Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c22_5850 Physcomitrium patens HOM05D006776 ORTHO05D007603 9.7e-264 912.9 455 100.0
ATR0820G216 Amborella trichopoda HOM05D006776 ORTHO05D007603 5.9e-136 488.4 459 53.6
Migut.N02781 Erythranthe guttata HOM05D006776 ORTHO05D007603 5.9e-136 488.4 463 53.8
TAR376G1186 Trochodendron aralioides HOM05D006776 ORTHO05D007603 1.3e-135 487.3 459 53.4
Mapoly0043s0035 Marchantia polymorpha HOM05D006776 ORTHO05D007603 1.6e-133 480.3 462 52.8
PSO017G0681 Papaver somniferum HOM05D006776 ORTHO05D007603 1.6e-133 480.3 461 52.1
FvH4_2g33100 Fragaria vesca HOM05D006776 ORTHO05D007603 2.1e-133 479.9 458 52.6
Nn1g04555 Nelumbo nucifera HOM05D006776 ORTHO05D007603 2.7e-133 479.6 457 52.3
FAN24G3456 Fragaria x ananassa HOM05D006776 ORTHO05D007603 1.4e-132 477.2 458 52.2
CANSAT21G2159 Cannabis sativa HOM05D006776 ORTHO05D007603 2.3e-132 476.5 460 53.5
PSO170G0170 Papaver somniferum HOM05D006776 ORTHO05D007603 3.0e-132 476.1 461 51.8
FAN20G0940 Fragaria x ananassa HOM05D006776 ORTHO05D007603 5.2e-132 475.3 458 51.7
RcHm_v2.0_Chr6g0309581 Rosa chinensis HOM05D006776 ORTHO05D007603 6.7e-132 474.9 458 52.6
Cc10_g05780 Coffea canephora HOM05D006776 ORTHO05D007603 1.2e-131 474.2 461 52.5
Lsat_1_v5_gn_4_131640 Lactuca sativa HOM05D006776 ORTHO05D007603 1.2e-131 474.2 459 52.7
MD15G1070100 Malus domestica HOM05D006776 ORTHO05D007603 1.2e-131 474.2 459 51.4
Dinv39223 Davidia involucrata HOM05D006776 ORTHO05D007603 1.5e-131 473.8 461 51.6
FAN27G1522 Fragaria x ananassa HOM05D006776 ORTHO05D007603 1.5e-131 473.8 458 51.7
FAN15G0723 Fragaria x ananassa HOM05D006776 ORTHO05D007603 2.0e-131 473.4 458 51.7
Oeu053611.1 Olea europaea HOM05D006776 ORTHO05D007603 4.4e-131 472.2 461 50.8
Rhsim07G0219900 Rhododendron simsii HOM05D006776 ORTHO05D007603 4.4e-131 472.2 461 51.8
Aqoxy5G00870 Aquilegia oxysepala HOM05D006776 ORTHO05D007603 7.5e-131 471.5 457 52.1
Thecc.08G088800 Theobroma cacao HOM05D006776 ORTHO05D007603 1.3e-130 470.7 459 51.0
CsaV3_2G026140 Cucumis sativus L. HOM05D006776 ORTHO05D007603 1.7e-130 470.3 458 51.1
PGSC0003DMG400011544 Solanum tuberosum HOM05D006776 ORTHO05D007603 1.7e-130 470.3 458 50.9
Sopen12g030330 Solanum pennellii HOM05D006776 ORTHO05D007603 2.8e-130 469.5 458 50.9
COL.COLO4_28506 Corchorus olitorius HOM05D006776 ORTHO05D007603 4.8e-130 468.8 459 51.2
Solyc12g088340.2 Solanum lycopersicum HOM05D006776 ORTHO05D007603 1.1e-129 467.6 458 50.9
Manes.05G181900 Manihot esculenta HOM05D006776 ORTHO05D007603 1.4e-129 467.2 460 50.7
Actinidia08248 Actinidia chinensis HOM05D006776 ORTHO05D007603 1.8e-129 466.8 461 51.0
Prupe.1G422900 Prunus persica HOM05D006776 ORTHO05D007603 1.8e-129 466.8 457 51.6
Nitab4.5_0008551g0030 Nicotiana tabacum HOM05D006776 ORTHO05D007603 4.1e-129 465.7 436 52.3
