Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c16_5930 Physcomitrium patens HOM05D003335 ORTHO05D003853 4.0e-131 471.5 243 100.0
Pp3c5_9900 Physcomitrium patens HOM05D003335 ORTHO05D003853 2.2e-60 236.5 246 56.5
Pp3c6_19920 Physcomitrium patens HOM05D003335 ORTHO05D003853 1.5e-58 230.3 246 55.3
Mapoly0157s0021 Marchantia polymorpha HOM05D003335 ORTHO05D003853 2.0e-45 186.8 245 46.1
Mapoly0157s0022 Marchantia polymorpha HOM05D003335 ORTHO05D003853 2.0e-45 186.8 245 46.1
AagrBONN_evm.TU.Sc2ySwM_344.1571 Anthoceros agrestis HOM05D003335 ORTHO05D003853 2.4e-43 179.9 246 45.5
ATR0787G209 Amborella trichopoda HOM05D003335 ORTHO05D003853 5.0e-41 172.2 246 43.9
Lj3A648G42 Lonicera japonica HOM05D003335 ORTHO05D003853 2.1e-39 166.8 246 41.5
TAR636G0037 Trochodendron aralioides HOM05D003335 ORTHO05D003853 6.1e-39 165.2 245 41.2
HanXRQChr01g0022981 Helianthus annuus HOM05D003335 ORTHO05D003853 4.0e-38 162.5 246 41.5
Hund27519 Selenicereus undatus HOM05D003335 ORTHO05D003853 4.0e-38 162.5 247 39.7
Hund27526 Selenicereus undatus HOM05D003335 ORTHO05D003853 4.0e-38 162.5 247 39.7
CDE08G0175 Ceratophyllum demersum HOM05D003335 ORTHO05D003853 5.2e-38 162.2 246 41.9
Solyc09g090660.3 Solanum lycopersicum HOM05D003335 ORTHO05D003853 8.8e-38 161.4 246 41.9
Sopen09g033600 Solanum pennellii HOM05D003335 ORTHO05D003853 1.2e-37 161.0 246 41.9
Hma1.2p1_0112F.1_g054690 Hydrangea macrophylla HOM05D003335 ORTHO05D003853 1.5e-37 160.6 246 41.5
Nn7g38170 Nelumbo nucifera HOM05D003335 ORTHO05D003853 1.5e-37 160.6 246 41.5
PGSC0003DMG400017196 Solanum tuberosum HOM05D003335 ORTHO05D003853 1.5e-37 160.6 246 42.7
arahy.Tifrunner.gnm1.ann1.0Y6UED Arachis hypogaea HOM05D003335 ORTHO05D003853 2.0e-37 160.2 246 42.3
arahy.Tifrunner.gnm1.ann1.3R4EAX Arachis hypogaea HOM05D003335 ORTHO05D003853 2.0e-37 160.2 246 42.3
CiPaw.01G178600 Carya illinoinensis HOM05D003335 ORTHO05D003853 2.0e-37 160.2 246 40.2
Lsat_1_v5_gn_1_75641 Lactuca sativa HOM05D003335 ORTHO05D003853 2.0e-37 160.2 246 41.1
Lalb_Chr19g0128501 Lupinus albus HOM05D003335 ORTHO05D003853 2.6e-37 159.8 246 40.2
GSVIVG01027911001 Vitis vinifera HOM05D003335 ORTHO05D003853 2.6e-37 159.8 246 41.9
Glyma.10G133700 Glycine max HOM05D003335 ORTHO05D003853 3.4e-37 159.5 246 41.1
Gorai.005G053600 Gossypium raimondii HOM05D003335 ORTHO05D003853 3.4e-37 159.5 246 42.3
Nitab4.5_0000194g0280 Nicotiana tabacum HOM05D003335 ORTHO05D003853 3.4e-37 159.5 246 41.9
Haze_11454 Corylus avellana HOM05D003335 ORTHO05D003853 4.4e-37 159.1 246 41.1
