Gene: AT3G16260

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G16260
  • Transcript Identifier AT3G16260.1
  • Gene Type Coding gene
  • Location Chr3 : 5509397-5513118 : positive

Gene Family Information

  • ID HOM05D003266
  • #Genes/#Species 210/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G16260.1
  • symbol TRZ4
  • uniprot F4J1H7

Descriptions

  • Description tRNAse Z4
  • Computational description tRNAse Z4 (TRZ4); FUNCTIONS IN: 3'-tRNA processing endoribonuclease activity, catalytic activity; INVOLVED IN: tRNA 3'-end processing, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease Z (InterPro:IPR013471); BEST Arabidopsis thaliana protein match is: tRNAse Z3 (TAIR:AT1G52160.1); Has 6299 Blast hits to 4396 proteins in 1654 species: Archae - 442; Bacteria - 4351; Metazoa - 254; Fungi - 243; Plants - 108; Viruses - 0; Other Eukaryotes - 901 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008033
IEA
GOA DatabasetRNA processing
GO:0008033
IEA
InterProtRNA processing
GO:0072684
IBA
Gene Ontologymitochondrial tRNA 3'-trailer cleavage, endonucleolytic1
GO:0042780
IDA
Gene OntologytRNA 3'-end processing2
GO:0034414
IDA
Gene OntologytRNA 3'-trailer cleavage, endonucleolytic2
GO:0042779
IEA
Gene OntologytRNA 3'-trailer cleavage

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0042781
IDA
IBA
IEA
Gene Ontology3'-tRNA processing endoribonuclease activity1 2
GO:0004518
IEA
GOA Databasenuclease activity
GO:0004519
IEA
GOA Databaseendonuclease activity
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0016891
IEA
Gene Ontologyendoribonuclease activity, producing 5'-phosphomonoesters

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005739
IEA
GOA Databasemitochondrion
GO:0005739
IBA
Gene Ontologymitochondrion1
GO:0005634
ISM
Gene Ontologynucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like
IPR027794 tRNase Z endonuclease
Mapman id Description
16.6.1 RNA processing.ribonuclease activities.endoribonuclease (RNase Z)