Atru.chr13.832 Acer truncatum HOM05D006776 ORTHO05D007603 5.3e-129 465.3 441 50.8
Hma1.2p1_0819F.1_g223710 Hydrangea macrophylla HOM05D006776 ORTHO05D007603 7.0e-129 464.9 437 52.4
AagrBONN_evm.TU.Sc2ySwM_228.2971 Anthoceros agrestis HOM05D006776 ORTHO05D007603 9.1e-129 464.5 455 52.5
Gohir.D05G213300 Gossypium hirsutum HOM05D006776 ORTHO05D007603 9.1e-129 464.5 463 50.3
HanXRQChr09g0266761 Helianthus annuus HOM05D006776 ORTHO05D007603 9.1e-129 464.5 462 50.4
Cpa.g.sc142.25 Carica papaya HOM05D006776 ORTHO05D007603 1.2e-128 464.2 434 51.2
MELO3C010806.2 Cucumis melo HOM05D006776 ORTHO05D007603 1.2e-128 464.2 464 50.6
Nitab4.5_0002314g0100 Nicotiana tabacum HOM05D006776 ORTHO05D007603 1.2e-128 464.2 458 50.4
PGR083G0271 Punica granatum HOM05D006776 ORTHO05D007603 1.6e-128 463.8 458 50.4
Glyma.04G045700 Glycine max HOM05D006776 ORTHO05D007603 2.0e-128 463.4 461 49.9
Lj1g0026753 Lotus japonicus HOM05D006776 ORTHO05D007603 2.0e-128 463.4 457 49.7
MSTRG.22221 Avicennia marina HOM05D006776 ORTHO05D007603 2.7e-128 463.0 458 51.3
CiPaw.07G175000 Carya illinoinensis HOM05D006776 ORTHO05D007603 4.5e-128 462.2 455 50.5
Gohir.A05G210000 Gossypium hirsutum HOM05D006776 ORTHO05D007603 4.5e-128 462.2 463 50.1
Hund23872 Selenicereus undatus HOM05D006776 ORTHO05D007603 4.5e-128 462.2 458 50.4
ECA232G1156 Erigeron canadensis HOM05D006776 ORTHO05D007603 5.9e-128 461.8 459 50.1
Glyma.06G046400 Glycine max HOM05D006776 ORTHO05D007603 5.9e-128 461.8 457 49.9
arahy.Tifrunner.gnm1.ann1.YEFH3D Arachis hypogaea HOM05D006776 ORTHO05D007603 2.2e-127 459.9 458 50.2
Ciclev10001152m.g Citrus clementina HOM05D006776 ORTHO05D007603 2.9e-127 459.5 458 49.3
Ca_15900_v3 Cicer arietinum L. HOM05D006776 ORTHO05D007603 3.8e-127 459.1 455 49.9
AT1G27840 Arabidopsis thaliana HOM05D006776 ORTHO05D007603 5.0e-127 458.8 458 50.9
Medtr3g103170 Medicago truncatula HOM05D006776 ORTHO05D007603 5.0e-127 458.8 456 49.8
Psat5g038960 Pisum sativum HOM05D006776 ORTHO05D007603 5.0e-127 458.8 462 50.0
Phvul.009G071700 Phaseolus vulgaris HOM05D006776 ORTHO05D007603 6.5e-127 458.4 459 49.9
Sed0026542 Sechium edule HOM05D006776 ORTHO05D007603 6.5e-127 458.4 434 51.4
GSVIVG01009344001 Vitis vinifera HOM05D006776 ORTHO05D007603 6.5e-127 458.4 461 49.9
CSS0038791 Camellia sinensis var. sinensis HOM05D006776 ORTHO05D007603 1.1e-126 457.6 464 49.8
CDE04G2973 Ceratophyllum demersum HOM05D006776 ORTHO05D007603 1.1e-126 457.6 458 50.9
ClCG08G016470 Citrullus lanatus HOM05D006776 ORTHO05D007603 1.5e-126 457.2 443 50.6
Eucgr.F00083 Eucalyptus grandis HOM05D006776 ORTHO05D007603 3.2e-126 456.1 458 50.0
EL10Ac1g02384 Beta vulgaris HOM05D006776 ORTHO05D007603 4.2e-126 455.7 460 49.6
VMungo1309G0963 Vigna mungo HOM05D006776 ORTHO05D007603 4.2e-126 455.7 457 49.7
arahy.Tifrunner.gnm1.ann1.SBJ000 Arachis hypogaea HOM05D006776 ORTHO05D007603 5.5e-126 455.3 455 49.9