Nitab4.5_0002751g0050 Nicotiana tabacum HOM05D003335 ORTHO05D003853 4.4e-37 159.1 257 40.5
Dinv27109 Davidia involucrata HOM05D003335 ORTHO05D003853 5.7e-37 158.7 246 41.1
PGR004G0877 Punica granatum HOM05D003335 ORTHO05D003853 5.7e-37 158.7 246 40.7
TAR365G0561 Trochodendron aralioides HOM05D003335 ORTHO05D003853 5.7e-37 158.7 246 41.9
Ciclev10004724m.g Citrus clementina HOM05D003335 ORTHO05D003853 1.3e-36 157.5 246 41.5
Glyma.20G084500 Glycine max HOM05D003335 ORTHO05D003853 1.3e-36 157.5 246 40.7
HanXRQChr11g0342461 Helianthus annuus HOM05D003335 ORTHO05D003853 1.3e-36 157.5 246 39.8
Dinv29806 Davidia involucrata HOM05D003335 ORTHO05D003853 1.7e-36 157.1 246 40.2
Gohir.D02G048300 Gossypium hirsutum HOM05D003335 ORTHO05D003853 1.7e-36 157.1 246 41.9
Gorai.006G251300 Gossypium raimondii HOM05D003335 ORTHO05D003853 2.2e-36 156.8 246 40.2
SMO367G1087 Selaginella moellendorffii HOM05D003335 ORTHO05D003853 2.2e-36 156.8 246 40.2
Peaxi162Scf00153g01716 Petunia axillaris HOM05D003335 ORTHO05D003853 2.8e-36 156.4 246 41.5
vmacro15476 Vaccinium macrocarpon HOM05D003335 ORTHO05D003853 2.8e-36 156.4 242 41.3
Aqoxy2G03744 Aquilegia oxysepala HOM05D003335 ORTHO05D003853 4.8e-36 155.6 246 41.9
Potri.008G171600 Populus trichocarpa HOM05D003335 ORTHO05D003853 4.8e-36 155.6 246 38.6
Gohir.A02G042700 Gossypium hirsutum HOM05D003335 ORTHO05D003853 6.3e-36 155.2 246 41.1
Gohir.D09G228600 Gossypium hirsutum HOM05D003335 ORTHO05D003853 6.3e-36 155.2 246 40.2
Thecc.04G263400 Theobroma cacao HOM05D003335 ORTHO05D003853 6.3e-36 155.2 246 41.1
Atru.chr4.1923 Acer truncatum HOM05D003335 ORTHO05D003853 8.3e-36 154.8 247 40.5
BraA08t35589Z Brassica rapa HOM05D003335 ORTHO05D003853 8.3e-36 154.8 220 42.7
CBR_g32473 Chara braunii HOM05D003335 ORTHO05D003853 8.3e-36 154.8 246 41.5
Gohir.A09G227600 Gossypium hirsutum HOM05D003335 ORTHO05D003853 8.3e-36 154.8 246 40.2
TAR362G1317 Trochodendron aralioides HOM05D003335 ORTHO05D003853 1.1e-35 154.5 246 40.2
EL10Ac3g04947 Beta vulgaris HOM05D003335 ORTHO05D003853 1.4e-35 154.1 244 39.3
CiPaw.02G107400 Carya illinoinensis HOM05D003335 ORTHO05D003853 1.4e-35 154.1 246 39.4
VMungo0720G1182 Vigna mungo HOM05D003335 ORTHO05D003853 2.4e-35 153.3 246 39.8
MSTRG.9861 Avicennia marina HOM05D003335 ORTHO05D003853 3.1e-35 152.9 246 39.4
Sabra10G0041200 Salix brachista HOM05D003335 ORTHO05D003853 3.1e-35 152.9 246 38.6
CSS0033617 Camellia sinensis var. sinensis HOM05D003335 ORTHO05D003853 4.1e-35 152.5 256 38.3
