Gene: Sopen10g030300

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen10g030300
  • Transcript Identifier Sopen10g030300.2
  • Gene Type Coding gene
  • Location Spenn-ch10 : 77975194-77988854 : positive

Gene Family Information

  • ID HOM05D003266
  • #Genes/#Species 210/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen10g030300.2

Descriptions

  • Description Encodes a tRNase Z. | tRNAse Z4 (TRZ4) | FUNCTIONS IN: 3-tRNA processing endoribonuclease activity, catalytic activity | INVOLVED IN: tRNA 3-end processing, metabolic process | LOCATED IN: chloroplast | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Ribonuclease Z | BEST Arabidopsis thaliana protein match is: tRNAse Z3
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008033
IEA
InterProtRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046983
IEA
InterProprotein dimerization activity

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like
IPR036638 Helix-loop-helix DNA-binding domain superfamily
IPR016024 Armadillo-type fold
IPR011989 Armadillo-like helical
IPR011598 Myc-type, basic helix-loop-helix (bHLH) domain
IPR027794 tRNase Z endonuclease
IPR001279 Metallo-beta-lactamase
Mapman id Description
15.5.30 RNA biosynthesis.transcriptional regulation.transcription factor (bHLH)
16.6.1 RNA processing.ribonuclease activities.endoribonuclease (RNase Z)
25.4.2.1.6 Nutrient uptake.metal homeostasis.iron.regulation.bHLH-Ib-class iron/copper homeostasis regulator
25.4.3.1.3 Nutrient uptake.metal homeostasis.copper.regulation.bHLH-Ib-class iron/copper homeostasis regulator