Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c14_7190 Physcomitrium patens HOM05D015656 ORTHO05D012968 2.2e-307 1058.1 527 100.0
AagrBONN_evm.TU.Sc2ySwM_344.4909 Anthoceros agrestis HOM05D015656 ORTHO05D012968 1.2e-135 487.6 369 65.6
Mapoly0054s0029 Marchantia polymorpha HOM05D015656 ORTHO05D012968 2.5e-122 443.4 383 58.0
CBR_g12605 Chara braunii HOM05D003266 ORTHO05D012968 1.4e-112 411.0 383 54.8
MCO13G543 Micromonas commoda HOM05D015656 ORTHO05D012968 2.2e-62 244.2 369 38.2
SMO361G0246 Selaginella moellendorffii HOM05D015656 ORTHO05D012968 1.0e-59 235.3 351 40.7
PRCOL_00006591 Prasinoderma coloniale HOM05D015656 ORTHO05D012968 2.3e-59 234.2 398 37.4
Pp3s169_60 Physcomitrium patens HOM05D003266 ORTHO05D012968 2.4e-40 171.0 258 35.7
SMO356G0519 Selaginella moellendorffii HOM05D015656 ORTHO05D012968 6.4e-25 119.8 405 30.1
Cre12.g492250 Chlamydomonas reinhardtii HOM05D015656 ORTHO05D012968 8.6e-22 109.4 425 24.7
Cre09.g394700 Chlamydomonas reinhardtii HOM05D015656 ORTHO05D012968 8.1e-20 102.8 380 24.5
Glyma.15G017900 Glycine max HOM05D003266 ORTHO05D003718 1.1e-16 92.4 322 28.0
Oeu062570.2 Olea europaea HOM05D003266 ORTHO05D003718 1.9e-16 91.7 318 27.7
Nn2g12597 Nelumbo nucifera HOM05D003266 ORTHO05D003718 2.4e-16 91.3 348 27.9
Nitab4.5_0000571g0240 Nicotiana tabacum HOM05D003266 ORTHO05D003718 4.1e-16 90.5 318 28.6
VMungo1080G0852 Vigna mungo HOM05D003266 ORTHO05D003718 4.1e-16 90.5 323 28.2
Glyma.13G356200 Glycine max HOM05D003266 ORTHO05D003718 1.2e-15 89.0 322 27.3
Gohir.D01G054332 Gossypium hirsutum HOM05D003266 ORTHO05D003718 1.2e-15 89.0 319 26.0
AUR62031873 Chenopodium quinoa HOM05D003266 ORTHO05D003718 1.6e-15 88.6 327 28.1
Gorai.002G074200 Gossypium raimondii HOM05D003266 ORTHO05D003718 1.6e-15 88.6 319 26.0
Phvul.005G170100 Phaseolus vulgaris HOM05D003266 ORTHO05D003718 1.6e-15 88.6 315 27.6
SEGI_12386 Sequoiadendron giganteum HOM05D003266 ORTHO05D003718 2.1e-15 88.2 327 26.9
GSVIVG01017040001 Vitis vinifera HOM05D003266 ORTHO05D003718 2.1e-15 88.2 321 28.3
Cc04_g02800 Coffea canephora HOM05D003266 ORTHO05D003718 3.5e-15 87.4 315 28.3
Hund00661 Selenicereus undatus HOM05D003266 ORTHO05D003718 3.5e-15 87.4 336 26.8
PGR102G0722 Punica granatum HOM05D003266 ORTHO05D003718 4.6e-15 87.0 327 28.4
Sed0017993 Sechium edule HOM05D003266 ORTHO05D003718 6.0e-15 86.7 329 25.8
AUR62022165 Chenopodium quinoa HOM05D003266 ORTHO05D003718 7.8e-15 86.3 327 28.4
TAR383G0500 Trochodendron aralioides HOM05D003266 ORTHO05D003718 7.8e-15 86.3 386 26.7
Zm00001eb339290 Zea mays HOM05D003266 ORTHO05D003718 7.8e-15 86.3 333 26.4
MELO3C024265.2 Cucumis melo HOM05D003266 ORTHO05D003718 1.0e-14 85.9 331 27.5
