Gene: Zm00001eb046370

General Information

Structural Information

  • Species Zea mays
  • Gene Identifier Zm00001eb046370
  • Transcript Identifier Zm00001eb046370_T001
  • Gene Type Coding gene
  • Location 1 : 239718872-239729460 : negative

Gene Family Information

  • ID HOM05D003335
  • #Genes/#Species 205/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Zm00001eb046370_T001
  • pid Zm00001eb046370_P001
  • uniprot A0A1D6KTU9
  • uniprot A0A1D6KTV2
  • uniprot A0A317YHD8
  • uniprot B6TRQ7
  • uniprot A0A1D6KTV0
  • entrez 100284255
  • refseq XP_008678422.1
  • refseq XM_008680200.1
  • refseq NP_001150622.1
  • refseq NM_001157150.1
  • V4_identifier Zm00001d032763

Descriptions

  • Description Zm00001e004625
  • Description Pre-mRNA-splicing factor 19
  • Description Pre-mRNA-processing factor 19 homolog 2
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0042742
ISO
PLAZA Integrative Orthologydefense response to bacterium AT1G04510
GO:0046686
ISO
PLAZA Integrative Orthologyresponse to cadmium ion AT1G04510
GO:0006281
IEA
GOA DatabaseDNA repair
GO:0006281
IEA
InterProDNA repair
GO:0000398
IEA
GOA DatabasemRNA splicing, via spliceosome
GO:0000398
IEA
InterPromRNA splicing, via spliceosome
GO:0016567
IEA
GOA Databaseprotein ubiquitination
GO:0016567
IEA
InterProprotein ubiquitination
GO:0000349
IBA
GOA Databasegeneration of catalytic spliceosome for first transesterification step
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0006974
IEA
GOA Databasecellular response to DNA damage stimulus
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0070534
IEA
GOA Databaseprotein K63-linked ubiquitination

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0061630
IEA
GOA Databaseubiquitin protein ligase activity
GO:0061630
IEA
InterProubiquitin protein ligase activity
GO:0005515
IEA
InterProprotein binding
GO:0004842
IBA
IEA
GOA Databaseubiquitin-protein transferase activity
GO:0004842
IEA
InterProubiquitin-protein transferase activity
GO:0016740
IEA
GOA Databasetransferase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0071006
IBA
GOA DatabaseU2-type catalytic step 1 spliceosome
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT1G04510
GO:0005618
ISO
PLAZA Integrative Orthologycell wall AT2G33340
GO:0000974
IBA
IEA
GOA DatabasePrp19 complex
GO:0000974
IEA
InterProPrp19 complex
GO:0071013
IBA
GOA Databasecatalytic step 2 spliceosome
GO:0005681
IEA
GOA Databasespliceosomal complex
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003613 U box domain
IPR001680 WD40 repeat
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR036322 WD40-repeat-containing domain superfamily
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
IPR038959 Pre-mRNA-processing factor 19
IPR013915 Pre-mRNA-splicing factor 19
Mapman id Description
16.2.5.1.4 RNA processing.pre-mRNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).core components.component MAC3