COL.COLO4_15958 Corchorus olitorius HOM05D003335 ORTHO05D003853 4.1e-35 152.5 246 39.8
Nitab4.5_0011782g0010 Nicotiana tabacum HOM05D003335 ORTHO05D003853 4.1e-35 152.5 246 40.2
QL06p020925 Quercus lobata HOM05D003335 ORTHO05D003853 4.1e-35 152.5 246 40.7
Sabra08G0131000 Salix brachista HOM05D003335 ORTHO05D003853 4.1e-35 152.5 246 37.8
Sp1g03340 Schrenkiella parvula HOM05D003335 ORTHO05D003853 4.1e-35 152.5 246 39.8
THA.LOC104801067 Tarenaya hassleriana HOM05D003335 ORTHO05D003853 4.1e-35 152.5 246 40.2
MELO3C006381.2 Cucumis melo HOM05D003335 ORTHO05D003853 5.3e-35 152.1 246 41.5
ECA248G3697 Erigeron canadensis HOM05D003335 ORTHO05D003853 5.3e-35 152.1 246 40.2
Cc03_g06250 Coffea canephora HOM05D003335 ORTHO05D003853 7.0e-35 151.8 248 39.9
Manes.15G045400 Manihot esculenta HOM05D003335 ORTHO05D003853 7.0e-35 151.8 246 38.2
Phvul.007G270500 Phaseolus vulgaris HOM05D003335 ORTHO05D003853 7.0e-35 151.8 246 39.8
SHI00771 Sapria himalayana HOM05D003335 ORTHO05D003853 7.0e-35 151.8 245 40.4
Gohir.D01G023421 Gossypium hirsutum HOM05D003335 ORTHO05D003853 9.1e-35 151.4 246 40.2
Gorai.002G026500 Gossypium raimondii HOM05D003335 ORTHO05D003853 9.1e-35 151.4 246 40.2
Manes.03G159500 Manihot esculenta HOM05D003335 ORTHO05D003853 9.1e-35 151.4 246 39.0
TWI73G0008 Tripterygium wilfordii HOM05D003335 ORTHO05D003853 9.1e-35 151.4 247 38.1
AL1G14160 Arabidopsis lyrata HOM05D003335 ORTHO05D003853 1.2e-34 151.0 247 38.9
CSS0025065 Camellia sinensis var. sinensis HOM05D003335 ORTHO05D003853 1.2e-34 151.0 246 38.2
Duzib151G0619 Durio zibethinus HOM05D003335 ORTHO05D003853 1.2e-34 151.0 246 39.0
SalBow3G1035 Salvia bowleyana HOM05D003335 ORTHO05D003853 1.2e-34 151.0 246 38.6
BcaB06g28676 Brassica carinata HOM05D003335 ORTHO05D003853 1.6e-34 150.6 246 39.8
AUR62035089 Chenopodium quinoa HOM05D003335 ORTHO05D003853 1.6e-34 150.6 247 39.3
Ca_11904_v3 Cicer arietinum L. HOM05D003335 ORTHO05D003853 1.6e-34 150.6 246 38.6
Ca_11905_v3 Cicer arietinum L. HOM05D003335 ORTHO05D003853 1.6e-34 150.6 246 38.6
ClCG05G004030 Citrullus lanatus HOM05D003335 ORTHO05D003853 1.6e-34 150.6 246 40.7
TPR.G24009 Trifolium pratense HOM05D003335 ORTHO05D003853 1.6e-34 150.6 246 38.6
Ah.04g155250 Amaranthus hybridus HOM05D003335 ORTHO05D003853 2.0e-34 150.2 246 37.8
DCAR_027345 Daucus carota HOM05D003335 ORTHO05D003853 2.0e-34 150.2 246 41.5
Thhalv10016510m.g Eutrema salsugineum HOM05D003335 ORTHO05D003853 2.0e-34 150.2 246 39.8
Lj6g0012574 Lotus japonicus HOM05D003335 ORTHO05D003853 2.0e-34 150.2 246 40.7