CsaV3_7G033540 Cucumis sativus L. HOM05D003266 ORTHO05D003718 1.0e-14 85.9 331 27.2
Duzib160G0509 Durio zibethinus HOM05D003266 ORTHO05D003718 1.0e-14 85.9 327 26.3
CANSAT56G3441 Cannabis sativa HOM05D003266 ORTHO05D003718 1.3e-14 85.5 317 27.1
Thecc.06G095700 Theobroma cacao HOM05D003266 ORTHO05D003718 3.0e-14 84.3 327 26.6
Atru.chr1.3468 Acer truncatum HOM05D003266 ORTHO05D003718 3.9e-14 84.0 322 26.7
Sopen00g008370 Solanum pennellii HOM05D003266 ORTHO05D003718 3.9e-14 84.0 323 28.8
Sopen10g030300 Solanum pennellii HOM05D003266 ORTHO05D003718 3.9e-14 84.0 347 26.5
Actinidia21698 Actinidia chinensis HOM05D003266 ORTHO05D003718 6.6e-14 83.2 337 25.5
EL10Ac2g02463 Beta vulgaris HOM05D003266 ORTHO05D003718 6.6e-14 83.2 335 26.6
Potri.001G186900 Populus trichocarpa HOM05D003266 ORTHO05D003718 6.6e-14 83.2 324 25.9
AUR62032438 Chenopodium quinoa HOM05D003266 ORTHO05D003718 8.6e-14 82.8 351 27.1
Gorai.011G072800 Gossypium raimondii HOM05D003266 ORTHO05D003718 1.1e-13 82.4 331 25.4
TWI12G1119 Tripterygium wilfordii HOM05D003266 ORTHO05D003718 1.1e-13 82.4 327 25.7
TAR636G2661 Trochodendron aralioides HOM05D003266 ORTHO05D003718 1.1e-13 82.4 330 27.0
RcHm_v2.0_Chr2g0139581 Rosa chinensis HOM05D003266 ORTHO05D003718 1.5e-13 82.0 316 26.9
DCAR_026337 Daucus carota HOM05D003266 ORTHO05D003718 1.9e-13 81.6 341 27.0
Solyc03g120470.4 Solanum lycopersicum HOM05D003266 ORTHO05D003718 1.9e-13 81.6 327 27.8
CSS0002644 Camellia sinensis var. sinensis HOM05D003266 ORTHO05D003718 3.3e-13 80.9 331 26.6
Cfa002112 Carpinus fangiana HOM05D003266 ORTHO05D003718 3.3e-13 80.9 319 26.0
COL.COLO4_30471 Corchorus olitorius HOM05D003266 ORTHO05D003718 4.3e-13 80.5 327 25.4
Migut.I00926 Erythranthe guttata HOM05D003266 ORTHO05D003718 4.3e-13 80.5 320 26.6
Lalb_Chr22g0351451 Lupinus albus HOM05D003266 ORTHO05D003718 4.3e-13 80.5 315 27.6
Aa31LG8G3410 Aethionema arabicum HOM05D003266 ORTHO05D003718 5.6e-13 80.1 317 25.2
PGSC0003DMG401002553 Solanum tuberosum HOM05D003266 ORTHO05D003718 5.6e-13 80.1 381 26.2
TAR626G0182 Trochodendron aralioides HOM05D003266 ORTHO05D003718 5.6e-13 80.1 332 26.8
CiPaw.01G233800 Carya illinoinensis HOM05D003266 ORTHO05D003718 7.3e-13 79.7 333 27.0
Gohir.D10G068200 Gossypium hirsutum HOM05D003266 ORTHO05D003718 7.3e-13 79.7 331 25.1
HanXRQChr16g0501281 Helianthus annuus HOM05D003266 ORTHO05D003718 7.3e-13 79.7 316 27.8
PSO339G2930 Papaver somniferum HOM05D003266 ORTHO05D003718 7.3e-13 79.7 353 27.8
Manes.11G036300 Manihot esculenta HOM05D003266 ORTHO05D003718 9.6e-13 79.3 334 25.7
Sed0020980 Sechium edule HOM05D003266 ORTHO05D003718 9.6e-13 79.3 315 26.7
Actinidia32711 Actinidia chinensis HOM05D003266 ORTHO05D003718 1.2e-12 79.0 339 26.3
