Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c25_15020 Physcomitrium patens HOM05D004151 ORTHO05D004775 5.0e-66 255.0 168 100.0
Pp3c5_28430 Physcomitrium patens HOM05D004151 ORTHO05D004775 3.7e-61 238.8 149 92.6
Ah.06g191800 Amaranthus hybridus HOM05D004151 ORTHO05D004775 1.8e-47 193.4 153 77.1
TWI32G1207 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 2.3e-47 193.0 154 79.2
AagrBONN_evm.TU.Sc2ySwM_362.2901 Anthoceros agrestis HOM05D004151 ORTHO05D004775 3.0e-47 192.6 111 83.8
Carub.0003s0316 Capsella rubella HOM05D004151 ORTHO05D004775 3.0e-47 192.6 155 76.1
Sabra13G0051900 Salix brachista HOM05D004151 ORTHO05D004775 4.0e-47 192.2 131 77.9
TWI34G0161 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 4.0e-47 192.2 109 80.7
HPP92_021240 Vanilla planifolia HOM05D004151 ORTHO05D004775 5.2e-47 191.8 150 78.7
Cfa016441 Carpinus fangiana HOM05D004151 ORTHO05D004775 6.8e-47 191.4 152 75.7
Haze_19418 Corylus avellana HOM05D004151 ORTHO05D004775 6.8e-47 191.4 152 75.7
Haze_19447 Corylus avellana HOM05D004151 ORTHO05D004775 6.8e-47 191.4 152 75.7
SGA_v2.0_scaffold274G46513 Striga asiatica HOM05D004151 ORTHO05D004775 6.8e-47 191.4 108 82.4
A01p41270 Brassica napus HOM05D004151 ORTHO05D004775 8.9e-47 191.0 151 74.2
BNapus_Darmor_BZH_scaffold_78p00440 Brassica napus HOM05D004151 ORTHO05D004775 8.9e-47 191.0 151 74.2
BraA01t04550Z Brassica rapa HOM05D004151 ORTHO05D004775 8.9e-47 191.0 151 73.5
CARHR078040 Cardamine hirsuta HOM05D004151 ORTHO05D004775 1.5e-46 190.3 152 67.8
THA.LOC104827273 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 1.5e-46 190.3 148 75.7
PGSC0003DMG400008366 Solanum tuberosum HOM05D004151 ORTHO05D004775 2.0e-46 189.9 149 73.2
FvH4_1g30320 Fragaria vesca HOM05D004151 ORTHO05D004775 2.6e-46 189.5 113 78.8
FAN19G1796 Fragaria x ananassa HOM05D004151 ORTHO05D004775 2.6e-46 189.5 113 78.8
FAN26G2823 Fragaria x ananassa HOM05D004151 ORTHO05D004775 2.6e-46 189.5 113 78.8
RcHm_v2.0_Chr3g0490211 Rosa chinensis HOM05D004151 ORTHO05D004775 2.6e-46 189.5 113 78.8
Sp3g02890 Schrenkiella parvula HOM05D004151 ORTHO05D004775 2.6e-46 189.5 104 81.7
Aa31LG5G14500 Aethionema arabicum HOM05D004151 ORTHO05D004775 3.4e-46 189.1 104 82.7
Thhalv10021561m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 3.4e-46 189.1 104 81.7
Peaxi162Scf00003g04832 Petunia axillaris HOM05D004151 ORTHO05D004775 3.4e-46 189.1 158 64.6
THA.LOC104802867 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 3.4e-46 189.1 150 78.0
CiPaw.09G001900 Carya illinoinensis HOM05D004151 ORTHO05D004775 4.4e-46 188.7 151 75.5
Manes.09G141400 Manihot esculenta HOM05D004151 ORTHO05D004775 4.4e-46 188.7 109 78.0
Mapoly0086s0024 Marchantia polymorpha HOM05D004151 ORTHO05D004775 4.4e-46 188.7 147 83.0
Solyc10g078540.3 Solanum lycopersicum HOM05D004151 ORTHO05D004775 4.4e-46 188.7 149 72.5
Sopen10g029190 Solanum pennellii HOM05D004151 ORTHO05D004775 4.4e-46 188.7 149 72.5
