 83 48.2
BolC1t05292H Brassica oleracea HOM05D003678 ORTHO05D004340 1.4e-14 85.1 234 29.9
Pp3c17_19500 Physcomitrium patens HOM05D003678 ORTHO05D004340 2.0e-13 81.3 51 64.7
BcaB03g16788 Brassica carinata HOM05D003678 ORTHO05D004340 9.9e-13 79.0 132 34.8
ECA246G4346 Erigeron canadensis HOM05D000087 ORTHO05D009473 1.7e-12 78.2 100 47.0
MCO10G355 Micromonas commoda HOM05D003678 ORTHO05D004340 2.4e-11 74.3 83 41.0
ECA246G0440 Erigeron canadensis HOM05D003678 ORTHO05D004340 1.3e-09 68.6 46 56.5
BcaC06g31298 Brassica carinata HOM05D003678 ORTHO05D004340 8.7e-09 65.9 64 45.3
Actinidia14145 Actinidia chinensis HOM05D003678 ORTHO05D004340 1.5e-08 65.1 89 38.2
BcaC09g48197 Brassica carinata HOM05D003678 ORTHO05D011193 1.9e-08 64.7 45 64.4
Medtr5g061270 Medicago truncatula HOM05D003678 ORTHO05D004340 1.6e-07 61.6 69 47.8
BcaC01g05020 Brassica carinata HOM05D003678 ORTHO05D004340 2.1e-07 61.2 66 45.5
A04p16990 Brassica napus HOM05D003678 ORTHO05D004340 4.7e-07 60.1 64 46.9
ECA233G0490 Erigeron canadensis HOM05D003678 ORTHO05D004340 3.1e-06 57.4 88 38.6
BcaC09g48198 Brassica carinata HOM05D003678 ORTHO05D004340 9.0e-06 55.8 54 51.9
Cfa024431 Carpinus fangiana HOM05D003678 ORTHO05D124744 9.0e-06 55.8 113 33.6


User provided reference genes

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