Potri.014G016100 Populus trichocarpa HOM05D006776 ORTHO05D007603 9.4e-126 454.5 462 49.1
TPR.G33723 Trifolium pratense HOM05D006776 ORTHO05D007603 9.4e-126 454.5 456 49.3
SGA_v2.0_scaffold152G36804 Striga asiatica HOM05D006776 ORTHO05D007603 1.2e-125 454.1 517 47.4
AL1G41330 Arabidopsis lyrata HOM05D006776 ORTHO05D007603 4.7e-125 452.2 458 50.4
Ah.11g042830 Amaranthus hybridus HOM05D006776 ORTHO05D007603 6.1e-125 451.8 459 49.0
A09p38320 Brassica napus HOM05D006776 ORTHO05D007603 1.8e-124 450.3 458 49.8
CARHR027300 Cardamine hirsuta HOM05D006776 ORTHO05D007603 1.8e-124 450.3 459 49.5
BraA09t39342Z Brassica rapa HOM05D006776 ORTHO05D007603 2.3e-124 449.9 459 50.3
TWI56G0429 Tripterygium wilfordii HOM05D006776 ORTHO05D007603 3.0e-124 449.5 456 49.3
QL12p038088 Quercus lobata HOM05D006776 ORTHO05D007603 6.8e-124 448.4 494 47.0
SMO203G0215 Selaginella moellendorffii HOM05D006776 ORTHO05D007603 6.8e-124 448.4 455 52.5
THA.LOC104814190 Tarenaya hassleriana HOM05D006776 ORTHO05D007603 3.4e-123 446.0 465 48.0
HPP92_001976 Vanilla planifolia HOM05D006776 ORTHO05D007603 5.7e-123 445.3 463 50.3
Sp1g24040 Schrenkiella parvula HOM05D006776 ORTHO05D007603 7.5e-123 444.9 457 49.5
Lalb_Chr11g0062871 Lupinus albus HOM05D006776 ORTHO05D007603 1.3e-122 444.1 456 49.1
unitig_578.g16149 Utricularia gibba HOM05D006776 ORTHO05D007603 1.3e-122 444.1 458 48.7
Zm00001eb147340 Zea mays HOM05D006776 ORTHO05D007603 1.3e-122 444.1 462 49.6
Cfa013778 Carpinus fangiana HOM05D006776 ORTHO05D007603 1.7e-122 443.7 455 48.6
DCAR_012816 Daucus carota HOM05D006776 ORTHO05D007603 1.7e-122 443.7 462 50.6
C05p26470 Brassica napus HOM05D006776 ORTHO05D007603 6.3e-122 441.8 458 48.9
BcaNung06155 Brassica carinata HOM05D006776 ORTHO05D007603 1.8e-121 440.3 458 49.6
BolC5t31368H Brassica oleracea HOM05D006776 ORTHO05D007603 1.6e-120 437.2 462 48.3
Lj4A758G74 Lonicera japonica HOM05D006776 ORTHO05D007603 3.3e-118 429.5 418 49.8
Peaxi162Scf00160g00527 Petunia axillaris HOM05D006776 ORTHO05D007603 2.1e-117 426.8 437 50.3
Sabra14G0010000 Salix brachista HOM05D006776 ORTHO05D007603 3.6e-117 426.0 462 47.6
Sc15g0005690 Simmondsia chinensis HOM05D006776 ORTHO05D007603 1.0e-116 424.5 443 49.7
Gorai.009G219900 Gossypium raimondii HOM05D006776 ORTHO05D007603 3.0e-116 422.9 417 50.1
Aa31sc113G60 Aethionema arabicum HOM05D006776 ORTHO05D007603 3.4e-115 419.5 491 46.6
Haze_22436 Corylus avellana HOM05D006776 ORTHO05D007603 5.7e-115 418.7 406 51.0
Thhalv10007615m.g Eutrema salsugineum HOM05D006776 ORTHO05D007603 1.3e-114 417.5 457 47.0
BcaNung06153 Brassica carinata HOM05D006776 ORTHO05D007603 3.7e-114 416.0 456 47.4
Hma1.2p1_0819F.1_g223700 Hydrangea macrophylla HOM05D006776 ORTHO05D007603 8.0e-109 398.3 387 51.4
