Gene: Sopen10g030300
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen10g030300
- Transcript Identifier Sopen10g030300.2
- Gene Type Coding gene
- Location Spenn-ch10 : 77975194-77988854 : positive
Gene Family Information
- ID HOM05D003266
- #Genes/#Species 210/100
- Phylogenetic origin
- ID ORTHO05D003718
- #Genes/#Species 208/100
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Sopen10g030300.2
Descriptions
- Description Encodes a tRNase Z. | tRNAse Z4 (TRZ4) | FUNCTIONS IN: 3-tRNA processing endoribonuclease activity, catalytic activity | INVOLVED IN: tRNA 3-end processing, metabolic process | LOCATED IN: chloroplast | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Ribonuclease Z | BEST Arabidopsis thaliana protein match is: tRNAse Z3
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0008033 | IEA | InterPro | tRNA processing |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0046983 | IEA | InterPro | protein dimerization activity |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR036866 | Ribonuclease Z/Hydroxyacylglutathione hydrolase-like |
| IPR036638 | Helix-loop-helix DNA-binding domain superfamily |
| IPR016024 | Armadillo-type fold |
| IPR011989 | Armadillo-like helical |
| IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| IPR027794 | tRNase Z endonuclease |
| IPR001279 | Metallo-beta-lactamase |
| Mapman id | Description |
|---|---|
| 15.5.30 | RNA biosynthesis.transcriptional regulation.transcription factor (bHLH) |
| 16.6.1 | RNA processing.ribonuclease activities.endoribonuclease (RNase Z) |
| 25.4.2.1.6 | Nutrient uptake.metal homeostasis.iron.regulation.bHLH-Ib-class iron/copper homeostasis regulator |
| 25.4.3.1.3 | Nutrient uptake.metal homeostasis.copper.regulation.bHLH-Ib-class iron/copper homeostasis regulator |