VMungo1383G2477 Vigna mungo HOM05D004151 ORTHO05D004775 4.4e-46 188.7 148 79.7
BcaNung05745 Brassica carinata HOM05D004151 ORTHO05D004775 5.7e-46 188.3 109 79.8
Hund24835 Selenicereus undatus HOM05D004151 ORTHO05D004775 5.7e-46 188.3 99 86.9
Aa31LG11G11430 Aethionema arabicum HOM05D004151 ORTHO05D004775 7.5e-46 188.0 104 81.7
BolC1t05799H Brassica oleracea HOM05D004151 ORTHO05D004775 7.5e-46 188.0 155 73.5
Thhalv10014755m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 7.5e-46 188.0 109 80.7
Lalb_Chr14g0364491 Lupinus albus HOM05D004151 ORTHO05D004775 7.5e-46 188.0 149 73.2
Oeu059999.1 Olea europaea HOM05D004151 ORTHO05D004775 7.5e-46 188.0 147 68.7
TAR369G0512 Trochodendron aralioides HOM05D004151 ORTHO05D004775 7.5e-46 188.0 107 79.4
Lsat_1_v5_gn_8_145841 Lactuca sativa HOM05D004151 ORTHO05D004775 9.8e-46 187.6 108 80.6
Os11g0579800 Oryza sativa ssp. japonica HOM05D004151 ORTHO05D004775 9.8e-46 187.6 106 79.2
MSTRG.19934 Avicennia marina HOM05D004151 ORTHO05D004775 1.3e-45 187.2 150 74.0
FAN23G0170 Fragaria x ananassa HOM05D004151 ORTHO05D004775 1.3e-45 187.2 113 77.9
EL10Ac3g06820 Beta vulgaris HOM05D004151 ORTHO05D004775 1.7e-45 186.8 99 83.8
BcaNung05743 Brassica carinata HOM05D004151 ORTHO05D004775 1.7e-45 186.8 150 74.7
Lsat_1_v5_gn_8_24760 Lactuca sativa HOM05D004151 ORTHO05D004775 1.7e-45 186.8 105 81.0
unitig_21.g20195 Utricularia gibba HOM05D004151 ORTHO05D004775 1.7e-45 186.8 108 80.6
Lalb_Chr22g0359191 Lupinus albus HOM05D004151 ORTHO05D004775 2.2e-45 186.4 155 72.3
Manes.08G144000 Manihot esculenta HOM05D004151 ORTHO05D004775 2.2e-45 186.4 152 74.3
AT3G03920 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 2.8e-45 186.0 158 76.6
arahy.Tifrunner.gnm1.ann1.JDMG7B Arachis hypogaea HOM05D004151 ORTHO05D004775 2.8e-45 186.0 144 79.9
arahy.Tifrunner.gnm1.ann1.PLSY77 Arachis hypogaea HOM05D004151 ORTHO05D004775 2.8e-45 186.0 144 79.9
Glyma.16G041400 Glycine max HOM05D004151 ORTHO05D004775 2.8e-45 186.0 148 75.0
CARHR194880 Cardamine hirsuta HOM05D004151 ORTHO05D004775 3.7e-45 185.7 151 75.5
TPR.G5895 Trifolium pratense HOM05D004151 ORTHO05D004775 3.7e-45 185.7 168 78.0
AL3G13810 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 4.9e-45 185.3 158 76.6
ClCG04G005310 Citrullus lanatus HOM05D004151 ORTHO05D004775 4.9e-45 185.3 107 79.4
CsaV3_4G013280 Cucumis sativus L. HOM05D004151 ORTHO05D004775 4.9e-45 185.3 107 79.4
Phvul.001G110400 Phaseolus vulgaris HOM05D004151 ORTHO05D004775 4.9e-45 185.3 155 74.2
Potri.013G058400 Populus trichocarpa HOM05D004151 ORTHO05D004775 4.9e-45 185.3 104 79.8
CANSAT78G0749 Cannabis sativa HOM05D004151 ORTHO05D004775 6.3e-45 184.9 99 84.8
CDE06G0359 Ceratophyllum demersum HOM05D004151 ORTHO05D004775 6.3e-45 184.9 108 81.5
MELO3C008801.2 Cucumis melo HOM05D004151 ORTHO05D004775 6.3e-45 184.9 148 77.7
Lj1g0021266 Lotus japonicus HOM05D004151 ORTHO05D004775 6.3e-45 184.9 176 71.0