AUR62038776 Chenopodium quinoa HOM05D006776 ORTHO05D007603 1.0e-108 397.9 407 50.4
Duzib116G0586 Durio zibethinus HOM05D006776 ORTHO05D007603 5.8e-107 392.1 378 51.1
CBR_g4873 Chara braunii HOM05D006776 ORTHO05D007603 1.1e-102 377.9 523 40.2
SMO353G0131 Selaginella moellendorffii HOM05D006776 ORTHO05D007603 1.7e-98 364.0 462 47.0
vmacro22055 Vaccinium macrocarpon HOM05D006776 ORTHO05D007603 1.7e-98 364.0 376 50.0
AT1G19750 Arabidopsis thaliana HOM05D006776 ORTHO05D007603 9.2e-89 331.6 345 50.4
BcaC05g26777 Brassica carinata HOM05D006776 ORTHO05D007603 1.7e-82 310.8 462 41.6
MD08G1082700 Malus domestica HOM05D006776 ORTHO05D007603 9.2e-81 305.1 371 45.3
Carub.0001s2630 Capsella rubella HOM05D006776 ORTHO05D007603 4.6e-80 302.8 318 50.3
AUR62037473 Chenopodium quinoa HOM05D006776 ORTHO05D007603 5.1e-79 299.3 286 52.4
CDE02G3909 Ceratophyllum demersum HOM05D006776 ORTHO05D007603 1.1e-78 298.1 384 41.4
MCO02G266 Micromonas commoda HOM05D006776 ORTHO05D007603 3.4e-75 286.6 447 38.5
SEGI_38356 Sequoiadendron giganteum HOM05D006776 ORTHO05D007603 2.7e-64 250.4 225 53.3
SEGI_36074 Sequoiadendron giganteum HOM05D006776 ORTHO05D007603 2.5e-57 227.3 223 52.9
Os02g0307200 Oryza sativa ssp. japonica HOM05D006776 ORTHO05D007603 1.6e-48 198.0 191 50.8
MD08G1084000 Malus domestica HOM05D006776 ORTHO05D007603 2.7e-48 197.2 238 47.9
Cre01.g032100 Chlamydomonas reinhardtii HOM05D006776 ORTHO05D007603 2.9e-42 177.2 278 38.5
PRCOL_00002749 Prasinoderma coloniale HOM05D006776 ORTHO05D007603 1.9e-41 174.5 497 29.8
Lsat_1_v5_gn_7_88960 Lactuca sativa HOM05D006776 ORTHO05D007603 1.7e-21 108.2 107 49.5
Cre01.g032139 Chlamydomonas reinhardtii HOM05D006776 ORTHO05D007603 4.7e-16 90.1 123 37.4
Glyma.12G033100 Glycine max HOM05D000347 ORTHO05D001997 5.5e-09 66.6 172 27.9
Oeu016768.1 Olea europaea HOM05D002302 ORTHO05D002728 3.6e-08 63.9 177 26.0
SHI26778 Sapria himalayana HOM05D006183 ORTHO05D007844 4.7e-08 63.5 140 25.7
Glyma.13G107300 Glycine max HOM05D005151 ORTHO05D006322 2.3e-07 61.2 129 28.7
Cfa003042 Carpinus fangiana HOM05D005151 ORTHO05D006322 4.0e-07 60.5 129 28.7
Psat5g117120 Pisum sativum HOM05D000464 ORTHO05D006292 4.0e-07 60.5 322 21.1
Sp2g20380 Schrenkiella parvula HOM05D000792 ORTHO05D004195 4.0e-07 60.5 269 26.8
VMungo0464G1091 Vigna mungo HOM05D002288 ORTHO05D002894 4.0e-07 60.5 340 23.2
Peaxi162Scf00362g00643 Petunia axillaris HOM05D000347 ORTHO05D001997 5.2e-07 60.1 169 25.4
unitig_21.g20261 Utricularia gibba HOM05D002302 ORTHO05D002728 5.2e-07 60.1 176 26.1
Cc04_g10820 Coffea canephora HOM05D000464 ORTHO05D006292 6.8e-07 59.7 364 20.9
MELO3C026239.2 Cucumis melo HOM05D000464 ORTHO05D006292 6.8e-07 59.7 362 21.8
CsaV3_1G000870 Cucumis sativus L. HOM05D000464 ORTHO05D006292 6.8e-07 59.7 362 21.8
Lalb_Chr20g0121511 Lupinus albus HOM05D003913 ORTHO05D004803 6.8e-07 59.7 179 26.8