Medtr1g044720 Medicago truncatula HOM05D003335 ORTHO05D003853 2.0e-34 150.2 244 38.1
BraA04t18067Z Brassica rapa HOM05D003335 ORTHO05D003853 3.5e-34 149.4 245 39.2
Carub.0004s1496 Capsella rubella HOM05D003335 ORTHO05D003853 3.5e-34 149.4 246 39.4
Psat6g109160 Pisum sativum HOM05D003335 ORTHO05D003853 3.5e-34 149.4 246 37.8
Sp4g15650 Schrenkiella parvula HOM05D003335 ORTHO05D003853 3.5e-34 149.4 246 38.6
AT1G04510 Arabidopsis thaliana HOM05D003335 ORTHO05D003853 4.5e-34 149.1 247 38.5
A08p36890 Brassica napus HOM05D003335 ORTHO05D003853 4.5e-34 149.1 246 39.0
MBI10_g35441_MAGBIO Magnolia biondii HOM05D003335 ORTHO05D003853 4.5e-34 149.1 275 37.1
Sc25g0003550 Simmondsia chinensis HOM05D003335 ORTHO05D003853 4.5e-34 149.1 246 39.0
Migut.G00547 Erythranthe guttata HOM05D003335 ORTHO05D003853 5.9e-34 148.7 246 38.6
Potri.010G066000 Populus trichocarpa HOM05D003335 ORTHO05D003853 5.9e-34 148.7 246 36.6
TWI53G0185 Tripterygium wilfordii HOM05D003335 ORTHO05D003853 5.9e-34 148.7 246 38.6
RcHm_v2.0_Chr4g0395291 Rosa chinensis HOM05D003335 ORTHO05D003853 7.7e-34 148.3 247 36.8
TWI09G1478 Tripterygium wilfordii HOM05D003335 ORTHO05D003853 7.7e-34 148.3 248 38.7
A04p25630 Brassica napus HOM05D003335 ORTHO05D003853 1.0e-33 147.9 245 38.8
C04p62760 Brassica napus HOM05D003335 ORTHO05D003853 1.0e-33 147.9 246 38.2
Oeu011224.1 Olea europaea HOM05D003335 ORTHO05D003853 1.0e-33 147.9 246 38.6
BcaC02g07839 Brassica carinata HOM05D003335 ORTHO05D003853 1.7e-33 147.1 246 38.2
CANSAT78G1065 Cannabis sativa HOM05D003335 ORTHO05D003853 1.7e-33 147.1 246 38.6
Gohir.A01G025900 Gossypium hirsutum HOM05D003335 ORTHO05D003853 1.7e-33 147.1 246 39.4
Actinidia20838 Actinidia chinensis HOM05D003335 ORTHO05D003853 2.2e-33 146.7 249 38.6
CARHR003850 Cardamine hirsuta HOM05D003335 ORTHO05D003853 2.2e-33 146.7 247 38.1
Sed0002911 Sechium edule HOM05D003335 ORTHO05D003853 2.9e-33 146.4 246 41.9
Sed0027455 Sechium edule HOM05D003335 ORTHO05D003853 2.9e-33 146.4 246 41.1
Aa31LG1G20360 Aethionema arabicum HOM05D003335 ORTHO05D003853 3.8e-33 146.0 245 38.4
PSO764G0342 Papaver somniferum HOM05D003335 ORTHO05D003853 3.8e-33 146.0 246 38.6
Lalb_Chr01g0020321 Lupinus albus HOM05D003335 ORTHO05D003853 5.0e-33 145.6 246 38.2
PSO832G0093 Papaver somniferum HOM05D003335 ORTHO05D003853 5.0e-33 145.6 246 38.6
CARHR127340 Cardamine hirsuta HOM05D003335 ORTHO05D003853 6.5e-33 145.2 246 39.4
Duzib052G0269 Durio zibethinus HOM05D003335 ORTHO05D003853 6.5e-33 145.2 246 39.0
