Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c25_5720 Physcomitrium patens HOM05D006184 ORTHO05D007862 0.0e+00 1345.9 667 100.0
Pp3c16_8630 Physcomitrium patens HOM05D006184 ORTHO05D007862 0.0e+00 1197.2 668 89.2
AagrBONN_evm.TU.Sc2ySwM_117.2039 Anthoceros agrestis HOM05D006184 ORTHO05D007862 0.0e+00 1077.0 595 86.7
Mapoly0078s0008 Marchantia polymorpha HOM05D006184 ORTHO05D007862 9.7e-305 1049.7 642 81.0
Medtr3g462950 Medicago truncatula HOM05D006184 ORTHO05D007862 1.8e-303 1045.4 602 82.1
Psat5g162200 Pisum sativum HOM05D006184 ORTHO05D007862 2.6e-302 1041.6 595 82.9
ECA248G3465 Erigeron canadensis HOM05D006184 ORTHO05D007862 4.5e-302 1040.8 601 82.7
Rhsim13G0072000 Rhododendron simsii HOM05D006184 ORTHO05D007862 4.5e-302 1040.8 592 84.0
SalBow2G2183 Salvia bowleyana HOM05D006184 ORTHO05D007862 4.5e-302 1040.8 570 86.8
HanXRQChr13g0388411 Helianthus annuus HOM05D006184 ORTHO05D007862 5.9e-302 1040.4 580 85.0
Hund04886 Selenicereus undatus HOM05D006184 ORTHO05D007862 1.0e-301 1039.6 601 82.0
AUR62001683 Chenopodium quinoa HOM05D006184 ORTHO05D007862 1.3e-301 1039.3 582 84.9
Ca_14911_v3 Cicer arietinum L. HOM05D006184 ORTHO05D007862 1.7e-301 1038.9 595 82.9
Ciclev10027988m.g Citrus clementina HOM05D006184 ORTHO05D007862 1.7e-301 1038.9 610 80.2
CsaV3_1G036050 Cucumis sativus L. HOM05D006184 ORTHO05D007862 3.8e-301 1037.7 605 81.2
AUR62020099 Chenopodium quinoa HOM05D006184 ORTHO05D007862 5.0e-301 1037.3 596 83.2
Medtr3g462970 Medicago truncatula HOM05D006184 ORTHO05D007862 5.0e-301 1037.3 602 81.9
Ah.15g099710 Amaranthus hybridus HOM05D006184 ORTHO05D007862 6.5e-301 1036.9 582 84.2
ClCG03G000880 Citrullus lanatus HOM05D006184 ORTHO05D007862 1.5e-300 1035.8 605 81.2
Lalb_Chr17g0345001 Lupinus albus HOM05D006184 ORTHO05D007862 1.9e-300 1035.4 585 83.8
Hma1.2p1_0227F.1_g096310 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 2.5e-300 1035.0 582 84.2
Nitab4.5_0001970g0070 Nicotiana tabacum HOM05D006184 ORTHO05D007862 4.2e-300 1034.2 582 84.7
EL10Ac7g16128 Beta vulgaris HOM05D006184 ORTHO05D007862 7.2e-300 1033.5 582 84.0
Nitab4.5_0000102g0140 Nicotiana tabacum HOM05D006184 ORTHO05D007862 7.2e-300 1033.5 582 84.9
Atru.chr3.4272 Acer truncatum HOM05D006184 ORTHO05D007862 9.4e-300 1033.1 594 83.0
DCAR_007390 Daucus carota HOM05D006184 ORTHO05D007862 9.4e-300 1033.1 584 84.6
HanXRQChr10g0298731 Helianthus annuus HOM05D006184 ORTHO05D007862 9.4e-300 1033.1 580 84.3
MSTRG.24765 Avicennia marina HOM05D006184 ORTHO05D007862 1.2e-299 1032.7 576 84.5
Migut.G00281 Erythranthe guttata HOM05D006184 ORTHO05D007862 1.2e-299 1032.7 656 77.9
FvH4_3g38200 Fragaria vesca HOM05D006184 ORTHO05D007862 1.2e-299 1032.7 600 82.8
Lj6g0009842 Lotus japonicus HOM05D006184 ORTHO05D007862 1.2e-299 1032.7 595 82.0
MELO3C020563.2 Cucumis melo HOM05D006184 ORTHO05D007862 1.6e-299 1032.3 647 77.1