AUR62024783 Chenopodium quinoa HOM05D003266 ORTHO05D003718 1.2e-12 79.0 337 26.4
Thhalv10011231m.g Eutrema salsugineum HOM05D003266 ORTHO05D003718 1.6e-12 78.6 315 25.4
Manes.08G110200 Manihot esculenta HOM05D003266 ORTHO05D003718 1.6e-12 78.6 345 27.0
PGSC0003DMG400026462 Solanum tuberosum HOM05D003266 ORTHO05D003718 1.6e-12 78.6 332 25.6
vmacro18872 Vaccinium macrocarpon HOM05D003266 ORTHO05D003718 1.6e-12 78.6 343 25.1
HanXRQChr09g0275951 Helianthus annuus HOM05D003266 ORTHO05D003718 2.1e-12 78.2 225 28.0
Lj9C510G10 Lonicera japonica HOM05D003266 ORTHO05D003718 2.1e-12 78.2 233 27.9
Lsat_1_v5_gn_4_100861 Lactuca sativa HOM05D003266 ORTHO05D003718 3.6e-12 77.4 254 28.3
Mapoly0003s0137 Marchantia polymorpha HOM05D003266 ORTHO05D003718 3.6e-12 77.4 325 27.7
AL1G60260 Arabidopsis lyrata HOM05D003266 ORTHO05D003718 4.7e-12 77.0 315 25.7
Gohir.A10G067100 Gossypium hirsutum HOM05D003266 ORTHO05D003718 4.7e-12 77.0 331 24.8
Hund09088 Selenicereus undatus HOM05D003266 ORTHO05D003718 4.7e-12 77.0 367 25.9
Aa31LG10G2720 Aethionema arabicum HOM05D003266 ORTHO05D003718 6.2e-12 76.6 341 27.3
CARHR091470 Cardamine hirsuta HOM05D003266 ORTHO05D003718 6.2e-12 76.6 317 25.2
MSTRG.22654 Avicennia marina HOM05D003266 ORTHO05D003718 8.1e-12 76.3 412 25.2
PSO017G5626 Papaver somniferum HOM05D003266 ORTHO05D003718 8.1e-12 76.3 317 27.1
Rhsim08G0225600 Rhododendron simsii HOM05D003266 ORTHO05D003718 8.1e-12 76.3 334 24.9
Solyc10g079670.2 Solanum lycopersicum HOM05D003266 ORTHO05D003718 8.1e-12 76.3 421 25.2
ECA232G0114 Erigeron canadensis HOM05D003266 ORTHO05D003718 1.1e-11 75.9 227 29.1
Aqoxy7G01499 Aquilegia oxysepala HOM05D003266 ORTHO05D003718 1.4e-11 75.5 406 25.4
BcaB06g25715 Brassica carinata HOM05D003266 ORTHO05D003718 1.8e-11 75.1 344 24.7
BcaC05g28901 Brassica carinata HOM05D003266 ORTHO05D003718 1.8e-11 75.1 319 25.1
C05p50250 Brassica napus HOM05D003266 ORTHO05D003718 2.4e-11 74.7 319 25.1
BolC5t33776H Brassica oleracea HOM05D003266 ORTHO05D003718 2.4e-11 74.7 319 25.1
CANSAT80G0873 Cannabis sativa HOM05D003266 ORTHO05D003718 2.4e-11 74.7 364 26.6
Eucgr.J02950 Eucalyptus grandis HOM05D003266 ORTHO05D003718 2.4e-11 74.7 325 27.7
BraA05t22151Z Brassica rapa HOM05D003266 ORTHO05D003718 3.1e-11 74.3 318 24.5
Sp1g38720 Schrenkiella parvula HOM05D003266 ORTHO05D003718 3.1e-11 74.3 315 25.1
Prupe.3G063700 Prunus persica HOM05D003266 ORTHO05D003718 4.0e-11 73.9 324 27.5
CBR_g8326 Chara braunii HOM05D003266 ORTHO05D003718 6.8e-11 73.2 361 25.2
Carub.0003s1601 Capsella rubella HOM05D003266 ORTHO05D003718 1.2e-10 72.4 332 25.9
Nitab4.5_0003039g0050 Nicotiana tabacum HOM05D003266 ORTHO05D003718 1.5e-10 72.0 327 26.0