Nn7g35851 Nelumbo nucifera HOM05D004151 ORTHO05D004775 6.3e-45 184.9 105 81.0
SEGI_32651 Sequoiadendron giganteum HOM05D004151 ORTHO05D004775 6.3e-45 184.9 148 77.7
Cc06_g22960 Coffea canephora HOM05D004151 ORTHO05D004775 8.3e-45 184.5 107 77.6
PSO063G0165 Papaver somniferum HOM05D004151 ORTHO05D004775 8.3e-45 184.5 111 78.4
Sed0023399 Sechium edule HOM05D004151 ORTHO05D004775 8.3e-45 184.5 150 78.7
Ah.13g075350 Amaranthus hybridus HOM05D004151 ORTHO05D004775 1.1e-44 184.1 154 76.6
AUR62032690 Chenopodium quinoa HOM05D004151 ORTHO05D004775 1.1e-44 184.1 98 84.7
HanXRQChr08g0216931 Helianthus annuus HOM05D004151 ORTHO05D004775 1.1e-44 184.1 104 79.8
Psat0s1971g0280 Pisum sativum HOM05D004151 ORTHO05D004775 1.1e-44 184.1 149 77.9
CSS0045523 Camellia sinensis var. sinensis HOM05D004151 ORTHO05D004775 1.4e-44 183.7 152 74.3
Nitab4.5_0007542g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 1.4e-44 183.7 108 78.7
Thecc.05G294500 Theobroma cacao HOM05D004151 ORTHO05D004775 1.4e-44 183.7 107 77.6
GSVIVG01033401001 Vitis vinifera HOM05D004151 ORTHO05D004775 1.4e-44 183.7 109 78.0
COL.COLO4_13597 Corchorus olitorius HOM05D004151 ORTHO05D004775 1.8e-44 183.3 98 83.7
Duzib177G0709 Durio zibethinus HOM05D004151 ORTHO05D004775 1.8e-44 183.3 149 75.8
HanXRQChr07g0204461 Helianthus annuus HOM05D004151 ORTHO05D004775 1.8e-44 183.3 104 80.8
Potri.019G034900 Populus trichocarpa HOM05D004151 ORTHO05D004775 1.8e-44 183.3 107 78.5
QL07p019530 Quercus lobata HOM05D004151 ORTHO05D004775 1.8e-44 183.3 106 78.3
BolC3t13499H Brassica oleracea HOM05D004151 ORTHO05D004775 3.1e-44 182.6 165 71.5
Nitab4.5_0009048g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 3.1e-44 182.6 127 79.5
PGR142G1491 Punica granatum HOM05D004151 ORTHO05D004775 3.1e-44 182.6 103 80.6
Sp6g26140 Schrenkiella parvula HOM05D004151 ORTHO05D004775 3.1e-44 182.6 150 75.3
Sc25g0004980 Simmondsia chinensis HOM05D004151 ORTHO05D004775 3.1e-44 182.6 109 75.2
Zm00001eb200450 Zea mays HOM05D004151 ORTHO05D004775 3.1e-44 182.6 144 80.6
Aqoxy1G00486 Aquilegia oxysepala HOM05D004151 ORTHO05D004775 4.1e-44 182.2 145 75.9
Dinv14579 Davidia involucrata HOM05D004151 ORTHO05D004775 5.4e-44 181.8 107 79.4
ECA233G5487 Erigeron canadensis HOM05D004151 ORTHO05D004775 5.4e-44 181.8 111 76.6
Hma1.2p1_0134F.1_g061640 Hydrangea macrophylla HOM05D004151 ORTHO05D004775 5.4e-44 181.8 159 74.2
PSO782G4796 Papaver somniferum HOM05D004151 ORTHO05D004775 5.4e-44 181.8 111 77.5
CBR_g48747 Chara braunii HOM05D004151 ORTHO05D004775 7.0e-44 181.4 107 81.3
Glyma.19G110900 Glycine max HOM05D004151 ORTHO05D004775 7.0e-44 181.4 163 66.9
Cre13.g567850 Chlamydomonas reinhardtii HOM05D004151 ORTHO05D004775 9.2e-44 181.0 154 76.6
Sed0025621 Sechium edule HOM05D004151 ORTHO05D004775 9.2e-44 181.0 107 77.6
MD05G1045500 Malus domestica HOM05D004151 ORTHO05D004775 1.2e-43 180.6 108 76.9
Medtr7g085640 Medicago truncatula HOM05D004151 ORTHO05D004775 1.2e-43 180.6 154 76.0
