Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c24_4920 Physcomitrium patens HOM05D003391 ORTHO05D005563 0.0e+00 1579.3 835 100.0
Pp3c8_8190 Physcomitrium patens HOM05D003391 ORTHO05D005563 0.0e+00 1471.4 838 93.2
Mapoly0030s0152 Marchantia polymorpha HOM05D003391 ORTHO05D005563 0.0e+00 1183.7 829 76.5
SMO196G0220 Selaginella moellendorffii HOM05D003391 ORTHO05D005563 0.0e+00 1075.8 830 69.0
ATR1098G037 Amborella trichopoda HOM05D003391 ORTHO05D005563 4.8e-285 984.6 832 63.3
Cc06_g14340 Coffea canephora HOM05D003391 ORTHO05D005563 8.5e-282 973.8 821 62.7
GSVIVG01016094001 Vitis vinifera HOM05D003391 ORTHO05D005563 7.2e-281 970.7 838 61.6
TAR626G0891 Trochodendron aralioides HOM05D003391 ORTHO05D005563 1.2e-280 969.9 833 62.4
Dinv10208 Davidia involucrata HOM05D003391 ORTHO05D005563 2.7e-280 968.8 747 66.8
Aqoxy3G00251 Aquilegia oxysepala HOM05D003391 ORTHO05D005563 6.1e-280 967.6 832 62.1
QL04p065456 Quercus lobata HOM05D003391 ORTHO05D005563 5.2e-279 964.5 830 62.2
Duzib084G0647 Durio zibethinus HOM05D003391 ORTHO05D005563 1.5e-278 963.0 833 61.8
Sopen04g019460 Solanum pennellii HOM05D003391 ORTHO05D005563 2.6e-278 962.2 828 61.5
Solyc04g049490.3 Solanum lycopersicum HOM05D003391 ORTHO05D005563 4.4e-278 961.4 828 61.4
CANSAT64G0651 Cannabis sativa HOM05D003391 ORTHO05D005563 2.2e-277 959.1 831 61.9
MD09G1135000 Malus domestica HOM05D003391 ORTHO05D005563 2.8e-277 958.7 834 61.5
CAN.G466.12 Capsicum annuum HOM05D003391 ORTHO05D005563 4.8e-277 958.0 835 61.1
Cpa.g.sc122.39 Carica papaya HOM05D003391 ORTHO05D005563 6.3e-277 957.6 824 61.0
Gorai.004G190000 Gossypium raimondii HOM05D003391 ORTHO05D005563 1.1e-276 956.8 833 61.5
Phvul.006G134000 Phaseolus vulgaris HOM05D003391 ORTHO05D005563 1.1e-276 956.8 826 61.5
EL10Ac9g21140 Beta vulgaris HOM05D003391 ORTHO05D005563 1.4e-276 956.4 834 61.3
Nn7g37683 Nelumbo nucifera HOM05D003391 ORTHO05D005563 1.4e-276 956.4 835 60.7
Sed0012933 Sechium edule HOM05D003391 ORTHO05D005563 1.4e-276 956.4 827 61.4
Gohir.D08G181000 Gossypium hirsutum HOM05D003391 ORTHO05D005563 3.1e-276 955.3 833 61.3
VMungo0540G0836 Vigna mungo HOM05D003391 ORTHO05D005563 3.1e-276 955.3 826 61.4
Glyma.09G018300 Glycine max HOM05D003391 ORTHO05D005563 4.1e-276 954.9 825 61.1
PSO675G3205 Papaver somniferum HOM05D003391 ORTHO05D005563 4.1e-276 954.9 832 60.7
CsaV3_4G032190 Cucumis sativus L. HOM05D003391 ORTHO05D005563 5.3e-276 954.5 830 61.1
MELO3C026391.2 Cucumis melo HOM05D003391 ORTHO05D005563 9.1e-276 953.7 830 61.1
