Gene: Pp3c5_9900

General Information

Structural Information

  • Species Physcomitrium patens
  • Gene Identifier Pp3c5_9900
  • Transcript Identifier Pp3c5_9900V3.2
  • Gene Type Coding gene
  • Location Chr05 : 7252058-7257896 : positive

Gene Family Information

  • ID HOM05D003335
  • #Genes/#Species 205/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • name Pp3c5_9900V3.2
  • pacid 32955182
  • alias Phpat.005G037400
  • alias Pp1s64_187V6
  • alias Phypa_183278
  • uniprot A9SC45

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0042742
ISO
PLAZA Integrative Orthologydefense response to bacterium AT1G04510
GO:0046686
ISO
PLAZA Integrative Orthologyresponse to cadmium ion AT1G04510
GO:0000349
IBA
GOA Databasegeneration of catalytic spliceosome for first transesterification step
GO:0000398
IEA
GOA DatabasemRNA splicing, via spliceosome
GO:0000398
IEA
InterPromRNA splicing, via spliceosome
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0006974
IEA
GOA Databasecellular response to DNA damage stimulus
GO:0006281
IEA
GOA DatabaseDNA repair
GO:0006281
IEA
InterProDNA repair
GO:0070534
IEA
GOA Databaseprotein K63-linked ubiquitination
GO:0016567
IEA
GOA Databaseprotein ubiquitination
GO:0016567
IEA
InterProprotein ubiquitination

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004842
IBA
IEA
GOA Databaseubiquitin-protein transferase activity
GO:0004842
IEA
InterProubiquitin-protein transferase activity
GO:0016740
IEA
GOA Databasetransferase activity
GO:0005515
IEA
InterProprotein binding
GO:0061630
IEA
GOA Databaseubiquitin protein ligase activity
GO:0061630
IEA
InterProubiquitin protein ligase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT1G04510
GO:0005618
ISO
PLAZA Integrative Orthologycell wall AT2G33340
GO:0000974
IBA
IEA
GOA DatabasePrp19 complex
GO:0000974
IEA
InterProPrp19 complex
GO:0071006
IBA
GOA DatabaseU2-type catalytic step 1 spliceosome
GO:0071013
IBA
GOA Databasecatalytic step 2 spliceosome
GO:0005681
IEA
GOA Databasespliceosomal complex
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036322 WD40-repeat-containing domain superfamily
IPR038959 Pre-mRNA-processing factor 19
IPR001680 WD40 repeat
IPR003613 U box domain
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR013915 Pre-mRNA-splicing factor 19
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
Mapman id Description
16.2.5.1.4 RNA processing.pre-mRNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).core components.component MAC3