ATR0564G389 Amborella trichopoda HOM05D006184 ORTHO05D007862 2.7e-299 1031.6 588 83.3
Cfa011654 Carpinus fangiana HOM05D006184 ORTHO05D007862 3.6e-299 1031.2 610 79.8
FAN25G1982 Fragaria x ananassa HOM05D006184 ORTHO05D007862 3.6e-299 1031.2 600 82.5
Phvul.006G065300 Phaseolus vulgaris HOM05D006184 ORTHO05D007862 3.6e-299 1031.2 599 81.8
Sopen06g002030 Solanum pennellii HOM05D006184 ORTHO05D007862 3.6e-299 1031.2 617 81.2
Duzib168G0250 Durio zibethinus HOM05D006184 ORTHO05D007862 4.7e-299 1030.8 592 82.8
FAN21G1896 Fragaria x ananassa HOM05D006184 ORTHO05D007862 4.7e-299 1030.8 600 82.5
Ah.08g220740 Amaranthus hybridus HOM05D006184 ORTHO05D007862 6.1e-299 1030.4 595 82.2
A05p15770 Brassica napus HOM05D006184 ORTHO05D007862 8.0e-299 1030.0 608 81.4
Manes.02G121696 Manihot esculenta HOM05D006184 ORTHO05D007862 1.0e-298 1029.6 582 83.3
Solyc06g006080.3 Solanum lycopersicum HOM05D006184 ORTHO05D007862 1.0e-298 1029.6 612 81.5
PGSC0003DMG400004151 Solanum tuberosum HOM05D006184 ORTHO05D007862 1.4e-298 1029.2 582 84.4
VMungo0540G2418 Vigna mungo HOM05D006184 ORTHO05D007862 1.4e-298 1029.2 600 81.8
BraA05t20491Z Brassica rapa HOM05D006184 ORTHO05D007862 1.8e-298 1028.9 608 81.2
RcHm_v2.0_Chr5g0068641 Rosa chinensis HOM05D006184 ORTHO05D007862 2.3e-298 1028.5 600 82.3
Thecc.09G305300 Theobroma cacao HOM05D006184 ORTHO05D007862 2.3e-298 1028.5 569 85.2
BcaC02g11044 Brassica carinata HOM05D006184 ORTHO05D007862 3.0e-298 1028.1 608 81.2
C04p21210 Brassica napus HOM05D006184 ORTHO05D007862 3.0e-298 1028.1 608 81.2
MD03G1074000 Malus domestica HOM05D006184 ORTHO05D007862 3.0e-298 1028.1 604 81.5
SMO272G0033 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 3.0e-298 1028.1 568 85.0
FAN16G1207 Fragaria x ananassa HOM05D006184 ORTHO05D007862 4.0e-298 1027.7 597 82.6
Lj1A141T56 Lonicera japonica HOM05D006184 ORTHO05D007862 4.0e-298 1027.7 582 83.7
PGR102G1950 Punica granatum HOM05D006184 ORTHO05D007862 4.0e-298 1027.7 598 82.3
BcaB02g10267 Brassica carinata HOM05D006184 ORTHO05D007862 5.2e-298 1027.3 608 81.1
Oeu009379.1 Olea europaea HOM05D006184 ORTHO05D007862 5.2e-298 1027.3 592 82.9
Thhalv10016370m.g Eutrema salsugineum HOM05D006184 ORTHO05D007862 6.8e-298 1026.9 621 80.2
arahy.Tifrunner.gnm1.ann1.F7MUQP Arachis hypogaea HOM05D006184 ORTHO05D007862 8.8e-298 1026.5 570 84.9
CARHR122950 Cardamine hirsuta HOM05D006184 ORTHO05D007862 8.8e-298 1026.5 608 80.9
Cc01_g13950 Coffea canephora HOM05D006184 ORTHO05D007862 8.8e-298 1026.5 591 82.4
Eucgr.B02273 Eucalyptus grandis HOM05D006184 ORTHO05D007862 8.8e-298 1026.5 599 81.6
FAN11G1847 Fragaria x ananassa HOM05D006184 ORTHO05D007862 8.8e-298 1026.5 593 82.8
Nn2g13623 Nelumbo nucifera HOM05D006184 ORTHO05D007862 8.8e-298 1026.5 601 81.7
Prupe.6G060700 Prunus persica HOM05D006184 ORTHO05D007862 1.2e-297 1026.2 582 83.3