Gohir.A08G160766 Gossypium hirsutum HOM05D003391 ORTHO05D005563 2.6e-275 952.2 829 61.0
CAN.G998.14 Capsicum annuum HOM05D003391 ORTHO05D005563 3.5e-275 951.8 835 60.6
CiPaw.10G102000 Carya illinoinensis HOM05D003391 ORTHO05D005563 3.5e-275 951.8 823 61.5
TPR.G10474 Trifolium pratense HOM05D003391 ORTHO05D005563 7.7e-275 950.7 825 61.1
Lj6g0008612 Lotus japonicus HOM05D003391 ORTHO05D005563 1.3e-274 949.9 824 61.2
Lalb_Chr18g0057621 Lupinus albus HOM05D003391 ORTHO05D005563 1.3e-274 949.9 828 61.1
Thecc.03G235800 Theobroma cacao HOM05D003391 ORTHO05D005563 1.3e-274 949.9 830 61.2
Medtr2g028270 Medicago truncatula HOM05D003391 ORTHO05D005563 1.7e-274 949.5 824 60.9
MD17G1124000 Malus domestica HOM05D003391 ORTHO05D005563 2.9e-274 948.7 833 61.0
PSO541G1880 Papaver somniferum HOM05D003391 ORTHO05D005563 2.9e-274 948.7 837 60.3
FvH4_6g40130 Fragaria vesca HOM05D003391 ORTHO05D005563 6.5e-274 947.6 830 60.7
Prupe.3G191700 Prunus persica HOM05D003391 ORTHO05D005563 8.5e-274 947.2 829 60.8
Glyma.15G124200 Glycine max HOM05D003391 ORTHO05D005563 1.1e-273 946.8 821 60.8
FAN02G4219 Fragaria x ananassa HOM05D003391 ORTHO05D005563 1.5e-273 946.4 831 60.9
arahy.Tifrunner.gnm1.ann1.635YAA Arachis hypogaea HOM05D003391 ORTHO05D005563 1.9e-273 946.0 825 61.1
Migut.F02007 Erythranthe guttata HOM05D003391 ORTHO05D005563 1.9e-273 946.0 833 61.0
Atru.chr13.1465 Acer truncatum HOM05D003391 ORTHO05D005563 4.2e-273 944.9 829 60.3
MBI18_g28220_MAGBIO Magnolia biondii HOM05D003391 ORTHO05D005563 4.2e-273 944.9 807 62.9
RcHm_v2.0_Chr2g0154761 Rosa chinensis HOM05D003391 ORTHO05D005563 4.2e-273 944.9 831 60.3
SalBow4G0334 Salvia bowleyana HOM05D003391 ORTHO05D005563 4.2e-273 944.9 826 61.5
MSTRG.27454 Avicennia marina HOM05D003391 ORTHO05D005563 5.5e-273 944.5 831 60.3
ECA236G2623 Erigeron canadensis HOM05D003391 ORTHO05D005563 5.5e-273 944.5 819 60.3
PGR042G2316 Punica granatum HOM05D003391 ORTHO05D005563 7.2e-273 944.1 836 60.3
Cfa018226 Carpinus fangiana HOM05D003391 ORTHO05D005563 9.4e-273 943.7 829 61.0
Manes.01G037700 Manihot esculenta HOM05D003391 ORTHO05D005563 1.2e-272 943.3 829 60.7
Migut.F01784 Erythranthe guttata HOM05D003391 ORTHO05D005563 3.6e-272 941.8 826 60.7
TWI74G0249 Tripterygium wilfordii HOM05D003391 ORTHO05D005563 6.1e-272 941.0 830 61.1
FAN09G1714 Fragaria x ananassa HOM05D003391 ORTHO05D005563 8.0e-272 940.6 828 60.6
THA.LOC104809239 Tarenaya hassleriana HOM05D003391 ORTHO05D005563 3.0e-271 938.7 826 59.9