FAN12G3742 Fragaria x ananassa HOM05D003335 ORTHO05D003853 6.5e-33 145.2 246 36.2
Zm00001eb222190 Zea mays HOM05D003335 ORTHO05D003853 6.5e-33 145.2 246 38.6
Carub.0001s0372 Capsella rubella HOM05D003335 ORTHO05D003853 8.5e-33 144.8 247 37.2
FvH4_4g04520 Fragaria vesca HOM05D003335 ORTHO05D003853 8.5e-33 144.8 246 36.2
FAN22G1996 Fragaria x ananassa HOM05D003335 ORTHO05D003853 8.5e-33 144.8 246 36.2
Os10g0466300 Oryza sativa ssp. japonica HOM05D003335 ORTHO05D003853 8.5e-33 144.8 246 38.6
SGA_v2.0_scaffold67G22696 Striga asiatica HOM05D003335 ORTHO05D003853 8.5e-33 144.8 246 37.8
Zm00001eb046370 Zea mays HOM05D003335 ORTHO05D003853 8.5e-33 144.8 246 37.8
FAN17G2432 Fragaria x ananassa HOM05D003335 ORTHO05D003853 1.1e-32 144.4 246 35.8
Thhalv10007366m.g Eutrema salsugineum HOM05D003335 ORTHO05D003853 1.5e-32 144.1 246 38.2
C05p02680 Brassica napus HOM05D003335 ORTHO05D003853 1.9e-32 143.7 258 37.2
Eucgr.H02940 Eucalyptus grandis HOM05D003335 ORTHO05D003853 2.5e-32 143.3 246 37.0
BolC4t27760H Brassica oleracea HOM05D003335 ORTHO05D003853 3.2e-32 142.9 246 39.0
Rhsim02G0043500 Rhododendron simsii HOM05D003335 ORTHO05D003853 3.2e-32 142.9 279 35.5
A10p02930 Brassica napus HOM05D003335 ORTHO05D003853 7.2e-32 141.7 246 37.4
AT2G33340 Arabidopsis thaliana HOM05D003335 ORTHO05D003853 1.2e-31 141.0 246 37.8
MSTRG.4169 Avicennia marina HOM05D003335 ORTHO05D003853 1.2e-31 141.0 246 37.8
BcaC02g11420 Brassica carinata HOM05D003335 ORTHO05D003853 1.2e-31 141.0 246 37.8
C04p15750 Brassica napus HOM05D003335 ORTHO05D003853 1.2e-31 141.0 246 37.8
BcaB02g10552 Brassica carinata HOM05D003335 ORTHO05D003853 2.1e-31 140.2 246 37.4
THA.LOC104816006 Tarenaya hassleriana HOM05D003335 ORTHO05D003853 2.1e-31 140.2 246 36.6
BraA05t20162Z Brassica rapa HOM05D003335 ORTHO05D003853 4.7e-31 139.0 247 38.5
Prupe.1G047500 Prunus persica HOM05D003335 ORTHO05D003853 4.7e-31 139.0 246 35.4
A05p12180 Brassica napus HOM05D003335 ORTHO05D003853 6.1e-31 138.7 247 38.9
Aa31LG5G3970 Aethionema arabicum HOM05D003335 ORTHO05D003853 1.0e-30 137.9 245 35.9
BolC4t23145H Brassica oleracea HOM05D003335 ORTHO05D003853 2.3e-30 136.7 247 38.1
unitig_736.g22486 Utricularia gibba HOM05D003335 ORTHO05D003853 2.3e-30 136.7 246 36.6
MD13G1220800 Malus domestica HOM05D003335 ORTHO05D003853 6.8e-30 135.2 246 35.8
Actinidia39928 Actinidia chinensis HOM05D003335 ORTHO05D003853 2.6e-29 133.3 232 37.1
Ah.13g072240 Amaranthus hybridus HOM05D003335 ORTHO05D003853 5.7e-29 132.1 283 32.5
Actinidia11371 Actinidia chinensis HOM05D003335 ORTHO05D003853 9.8e-29 131.3 153 46.4