QL02p061718 Quercus lobata HOM05D005151 ORTHO05D006322 6.8e-07 59.7 155 27.1
A07p37990 Brassica napus HOM05D003913 ORTHO05D004803 8.8e-07 59.3 184 26.6
Cpa.g.sc1360.1 Carica papaya HOM05D000464 ORTHO05D000408 8.8e-07 59.3 157 23.6
COL.COLO4_04956 Corchorus olitorius HOM05D000464 ORTHO05D006292 8.8e-07 59.3 153 22.9
MELO3C015499.2 Cucumis melo HOM05D005151 ORTHO05D006322 8.8e-07 59.3 129 27.9
Migut.D02035 Erythranthe guttata HOM05D000464 ORTHO05D006292 1.2e-06 58.9 366 21.6
HanXRQChr04g0100971 Helianthus annuus HOM05D000464 ORTHO05D006292 1.2e-06 58.9 360 20.3
SGA_v2.0_scaffold7G04174 Striga asiatica HOM05D000464 ORTHO05D006292 1.2e-06 58.9 360 22.2
THA.LOC104821692 Tarenaya hassleriana HOM05D000792 ORTHO05D004195 1.2e-06 58.9 234 25.6
TAR629G1181 Trochodendron aralioides HOM05D000464 ORTHO05D006292 1.5e-06 58.5 360 21.7
BcaC05g29993 Brassica carinata HOM05D000792 ORTHO05D004195 2.0e-06 58.2 231 26.0
C06p35320 Brassica napus HOM05D003913 ORTHO05D004803 2.0e-06 58.2 184 26.1
BolC6t38638H Brassica oleracea HOM05D003913 ORTHO05D004803 2.0e-06 58.2 184 26.1
FAN14G0951 Fragaria x ananassa HOM05D000792 ORTHO05D004195 2.0e-06 58.2 249 25.7
BraA07t30691Z Brassica rapa HOM05D003913 ORTHO05D004803 2.6e-06 57.8 184 26.6
Dinv26878 Davidia involucrata HOM05D002634 ORTHO05D003100 2.6e-06 57.8 358 20.4
Thhalv10020130m.g Eutrema salsugineum HOM05D000792 ORTHO05D004195 3.4e-06 57.4 232 27.2
SGA_v2.0_scaffold21G09385 Striga asiatica HOM05D002302 ORTHO05D002728 3.4e-06 57.4 206 23.8
Ah.06g192810 Amaranthus hybridus HOM05D000792 ORTHO05D004195 4.4e-06 57.0 225 25.8
AT3G05090 Arabidopsis thaliana HOM05D000792 ORTHO05D004195 4.4e-06 57.0 232 26.7
A07p30560 Brassica napus HOM05D003913 ORTHO05D004803 4.4e-06 57.0 184 26.1
C05p62150 Brassica napus HOM05D000792 ORTHO05D004195 4.4e-06 57.0 231 26.0
BolC5t34873H Brassica oleracea HOM05D000792 ORTHO05D004195 4.4e-06 57.0 231 26.0
Carub.0003s0433 Capsella rubella HOM05D000792 ORTHO05D004195 4.4e-06 57.0 232 25.4
Phvul.006G097800 Phaseolus vulgaris HOM05D000792 ORTHO05D004195 4.4e-06 57.0 256 23.8
AL3G15470 Arabidopsis lyrata HOM05D000792 ORTHO05D004195 7.5e-06 56.2 232 25.0
CARHR079410 Cardamine hirsuta HOM05D000792 ORTHO05D004195 7.5e-06 56.2 232 26.7
MBI10_g14637_MAGBIO Magnolia biondii HOM05D000464 ORTHO05D006292 7.5e-06 56.2 118 28.0
Oeu050775.1 Olea europaea HOM05D000792 ORTHO05D004195 7.5e-06 56.2 249 24.5
PRCOL_00001929 Prasinoderma coloniale HOM05D005961 ORTHO05D034408 7.5e-06 56.2 205 23.4
SEGI_15664 Sequoiadendron giganteum HOM05D003769 ORTHO05D004521 7.5e-06 56.2 157 24.2
BolC6t39643H Brassica oleracea HOM05D003913 ORTHO05D004803 9.8e-06 55.8 124 31.5
FAN07G2584 Fragaria x ananassa HOM05D000002 ORTHO05D006339 9.8e-06 55.8 163 22.7


User provided reference genes

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