Zm00001eb144220 Zea mays HOM05D003391 ORTHO05D005563 3.0e-271 938.7 846 58.7
FAN05G0705 Fragaria x ananassa HOM05D003391 ORTHO05D005563 5.2e-271 937.9 832 60.7
TWI77G0821 Tripterygium wilfordii HOM05D003391 ORTHO05D005563 5.2e-271 937.9 834 60.4
Hma1.2p1_0583F.1_g183000 Hydrangea macrophylla HOM05D003391 ORTHO05D005563 6.7e-271 937.6 832 60.2
vmacro13793 Vaccinium macrocarpon HOM05D003391 ORTHO05D005563 1.5e-270 936.4 826 60.3
MSTRG.9187 Avicennia marina HOM05D003391 ORTHO05D005563 2.0e-270 936.0 822 60.9
Aa31LG10G3790 Aethionema arabicum HOM05D003391 ORTHO05D005563 6.3e-269 931.0 832 59.5
Potri.016G023000 Populus trichocarpa HOM05D003391 ORTHO05D005563 2.4e-268 929.1 826 60.0
HanXRQChr04g0122221 Helianthus annuus HOM05D003391 ORTHO05D005563 7.0e-268 927.5 814 59.3
Carub.0001s3957 Capsella rubella HOM05D003391 ORTHO05D005563 4.5e-267 924.9 829 58.9
AL1G58160 Arabidopsis lyrata HOM05D003391 ORTHO05D005563 1.0e-266 923.7 833 58.2
CSS0020230 Camellia sinensis var. sinensis HOM05D003391 ORTHO05D005563 1.0e-266 923.7 837 58.8
A05p20100 Brassica napus HOM05D003391 ORTHO05D005563 1.3e-266 923.3 833 58.3
C05p33590 Brassica napus HOM05D003391 ORTHO05D005563 1.3e-266 923.3 833 58.3
BcaB02g11154 Brassica carinata HOM05D003391 ORTHO05D005563 3.8e-266 921.8 830 58.3
AT1G50500 Arabidopsis thaliana HOM05D003391 ORTHO05D005563 1.1e-265 920.2 833 58.1
ECA240G2134 Erigeron canadensis HOM05D003391 ORTHO05D005563 1.9e-265 919.5 828 57.6
CSS0023421 Camellia sinensis var. sinensis HOM05D003391 ORTHO05D005563 2.5e-265 919.1 840 58.3
BcaC05g27411 Brassica carinata HOM05D003391 ORTHO05D005563 5.5e-265 917.9 830 58.2
Sp1g37350 Schrenkiella parvula HOM05D003391 ORTHO05D005563 9.4e-265 917.1 829 58.3
Sc24g0003350 Simmondsia chinensis HOM05D003391 ORTHO05D005563 1.8e-263 912.9 736 63.5
SGA_v2.0_scaffold62G21434 Striga asiatica HOM05D003391 ORTHO05D005563 4.0e-263 911.8 936 54.2
CBR_g35042 Chara braunii HOM05D003391 ORTHO05D005563 2.0e-262 909.4 826 60.0
FAN14G1902 Fragaria x ananassa HOM05D003391 ORTHO05D005563 3.1e-260 902.1 900 55.9
Peaxi162Scf00072g00087 Petunia axillaris HOM05D003391 ORTHO05D005563 4.1e-260 901.7 815 59.4
AUR62022296 Chenopodium quinoa HOM05D003391 ORTHO05D005563 2.7e-259 899.0 829 58.4
Duzib068G0467 Durio zibethinus HOM05D003391 ORTHO05D005563 1.7e-258 896.3 833 58.7
arahy.Tifrunner.gnm1.ann1.QTWQ8J Arachis hypogaea HOM05D003391 ORTHO05D005563 2.2e-258 896.0 779 61.6
Ca_11369_v3 Cicer arietinum L. HOM05D003391 ORTHO05D005563 3.8e-258 895.2 825 58.7