MD16G1225900 Malus domestica HOM05D003335 ORTHO05D003853 3.7e-28 129.4 154 46.8
Cpa.g.sc44.4 Carica papaya HOM05D003335 ORTHO05D003853 3.1e-27 126.3 320 30.9
CDE02G2483 Ceratophyllum demersum HOM05D003335 ORTHO05D003853 3.5e-26 122.9 216 39.4
BcaC07g36904 Brassica carinata HOM05D003335 ORTHO05D003853 4.5e-26 122.5 249 34.9
DCAR_024291 Daucus carota HOM05D003335 ORTHO05D003853 1.0e-25 121.3 216 39.8
AUR62016172 Chenopodium quinoa HOM05D003335 ORTHO05D003853 1.7e-25 120.6 297 31.6
MBI19_g02322_MAGBIO Magnolia biondii HOM05D003335 ORTHO05D003853 1.1e-24 117.9 132 49.2
Nitab4.5_0008835g0030 Nicotiana tabacum HOM05D003335 ORTHO05D003853 5.5e-24 115.5 248 35.9
CsaV3_3G011740 Cucumis sativus L. HOM05D003335 ORTHO05D003853 7.2e-24 115.2 218 39.0
PGSC0003DMG400029342 Solanum tuberosum HOM05D003335 ORTHO05D003853 7.2e-24 115.2 216 38.4
MCO09G018 Micromonas commoda HOM05D003335 ORTHO05D003853 1.2e-21 107.8 136 43.4
Oeu059397.1 Olea europaea HOM05D003335 ORTHO05D003853 8.3e-20 101.7 202 36.6
PRCOL_00002589 Prasinoderma coloniale HOM05D003335 ORTHO05D003853 8.3e-20 101.7 153 39.9
Cre02.g073650 Chlamydomonas reinhardtii HOM05D003335 ORTHO05D003853 2.7e-18 96.7 223 32.7
HPP92_007255 Vanilla planifolia HOM05D003335 ORTHO05D003853 1.3e-17 94.4 191 38.2
Peaxi162Scf00169g00225 Petunia axillaris HOM05D003335 ORTHO05D003853 2.9e-17 93.2 310 28.1
Cfa023889 Carpinus fangiana HOM05D003335 ORTHO05D003853 1.9e-16 90.5 143 38.5
BraA10t42562Z Brassica rapa HOM05D003335 ORTHO05D003853 1.2e-15 87.8 201 34.3
C08p01190 Brassica napus HOM05D003335 ORTHO05D003853 3.6e-15 86.3 192 33.9
SalBow3G4102 Salvia bowleyana HOM05D003335 ORTHO05D003853 2.2e-12 77.0 155 38.7
BolC5t29049H Brassica oleracea HOM05D003335 ORTHO05D003853 3.2e-11 73.2 143 37.1
AL4G28990 Arabidopsis lyrata HOM05D003335 ORTHO05D003853 6.0e-10 68.9 143 37.1
CAN.G220.75 Capsicum annuum HOM05D003335 ORTHO05D003853 1.0e-09 68.2 143 37.1
Haze_26479 Corylus avellana HOM05D000207 ORTHO05D165597 4.3e-08 62.8 145 29.7
VMungo0647G2009 Vigna mungo HOM05D003335 ORTHO05D003853 7.3e-08 62.0 46 60.9
Psat0s3964g0080 Pisum sativum HOM05D003335 ORTHO05D003853 1.2e-07 61.2 143 32.2
VMungo0647G0547 Vigna mungo HOM05D003335 ORTHO05D003853 1.2e-07 61.2 49 53.1
Ciclev10033668m.g Citrus clementina HOM05D003335 ORTHO05D003853 2.1e-07 60.5 85 50.6
VMungo0647G2187 Vigna mungo HOM05D003335 ORTHO05D003853 6.2e-07 58.9 45 57.8


User provided reference genes

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