MD11G1080300 Malus domestica HOM05D006184 ORTHO05D007862 1.5e-297 1025.8 597 82.1
COL.COLO4_19110 Corchorus olitorius HOM05D006184 ORTHO05D007862 2.6e-297 1025.0 582 83.3
Sc06g0008420 Simmondsia chinensis HOM05D006184 ORTHO05D007862 2.6e-297 1025.0 597 82.4
Aqoxy4G02661 Aquilegia oxysepala HOM05D006184 ORTHO05D007862 3.4e-297 1024.6 613 81.2
arahy.Tifrunner.gnm1.ann1.N1U5TX Arachis hypogaea HOM05D006184 ORTHO05D007862 3.4e-297 1024.6 570 84.9
Lsat_1_v5_gn_5_158421 Lactuca sativa HOM05D006184 ORTHO05D007862 3.4e-297 1024.6 594 82.0
Sc12g0000880 Simmondsia chinensis HOM05D006184 ORTHO05D007862 3.4e-297 1024.6 599 81.1
CSS0002743 Camellia sinensis var. sinensis HOM05D006184 ORTHO05D007862 4.4e-297 1024.2 569 84.5
Carub.0004s1072 Capsella rubella HOM05D006184 ORTHO05D007862 4.4e-297 1024.2 617 79.7
GSVIVG01024789001 Vitis vinifera HOM05D006184 ORTHO05D007862 4.4e-297 1024.2 588 83.2
Aa31LG5G7380 Aethionema arabicum HOM05D006184 ORTHO05D007862 5.7e-297 1023.8 592 81.8
Gorai.003G124300 Gossypium raimondii HOM05D006184 ORTHO05D007862 7.5e-297 1023.5 614 80.6
Gohir.A03G049500 Gossypium hirsutum HOM05D006184 ORTHO05D007862 9.7e-297 1023.1 614 80.6
Manes.01G164200 Manihot esculenta HOM05D006184 ORTHO05D007862 9.7e-297 1023.1 582 82.6
Potri.001G249200 Populus trichocarpa HOM05D006184 ORTHO05D007862 9.7e-297 1023.1 569 84.5
BolC4t23646H Brassica oleracea HOM05D006184 ORTHO05D007862 1.3e-296 1022.7 608 80.8
Gohir.D03G117800 Gossypium hirsutum HOM05D006184 ORTHO05D007862 1.7e-296 1022.3 614 80.5
Sp4g12340 Schrenkiella parvula HOM05D006184 ORTHO05D007862 1.7e-296 1022.3 644 77.8
QL01p026813 Quercus lobata HOM05D006184 ORTHO05D007862 2.2e-296 1021.9 594 81.6
CiPaw.13G080700 Carya illinoinensis HOM05D006184 ORTHO05D007862 3.7e-296 1021.1 601 80.9
Potri.009G043200 Populus trichocarpa HOM05D006184 ORTHO05D007862 6.3e-296 1020.4 634 78.1
Actinidia38827 Actinidia chinensis HOM05D006184 ORTHO05D007862 8.3e-296 1020.0 596 81.9
Glyma.18G065700 Glycine max HOM05D006184 ORTHO05D007862 8.3e-296 1020.0 645 77.4
AL4G24380 Arabidopsis lyrata HOM05D006184 ORTHO05D007862 1.8e-295 1018.8 580 83.4
AT2G29630 Arabidopsis thaliana HOM05D006184 ORTHO05D007862 1.8e-295 1018.8 608 80.3
Sed0012033 Sechium edule HOM05D006184 ORTHO05D007862 1.8e-295 1018.8 641 76.6
Sabra09G0030600 Salix brachista HOM05D006184 ORTHO05D007862 3.1e-295 1018.1 577 83.0
Oeu049272.2 Olea europaea HOM05D006184 ORTHO05D007862 9.1e-295 1016.5 569 84.7
TWI79G1750 Tripterygium wilfordii HOM05D006184 ORTHO05D007862 9.1e-295 1016.5 597 81.1
Os03g0679700 Oryza sativa ssp. japonica HOM05D006184 ORTHO05D007862 1.2e-294 1016.1 602 79.7
MBI05_g03463_MAGBIO Magnolia biondii HOM05D006184 ORTHO05D007862 1.6e-294 1015.8 615 80.5
TAR633G0598 Trochodendron aralioides HOM05D006184 ORTHO05D007862 3.5e-294 1014.6 587 82.3