Ca_30786_v3 Cicer arietinum L. HOM05D003391 ORTHO05D005563 3.8e-258 895.2 825 58.7
BcaC01g01234 Brassica carinata HOM05D003391 ORTHO05D005563 8.5e-258 894.0 837 56.0
AUR62023891 Chenopodium quinoa HOM05D003391 ORTHO05D005563 1.5e-257 893.3 828 58.7
COL.COLO4_06714 Corchorus olitorius HOM05D003391 ORTHO05D005563 9.5e-257 890.6 822 59.1
Sabra16G0023000 Salix brachista HOM05D003391 ORTHO05D005563 1.7e-253 879.8 828 57.9
Sabra16G0029200 Salix brachista HOM05D003391 ORTHO05D005563 1.7e-253 879.8 828 57.9
Lsat_1_v5_gn_7_7561 Lactuca sativa HOM05D003391 ORTHO05D005563 2.4e-252 875.9 846 57.1
HanXRQChr03g0093781 Helianthus annuus HOM05D003391 ORTHO05D005563 5.9e-251 871.3 828 56.9
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 1.0e-250 870.5 806 58.8
DCAR_003077 Daucus carota HOM05D003391 ORTHO05D005563 1.7e-250 869.8 837 57.6
Nitab4.5_0007706g0020 Nicotiana tabacum HOM05D003391 ORTHO05D005563 1.5e-249 866.7 815 58.3
ClCG11G016680 Citrullus lanatus HOM05D003391 ORTHO05D005563 1.2e-248 863.6 815 57.9
Oeu033843.4 Olea europaea HOM05D003391 ORTHO05D005563 2.6e-246 855.9 857 55.7
Eucgr.L01917 Eucalyptus grandis HOM05D003391 ORTHO05D005563 4.4e-246 855.1 746 61.0
CDE02G0628 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 2.2e-245 852.8 681 65.2
Eucgr.G02677 Eucalyptus grandis HOM05D003391 ORTHO05D005563 1.8e-244 849.7 669 65.0
unitig_899.g14436 Utricularia gibba HOM05D003391 ORTHO05D005563 1.2e-232 810.4 816 54.5
CARHR040530 Cardamine hirsuta HOM05D003391 ORTHO05D005563 4.0e-231 805.4 687 60.7
AagrBONN_evm.TU.Sc2ySwM_228.283 Anthoceros agrestis HOM05D003391 ORTHO05D005563 3.4e-230 802.4 590 72.7
Haze_17876 Corylus avellana HOM05D003391 ORTHO05D005563 1.3e-229 800.4 858 53.3
Lalb_Chr15g0088521 Lupinus albus HOM05D003391 ORTHO05D005563 2.2e-229 799.7 711 59.6
C03p89680 Brassica napus HOM05D003391 ORTHO05D005563 1.4e-228 797.0 855 51.2
Atru.chr13.1440 Acer truncatum HOM05D003391 ORTHO05D005563 3.2e-228 795.8 828 54.1
Hund02122 Selenicereus undatus HOM05D003391 ORTHO05D005563 6.2e-224 781.6 786 56.5
Thhalv10011301m.g Eutrema salsugineum HOM05D003391 ORTHO05D005563 1.1e-223 780.8 649 61.2
BraA05t20918Z Brassica rapa HOM05D003391 ORTHO05D005563 3.4e-222 775.8 844 53.1
Ah.01g004390 Amaranthus hybridus HOM05D003391 ORTHO05D005563 2.9e-221 772.7 830 53.0
BolC5t32086H Brassica oleracea HOM05D003391 ORTHO05D005563 2.9e-221 772.7 844 52.6
Nitab4.5_0000575g0140 Nicotiana tabacum HOM05D003391 ORTHO05D005563 3.9e-218 762.3 803 54.0