MD03G1197500 Malus domestica HOM05D003266 ORTHO05D003718 2.6e-10 71.2 365 25.5
A05p33260 Brassica napus HOM05D003266 ORTHO05D003718 3.4e-10 70.9 239 25.9
Carub.0001s4111 Capsella rubella HOM05D003266 ORTHO05D003718 3.4e-10 70.9 320 26.6
Cre01.g039900 Chlamydomonas reinhardtii HOM05D003266 ORTHO05D003718 3.4e-10 70.9 76 47.4
Sp3g14630 Schrenkiella parvula HOM05D003266 ORTHO05D003718 3.4e-10 70.9 242 25.6
Hund06647 Selenicereus undatus HOM05D003266 ORTHO05D003718 3.4e-10 70.9 319 27.3
AT3G16260 Arabidopsis thaliana HOM05D003266 ORTHO05D003718 4.4e-10 70.5 241 26.1
Psat5g297200 Pisum sativum HOM05D003266 ORTHO05D003718 4.4e-10 70.5 252 25.8
SMO201G0121 Selaginella moellendorffii HOM05D003266 ORTHO05D003718 4.4e-10 70.5 320 27.5
AT1G52160 Arabidopsis thaliana HOM05D003266 ORTHO05D003718 5.8e-10 70.1 237 26.6
Nitab4.5_0002424g0070 Nicotiana tabacum HOM05D003266 ORTHO05D003718 5.8e-10 70.1 251 26.3
AL3G29000 Arabidopsis lyrata HOM05D003266 ORTHO05D003718 9.9e-10 69.3 225 27.1
BraA06t23416Z Brassica rapa HOM05D003266 ORTHO05D003718 9.9e-10 69.3 253 26.1
A06p02000 Brassica napus HOM05D003266 ORTHO05D003718 1.3e-09 68.9 253 26.1
C06p07410 Brassica napus HOM05D003266 ORTHO05D003718 1.3e-09 68.9 253 26.1
BolC6t35830H Brassica oleracea HOM05D003266 ORTHO05D003718 1.3e-09 68.9 253 26.1
Ciclev10024815m.g Citrus clementina HOM05D003266 ORTHO05D003718 1.3e-09 68.9 236 25.4
Thhalv10019999m.g Eutrema salsugineum HOM05D003266 ORTHO05D003718 1.3e-09 68.9 245 25.7
Lj3g0015133 Lotus japonicus HOM05D003266 ORTHO05D003718 2.2e-09 68.2 252 27.4
Aqoxy5G00790 Aquilegia oxysepala HOM05D003266 ORTHO05D003718 2.9e-09 67.8 338 28.1
Oeu040356.1 Olea europaea HOM05D003266 ORTHO05D003718 2.9e-09 67.8 230 26.1
Nitab4.5_0013558g0010 Nicotiana tabacum HOM05D003266 ORTHO05D003718 3.8e-09 67.4 319 26.0
THA.LOC104817970 Tarenaya hassleriana HOM05D003266 ORTHO05D003718 3.8e-09 67.4 228 27.6
Lj5C56T10 Lonicera japonica HOM05D003266 ORTHO05D003718 4.9e-09 67.0 249 27.3
Pp3c18_12540 Physcomitrium patens HOM05D003266 ORTHO05D003718 4.9e-09 67.0 318 24.5
CAN.G641.60 Capsicum annuum HOM05D003266 ORTHO05D003718 6.4e-09 66.6 142 33.8
CARHR042320 Cardamine hirsuta HOM05D003266 ORTHO05D003718 6.4e-09 66.6 312 24.4
PSO210G4271 Papaver somniferum HOM05D003266 ORTHO05D003718 8.4e-09 66.2 227 27.3
ClCG09G001800 Citrullus lanatus HOM05D003266 ORTHO05D003718 1.1e-08 65.9 255 23.9
Sc12g0009560 Simmondsia chinensis HOM05D003266 ORTHO05D003718 1.1e-08 65.9 241 26.6
Sc12g0009670 Simmondsia chinensis HOM05D003266 ORTHO05D003718 1.1e-08 65.9 241 26.6
Hma1.2p1_1689F.1_g297710 Hydrangea macrophylla HOM05D003266 ORTHO05D003718 1.4e-08 65.5 266 27.1
Peaxi162Scf00015g00241 Petunia axillaris HOM05D003266 ORTHO05D003718 1.4e-08 65.5 224 27.2
