Gene: Os10g0466300

General Information

Structural Information

  • Species Oryza sativa ssp. japonica
  • Gene Identifier Os10g0466300
  • Transcript Identifier Os10t0466300-01
  • Gene Type Coding gene
  • Location chr10 : 17203876-17210409 : negative

Gene Family Information

  • ID HOM05D003335
  • #Genes/#Species 205/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Os10t0466300-01
  • MSU-ID LOC_Os10g32880.1
  • uniprot Q9AV81

Descriptions

  • Description Similar to Yarrowia lipolytica chromosome C of strain CLIB99 of Yarrowia lipolytica.
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016567
IDA
IEA
GOA Databaseprotein ubiquitination
GO:0016567
IEA
InterProprotein ubiquitination
GO:0000349
IBA
GOA Databasegeneration of catalytic spliceosome for first transesterification step
GO:0000398
IEA
GOA DatabasemRNA splicing, via spliceosome
GO:0000398
IEA
InterPromRNA splicing, via spliceosome
GO:0006281
IEA
GOA DatabaseDNA repair
GO:0006281
IEA
InterProDNA repair
GO:0046686
ISO
PLAZA Integrative Orthologyresponse to cadmium ion AT1G04510
GO:0042742
ISO
PLAZA Integrative Orthologydefense response to bacterium AT1G04510
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0006952
IEA
GOA Databasedefense response
GO:0006974
IEA
GOA Databasecellular response to DNA damage stimulus
GO:0045087
IEA
GOA Databaseinnate immune response
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0002376
IEA
GOA Databaseimmune system process
GO:0070534
ISS
GOA Databaseprotein K63-linked ubiquitination

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004842
IDA
IBA
IEA
GOA Databaseubiquitin-protein transferase activity
GO:0004842
IEA
InterProubiquitin-protein transferase activity
GO:0005515
IEA
InterProprotein binding
GO:0061630
ISS
IEA
GOA Databaseubiquitin protein ligase activity
GO:0061630
IEA
InterProubiquitin protein ligase activity
GO:0016740
IEA
GOA Databasetransferase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000974
IBA
IEA
GOA DatabasePrp19 complex
GO:0000974
IEA
InterProPrp19 complex
GO:0071013
IBA
GOA Databasecatalytic step 2 spliceosome
GO:0071006
IBA
GOA DatabaseU2-type catalytic step 1 spliceosome
GO:0005634
ISS
IEA
GOA Databasenucleus
GO:0005618
ISO
PLAZA Integrative Orthologycell wall AT2G33340
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT1G04510
GO:0005681
IEA
GOA Databasespliceosomal complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
IPR001680 WD40 repeat
IPR013915 Pre-mRNA-splicing factor 19
IPR038959 Pre-mRNA-processing factor 19
IPR003613 U box domain
IPR036322 WD40-repeat-containing domain superfamily
Mapman id Description
16.2.5.1.4 RNA processing.pre-mRNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).core components.component MAC3