CDE03G0407 Ceratophyllum demersum HOM05D006184 ORTHO05D007862 4.5e-294 1014.2 581 82.3
Zm00001eb051950 Zea mays HOM05D006184 ORTHO05D007862 1.7e-293 1012.3 641 76.3
Glyma.11G176200 Glycine max HOM05D006184 ORTHO05D007862 3.8e-293 1011.1 597 80.4
SMO165G0141 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 3.8e-293 1011.1 554 85.4
Peaxi162Scf00216g00033 Petunia axillaris HOM05D006184 ORTHO05D007862 8.5e-293 1010.0 593 82.3
CDE04G0688 Ceratophyllum demersum HOM05D006184 ORTHO05D007862 1.1e-292 1009.6 597 80.4
Peaxi162Scf00451g00511 Petunia axillaris HOM05D006184 ORTHO05D007862 3.2e-292 1008.1 593 82.0
SGA_v2.0_scaffold142G35644 Striga asiatica HOM05D006184 ORTHO05D007862 9.4e-292 1006.5 595 80.0
Cpa.g.sc112.53 Carica papaya HOM05D006184 ORTHO05D007862 3.1e-287 991.5 592 80.4
HPP92_012628 Vanilla planifolia HOM05D006184 ORTHO05D007862 2.8e-283 978.4 542 85.2
Dinv28618 Davidia involucrata HOM05D006184 ORTHO05D007862 5.7e-281 970.7 540 84.8
CAN.G780.2 Capsicum annuum HOM05D006184 ORTHO05D007862 9.8e-281 969.9 582 80.9
Haze_24258 Corylus avellana HOM05D006184 ORTHO05D007862 6.4e-272 940.6 610 75.2
TPR.G13280 Trifolium pratense HOM05D006184 ORTHO05D007862 2.5e-268 928.7 595 76.0
SHI12345 Sapria himalayana HOM05D006184 ORTHO05D007862 1.8e-266 922.5 611 72.8
CBR_g30996 Chara braunii HOM05D006184 ORTHO05D007862 4.0e-258 894.8 482 87.6
Cfa015458 Carpinus fangiana HOM05D006184 ORTHO05D007862 4.3e-244 848.2 610 68.7
Cre05.g240850 Chlamydomonas reinhardtii HOM05D006184 ORTHO05D007862 8.1e-227 790.8 548 70.4
Haze_26876 Corylus avellana HOM05D006184 ORTHO05D007862 1.0e-189 667.5 582 57.7
Sabra16G0151300 Salix brachista HOM05D006184 ORTHO05D007862 8.8e-173 611.3 367 78.7
vmacro02987 Vaccinium macrocarpon HOM05D006184 ORTHO05D007862 4.4e-164 582.4 347 80.4
RcHm_v2.0_Chr5g0068681 Rosa chinensis HOM05D006184 ORTHO05D007862 2.3e-141 506.9 267 87.6
SMO165G0069 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 6.4e-131 472.2 643 45.7
SEGI_15306 Sequoiadendron giganteum HOM05D006184 ORTHO05D007862 1.5e-74 285.0 229 63.8
Nn2g11393 Nelumbo nucifera HOM05D006184 ORTHO05D007862 5.0e-67 260.0 125 92.8
Nn2g11394 Nelumbo nucifera HOM05D006184 ORTHO05D049308 1.1e-37 162.5 105 73.3
RcHm_v2.0_Chr5g0068691 Rosa chinensis HOM05D006184 ORTHO05D049308 5.0e-35 153.7 94 83.0
Actinidia16074 Actinidia chinensis HOM05D006184 ORTHO05D007862 3.1e-32 144.4 153 56.2
Hma1.2p1_2020F.1_g311280 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 6.0e-20 103.6 53 92.5
Nn2g11392 Nelumbo nucifera HOM05D006184 ORTHO05D007862 1.3e-19 102.4 155 43.9
Hma1.2p1_0315F.1_g122560 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 6.6e-19 100.1 53 90.6
Ah.02g117460 Amaranthus hybridus HOM05D000595 ORTHO05D004141 5.3e-08 63.9 32 90.6


User provided reference genes

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