Dinv38001 Davidia involucrata HOM05D003266 ORTHO05D003718 1.9e-08 65.1 252 25.8
MCO04G482 Micromonas commoda HOM05D003266 ORTHO05D003718 1.9e-08 65.1 321 23.4
Nitab4.5_0006202g0010 Nicotiana tabacum HOM05D003266 ORTHO05D003718 1.9e-08 65.1 281 26.3
arahy.Tifrunner.gnm1.ann1.X5C2Q6 Arachis hypogaea HOM05D003266 ORTHO05D003718 2.4e-08 64.7 237 27.0
PRCOL_00000971 Prasinoderma coloniale HOM05D003266 ORTHO05D003718 3.2e-08 64.3 306 23.5
COL.COLO4_29286 Corchorus olitorius HOM05D003266 ORTHO05D003718 4.2e-08 63.9 321 23.1
Medtr2g101390 Medicago truncatula HOM05D003266 ORTHO05D003718 7.1e-08 63.2 266 25.9
EL10Ac9g22044 Beta vulgaris HOM05D003266 ORTHO05D003718 9.3e-08 62.8 228 26.8
SEGI_03828 Sequoiadendron giganteum HOM05D006301 ORTHO05D012968 1.2e-07 62.4 88 40.9
Cpa.g.sc34.31 Carica papaya HOM05D003266 ORTHO05D003718 1.6e-07 62.0 227 26.0
FAN05G1225 Fragaria x ananassa HOM05D003266 ORTHO05D003718 1.6e-07 62.0 281 25.3
CSS0038683 Camellia sinensis var. sinensis HOM05D003266 ORTHO05D003718 2.1e-07 61.6 248 26.2
CANSAT80G0796 Cannabis sativa HOM05D003266 ORTHO05D003718 2.1e-07 61.6 229 26.6
Hma1.2p1_1689F.1_g297680 Hydrangea macrophylla HOM05D003266 ORTHO05D003718 4.6e-07 60.5 115 36.5
Ca_01149_v3 Cicer arietinum L. HOM05D003266 ORTHO05D003718 6.0e-07 60.1 245 26.1
TPR.G37248 Trifolium pratense HOM05D003266 ORTHO05D003718 6.0e-07 60.1 302 23.8
Haze_16335 Corylus avellana HOM05D003266 ORTHO05D003718 7.8e-07 59.7 238 26.5
FvH4_6g31990 Fragaria vesca HOM05D003266 ORTHO05D003718 7.8e-07 59.7 367 25.9
Ah.01g021810 Amaranthus hybridus HOM05D003266 ORTHO05D003718 1.0e-06 59.3 226 24.8
MBI04_g27074_MAGBIO Magnolia biondii HOM05D003266 ORTHO05D003718 1.3e-06 58.9 357 23.5
Sabra01G0153400 Salix brachista HOM05D003266 ORTHO05D003718 1.3e-06 58.9 333 24.9
Zm00001eb316420 Zea mays HOM05D002669 ORTHO05D003001 1.3e-06 58.9 283 24.7
Lsat_1_v5_gn_7_94680 Lactuca sativa HOM05D002669 ORTHO05D003001 1.7e-06 58.5 282 23.8
Lalb_Chr24g0396021 Lupinus albus HOM05D003266 ORTHO05D003718 1.7e-06 58.5 262 24.4
PSO210G6470 Papaver somniferum HOM05D003266 ORTHO05D003718 1.7e-06 58.5 326 23.6
QL05p021182 Quercus lobata HOM05D003266 ORTHO05D003718 2.3e-06 58.2 351 22.2
AT2G04530 Arabidopsis thaliana HOM05D002669 ORTHO05D003001 5.1e-06 57.0 269 24.5
CAN.G394.131 Capsicum annuum HOM05D003266 ORTHO05D003718 6.6e-06 56.6 114 33.3
Gohir.A01G067100 Gossypium hirsutum HOM05D003266 ORTHO05D003718 6.6e-06 56.6 108 31.5
Peaxi162Scf00034g00317 Petunia axillaris HOM05D003266 ORTHO05D003718 6.6e-06 56.6 219 24.7
unitig_748.g8095 Utricularia gibba HOM05D003266 ORTHO05D003718 6.6e-06 56.6 70 40.0


User provided reference genes

Program Settings