Rhsim05G0168000 Rhododendron simsii HOM05D003391 ORTHO05D005563 3.6e-216 755.7 877 51.0
Lj7A654G26 Lonicera japonica HOM05D003391 ORTHO05D005563 5.2e-215 751.9 721 56.6
Oeu030440.3 Olea europaea HOM05D003391 ORTHO05D005563 1.6e-208 730.3 720 54.9
Actinidia37789 Actinidia chinensis HOM05D003391 ORTHO05D005563 1.3e-205 720.7 834 50.0
arahy.Tifrunner.gnm1.ann1.MM6MID Arachis hypogaea HOM05D003391 ORTHO05D005563 1.3e-189 667.5 843 47.9
Psat1g171000 Pisum sativum HOM05D003391 ORTHO05D005563 1.9e-188 663.7 544 61.9
PRCOL_00003915 Prasinoderma coloniale HOM05D003391 ORTHO05D005563 2.1e-179 633.6 756 47.2
Lsat_1_v5_gn_3_133361 Lactuca sativa HOM05D003391 ORTHO05D005563 2.7e-179 633.3 833 47.1
AL1G58810 Arabidopsis lyrata HOM05D003391 ORTHO05D005563 6.5e-173 612.1 739 47.2
AL1G58840 Arabidopsis lyrata HOM05D003391 ORTHO05D005563 1.0e-165 588.2 719 47.3
HPP92_006006 Vanilla planifolia HOM05D003391 ORTHO05D005563 4.5e-158 562.8 536 58.2
MCO12G450 Micromonas commoda HOM05D003391 ORTHO05D005563 1.6e-155 554.3 773 42.6
BcaB04g17246 Brassica carinata HOM05D003391 ORTHO05D005563 1.0e-149 535.0 644 48.0
Rhsim11G0087500 Rhododendron simsii HOM05D003391 ORTHO05D005563 1.9e-148 530.8 478 60.7
BolC3t21285H Brassica oleracea HOM05D003391 ORTHO05D005563 4.7e-147 526.2 846 40.1
Ciclev10029974m.g Citrus clementina HOM05D003391 ORTHO05D005563 1.8e-138 497.7 443 60.9
PGSC0003DMG402012873 Solanum tuberosum HOM05D003391 ORTHO05D005563 2.2e-128 464.2 419 58.2
PGSC0003DMG401012873 Solanum tuberosum HOM05D003391 ORTHO05D005563 3.9e-125 453.4 377 63.7
SHI21342 Sapria himalayana HOM05D003391 ORTHO05D005563 2.8e-123 447.2 448 54.9
Os01g0906200 Oryza sativa ssp. japonica HOM05D003391 ORTHO05D005563 9.8e-121 438.7 415 55.9
Ciclev10028552m.g Citrus clementina HOM05D003391 ORTHO05D005563 8.6e-117 425.6 387 56.8
Ca_00789_v3 Cicer arietinum L. HOM05D003391 ORTHO05D005563 7.3e-116 422.5 366 59.6
Cre06.g259600 Chlamydomonas reinhardtii HOM05D003391 ORTHO05D005563 9.5e-116 422.2 812 34.1
SEGI_14368 Sequoiadendron giganteum HOM05D003391 ORTHO05D005563 9.5e-108 395.6 255 78.8
Psat1g171680 Pisum sativum HOM05D003391 ORTHO05D005563 5.6e-84 316.6 233 70.8
AT1G50970 Arabidopsis thaliana HOM05D003391 ORTHO05D005563 9.6e-84 315.8 387 46.3
Cfa021970 Carpinus fangiana HOM05D003391 ORTHO05D125001 3.1e-74 284.3 768 29.7
SEGI_15776 Sequoiadendron giganteum HOM05D003391 ORTHO05D005563 2.3e-61 241.5 163 73.6
HPP92_006005 Vanilla planifolia HOM05D003391 ORTHO05D005563 6.7e-61 240.0 264 50.8
SHI21339 Sapria himalayana HOM05D003391 ORTHO05D005563 1.0e-53 216.1 311 42.4