Carub.0006s1646 Capsella rubella HOM05D004151 ORTHO05D004775 1.6e-43 180.3 110 74.5
ATR0697G007 Amborella trichopoda HOM05D004151 ORTHO05D004775 2.0e-43 179.9 97 85.6
Dinv37014 Davidia involucrata HOM05D004151 ORTHO05D004775 2.0e-43 179.9 167 70.1
Migut.J01888 Erythranthe guttata HOM05D004151 ORTHO05D004775 2.0e-43 179.9 109 77.1
Gohir.A08G213200 Gossypium hirsutum HOM05D004151 ORTHO05D004775 2.0e-43 179.9 99 81.8
Gohir.D08G230300 Gossypium hirsutum HOM05D004151 ORTHO05D004775 2.0e-43 179.9 99 81.8
Gorai.004G244500 Gossypium raimondii HOM05D004151 ORTHO05D004775 2.0e-43 179.9 99 81.8
BcaB01g05179 Brassica carinata HOM05D004151 ORTHO05D004775 2.7e-43 179.5 165 70.9
A03p08690 Brassica napus HOM05D004151 ORTHO05D004775 2.7e-43 179.5 176 68.2
C03p10140 Brassica napus HOM05D004151 ORTHO05D004775 2.7e-43 179.5 165 70.9
BraA03t10192Z Brassica rapa HOM05D004151 ORTHO05D004775 2.7e-43 179.5 165 70.9
Duzib106G1401 Durio zibethinus HOM05D004151 ORTHO05D004775 2.7e-43 179.5 152 71.7
PSO384G0229 Papaver somniferum HOM05D004151 ORTHO05D004775 2.7e-43 179.5 148 77.0
SalBow5G4201 Salvia bowleyana HOM05D004151 ORTHO05D004775 2.7e-43 179.5 98 81.6
AT5G18180 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 3.5e-43 179.1 108 75.0
Oeu049600.1 Olea europaea HOM05D004151 ORTHO05D004775 3.5e-43 179.1 168 77.4
PSO339G5713 Papaver somniferum HOM05D004151 ORTHO05D004775 4.5e-43 178.7 142 78.9
Prupe.8G064800 Prunus persica HOM05D004151 ORTHO05D004775 5.9e-43 178.3 109 75.2
vmacro09141 Vaccinium macrocarpon HOM05D004151 ORTHO05D004775 7.8e-43 177.9 101 81.2
MD00G1189600 Malus domestica HOM05D004151 ORTHO05D004775 1.3e-42 177.2 108 75.9
FAN28G2413 Fragaria x ananassa HOM05D004151 ORTHO05D004775 2.9e-42 176.0 98 80.6
AL6G29380 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 3.8e-42 175.6 109 75.2
Atru.chr5.2062 Acer truncatum HOM05D004151 ORTHO05D004775 5.0e-42 175.3 108 75.0
Gohir.D11G310400 Gossypium hirsutum HOM05D004151 ORTHO05D004775 5.0e-42 175.3 99 79.8
Gorai.007G343400 Gossypium raimondii HOM05D004151 ORTHO05D004775 5.0e-42 175.3 99 79.8
Actinidia22083 Actinidia chinensis HOM05D004151 ORTHO05D004775 6.6e-42 174.9 141 77.3
BcaC03g13582 Brassica carinata HOM05D004151 ORTHO05D004775 8.6e-42 174.5 167 64.7
BolC2t06882H Brassica oleracea HOM05D004151 ORTHO05D004775 8.6e-42 174.5 167 64.7
Gohir.A11G296500 Gossypium hirsutum HOM05D004151 ORTHO05D004775 1.5e-41 173.7 99 78.8
Sabra19G0042500 Salix brachista HOM05D004151 ORTHO05D004775 1.5e-41 173.7 138 80.4
Sabra19G0044800 Salix brachista HOM05D004151 ORTHO05D004775 1.5e-41 173.7 138 80.4
Rhsim04G0087500 Rhododendron simsii HOM05D004151 ORTHO05D004775 2.5e-41 172.9 95 84.2
Atru.chr5.2060 Acer truncatum HOM05D004151 ORTHO05D004775 7.3e-41 171.4 108 74.1
A02p04770 Brassica napus HOM05D004151 ORTHO05D004775 7.3e-41 171.4 159 65.4
C02p09730 Brassica napus HOM05D004151 ORTHO05D004775 9.5e-41 171.0 167 64.1
Zm00001eb114360 Zea mays HOM05D004151 ORTHO05D004775 9.5e-41 171.0 185 63.8
BcaB05g23300 Brassica carinata HOM05D004151 ORTHO05D004775 2.1e-40 169.9 146 71.2
BraA02t05436Z Brassica rapa HOM05D004151 ORTHO05D004775 3.6e-40 169.1 127 65.4
Cpa.g.sc51.114 Carica papaya HOM05D004151 ORTHO05D004775 1.0e-39 167.5 94 81.9
COL.COLO4_13598 Corchorus olitorius HOM05D004151 ORTHO05D004775 1.0e-39 167.5 99 77.8
Nitab4.5_0004844g0050 Nicotiana tabacum HOM05D004151 ORTHO05D004775 1.4e-39 167.2 89 84.3
CAN.G960.49 Capsicum annuum HOM05D004151 ORTHO05D004775 6.8e-39 164.9 95 80.0
Peaxi162Scf00076g01048 Petunia axillaris HOM05D004151 ORTHO05D004775 2.2e-37 159.8 109 74.3
Hund19236 Selenicereus undatus HOM05D004151 ORTHO05D004775 1.1e-36 157.5 104 72.1
Ca_08267_v3 Cicer arietinum L. HOM05D004151 ORTHO05D004775 1.9e-36 156.8 90 77.8
Nitab4.5_0002769g0090 Nicotiana tabacum HOM05D004151 ORTHO05D004775 7.0e-36 154.8 111 69.4
MCO13G219 Micromonas commoda HOM05D004151 ORTHO05D004775 2.0e-35 153.3 141 64.5
SMO347G0554 Selaginella moellendorffii HOM05D004151 ORTHO05D004775 4.3e-33 145.6 149 68.5
MBI11_g31283_MAGBIO Magnolia biondii HOM05D004151 ORTHO05D004775 1.2e-32 144.1 79 81.0
BolC2t11912H Brassica oleracea HOM05D004151 ORTHO05D004775 7.5e-30 134.8 128 57.8
C09p58800 Brassica napus HOM05D004151 ORTHO05D004775 4.1e-28 129.0 88 64.8
BraA10t42874Z Brassica rapa HOM05D004151 ORTHO05D004775 8.6e-26 121.3 105 61.0
PRCOL_00005119 Prasinoderma coloniale HOM05D005848 ORTHO05D007532 1.5e-25 120.6 76 67.1
unitig_744.g24550 Utricularia gibba HOM05D004151 ORTHO05D004775 1.8e-23 113.6 59 84.7
Haze_27090 Corylus avellana HOM05D000590 ORTHO05D004775 3.4e-22 109.4 114 49.1
C02p58510 Brassica napus HOM05D004151 ORTHO05D004775 1.4e-20 104.0 94 57.4
Actinidia30553 Actinidia chinensis HOM05D004151 ORTHO05D004775 4.1e-20 102.4 58 79.3
Zm00001eb274230 Zea mays HOM05D004151 ORTHO05D004775 2.3e-18 96.7 50 82.0
HanXRQChr05g0143841 Helianthus annuus HOM05D004151 ORTHO05D004775 4.3e-17 92.4 109 48.6
Oeu035726.1 Olea europaea HOM05D004151 ORTHO05D004775 1.4e-15 87.4 60 66.7
Oeu035720.1 Olea europaea HOM05D004151 ORTHO05D004775 1.8e-15 87.0 60 65.0
BcaB08g36698 Brassica carinata HOM05D004151 ORTHO05D004775 3.9e-10 69.3 45 68.9
Atru.chr10.1764 Acer truncatum HOM05D004151 ORTHO05D004775 2.5e-09 66.6 44 70.5
Atru.chr5.2304 Acer truncatum HOM05D004151 ORTHO05D004775 2.5e-09 66.6 44 70.5
Atru.chr6.7 Acer truncatum HOM05D004151 ORTHO05D004775 7.3e-09 65.1 44 68.2
Atru.chr13.534 Acer truncatum HOM05D004151 ORTHO05D004775 2.1e-08 63.5 44 68.2
Atru.chr2.3197 Acer truncatum HOM05D004151 ORTHO05D004775 2.1e-08 63.5 44 68.2
Atru.chr4.2011 Acer truncatum HOM05D004151 ORTHO05D004775 2.1e-08 63.5 44 68.2
BolC9t58722H Brassica oleracea HOM05D004151 ORTHO05D004775 2.1e-08 63.5 37 75.7
ECA246G0128 Erigeron canadensis HOM05D001659 ORTHO05D001659 6.9e-07 58.5 39 69.2


User provided reference genes

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