Lsat_1_v5_gn_6_88940 Lactuca sativa HOM05D003391 ORTHO05D019401 6.7e-53 213.4 202 57.9
Lsat_1_v5_gn_8_87740 Lactuca sativa HOM05D003391 ORTHO05D019401 1.8e-50 205.3 201 58.2
SEGI_03483 Sequoiadendron giganteum HOM05D003391 ORTHO05D005563 7.0e-50 203.4 203 56.7
Dinv04581 Davidia involucrata HOM05D003391 ORTHO05D005563 3.6e-46 191.0 206 51.9
Actinidia03950 Actinidia chinensis HOM05D003391 ORTHO05D005563 2.0e-44 185.3 295 39.3
Atru.chr7.1997 Acer truncatum HOM05D003391 ORTHO05D019401 5.3e-42 177.2 215 50.7
SEGI_21663 Sequoiadendron giganteum HOM05D003391 ORTHO05D005563 8.8e-37 159.8 179 52.5
SEGI_30207 Sequoiadendron giganteum HOM05D003391 ORTHO05D005563 1.6e-33 149.1 99 69.7
Lalb_Chr15g0088511 Lupinus albus HOM05D003391 ORTHO05D019401 3.5e-33 147.9 115 67.8
SEGI_01209 Sequoiadendron giganteum HOM05D003391 ORTHO05D005563 1.7e-32 145.6 103 69.9
CARHR041020 Cardamine hirsuta HOM05D003391 ORTHO05D013251 1.4e-29 136.0 146 47.9
SEGI_03199 Sequoiadendron giganteum HOM05D003391 ORTHO05D019401 3.7e-27 127.9 92 73.9
CARHR040520 Cardamine hirsuta HOM05D003391 ORTHO05D005563 8.0e-22 110.2 163 41.1
CARHR183160 Cardamine hirsuta HOM05D003391 ORTHO05D019401 6.8e-21 107.1 126 52.4
MBI18_g28219_MAGBIO Magnolia biondii HOM05D003391 ORTHO05D005563 5.9e-17 94.0 218 33.9
Thhalv10012404m.g Eutrema salsugineum HOM05D003391 ORTHO05D005563 3.3e-15 88.2 148 39.9
RcHm_v2.0_Chr1g0364361 Rosa chinensis HOM05D003391 ORTHO05D005413 5.6e-15 87.4 98 50.0
Sp1g37750 Schrenkiella parvula HOM05D003391 ORTHO05D372635 1.6e-14 85.9 107 53.3
CAN.G5179.1 Capsicum annuum HOM05D003391 ORTHO05D005563 6.8e-13 80.5 165 36.4
CARHR292060 Cardamine hirsuta HOM05D003391 ORTHO05D019401 2.0e-12 79.0 51 82.4
Oeu063006.1 Olea europaea HOM05D001351 ORTHO05D001203 5.4e-10 70.9 70 52.9
arahy.Tifrunner.gnm1.ann1.MF7AUF Arachis hypogaea HOM05D003391 ORTHO05D008505 1.2e-09 69.7 45 68.9
Manes.07G058173 Manihot esculenta HOM05D003391 ORTHO05D250310 3.9e-08 64.7 88 51.1
Manes.12G128950 Manihot esculenta HOM05D003391 ORTHO05D249565 3.9e-08 64.7 88 51.1
Manes.13G081678 Manihot esculenta HOM05D003391 ORTHO05D250639 1.5e-07 62.8 88 51.1
ECA246G3223 Erigeron canadensis HOM05D001124 ORTHO05D001004 2.5e-07 62.0 46 71.7
SGA_v2.0_scaffold48G17900 Striga asiatica HOM05D003391 ORTHO05D013251 1.6e-06 59.3 176 30.7
A02p35070 Brassica napus HOM05D003391 ORTHO05D013251 4.7e-06 57.8 110 36.4


User provided reference genes

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