Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c10_5020 Physcomitrium patens HOM05D005140 ORTHO05D006288 3.5e-270 934.5 505 100.0
AagrBONN_evm.TU.Sc2ySwM_344.2637 Anthoceros agrestis HOM05D005140 ORTHO05D006288 2.0e-148 530.0 462 60.4
Mapoly0062s0029 Marchantia polymorpha HOM05D005140 ORTHO05D006288 1.5e-140 503.8 464 57.8
Ca_24617_v3 Cicer arietinum L. HOM05D005140 ORTHO05D006288 3.8e-128 462.6 472 53.6
Atru.chr9.1157 Acer truncatum HOM05D005140 ORTHO05D006288 8.6e-128 461.5 446 54.3
MELO3C003340.2 Cucumis melo HOM05D005140 ORTHO05D006288 7.3e-127 458.4 452 54.0
CsaV3_3G049760 Cucumis sativus L. HOM05D005140 ORTHO05D006288 1.2e-126 457.6 472 52.3
ClCG09G012630 Citrullus lanatus HOM05D005140 ORTHO05D006288 2.1e-126 456.8 471 51.8
Glyma.01G204000 Glycine max HOM05D005140 ORTHO05D006288 6.1e-126 455.3 451 52.8
PGR031G2829 Punica granatum HOM05D005140 ORTHO05D006288 6.1e-126 455.3 450 53.1
ATR0665G273 Amborella trichopoda HOM05D005140 ORTHO05D006288 1.0e-125 454.5 453 51.4
Haze_08349 Corylus avellana HOM05D005140 ORTHO05D006288 1.4e-125 454.1 454 50.7
Gorai.004G191200 Gossypium raimondii HOM05D005140 ORTHO05D006288 1.4e-125 454.1 457 51.4
Glyma.11G039000 Glycine max HOM05D005140 ORTHO05D006288 1.8e-125 453.8 452 52.7
Psat2g175480 Pisum sativum HOM05D005140 ORTHO05D006288 2.3e-125 453.4 447 53.2
Gohir.D08G182300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 3.0e-125 453.0 449 51.9
CiPaw.12G056200 Carya illinoinensis HOM05D005140 ORTHO05D006288 1.2e-124 451.1 445 52.1
Lalb_Chr09g0324091 Lupinus albus HOM05D005140 ORTHO05D006288 1.5e-124 450.7 450 53.6
TAR636G3078 Trochodendron aralioides HOM05D005140 ORTHO05D006288 2.0e-124 450.3 451 52.5
Eucgr.D02138 Eucalyptus grandis HOM05D005140 ORTHO05D006288 2.6e-124 449.9 461 51.6
Lsat_1_v5_gn_6_94760 Lactuca sativa HOM05D005140 ORTHO05D006288 2.6e-124 449.9 451 51.9
Sed0020438 Sechium edule HOM05D005140 ORTHO05D006288 2.6e-124 449.9 455 52.5
Rhsim07G0119600 Rhododendron simsii HOM05D005140 ORTHO05D006288 3.4e-124 449.5 451 51.9
QL12p008469 Quercus lobata HOM05D005140 ORTHO05D006288 7.5e-124 448.4 448 52.0
Hund14471 Selenicereus undatus HOM05D005140 ORTHO05D006288 7.5e-124 448.4 450 52.4
MD00G1132300 Malus domestica HOM05D005140 ORTHO05D006288 9.8e-124 448.0 477 50.3
CANSAT21G2106 Cannabis sativa HOM05D005140 ORTHO05D006288 1.3e-123 447.6 447 51.2
Cc08_g11170 Coffea canephora HOM05D005140 ORTHO05D006288 1.3e-123 447.6 446 51.6
Prupe.5G053400 Prunus persica HOM05D005140 ORTHO05D006288 1.7e-123 447.2 477 50.9
Thecc.03G238100 Theobroma cacao HOM05D005140 ORTHO05D006288 4.9e-123 445.7 486 49.0
Phvul.002G002400 Phaseolus vulgaris HOM05D005140 ORTHO05D006288 6.4e-123 445.3 447 52.6
Solyc08g077750.4 Solanum lycopersicum HOM05D005140 ORTHO05D006288 8.3e-123 444.9 449 51.7
Sopen08g026270 Solanum pennellii HOM05D005140 ORTHO05D006288 1.1e-122 444.5 450 51.3
Nn6g33739 Nelumbo nucifera HOM05D005140 ORTHO05D006288 1.4e-122 444.1 448 51.6
Medtr5g013580 Medicago truncatula HOM05D005140 ORTHO05D006288 1.8e-122 443.7 447 55.7
Sed0013740 Sechium edule HOM05D005140 ORTHO05D006288 2.4e-122 443.4 451 52.3
arahy.Tifrunner.gnm1.ann1.FH98R9 Arachis hypogaea HOM05D005140 ORTHO05D006288 3.2e-122 443.0 451 53.7
arahy.Tifrunner.gnm1.ann1.W7TPG2 Arachis hypogaea HOM05D005140 ORTHO05D006288 3.2e-122 443.0 451 53.7
ECA240G1687 Erigeron canadensis HOM05D005140 ORTHO05D006288 4.1e-122 442.6 450 51.3
PSO063G3549 Papaver somniferum HOM05D005140 ORTHO05D006288 5.4e-122 442.2 453 51.9
DCAR_008319 Daucus carota HOM05D005140 ORTHO05D006288 7.0e-122 441.8 446 51.8
PSO782G2508 Papaver somniferum HOM05D005140 ORTHO05D006288 7.0e-122 441.8 453 51.9
Carub.0007s2375 Capsella rubella HOM05D005140 ORTHO05D006288 9.2e-122 441.4 456 51.1
CARHR224350 Cardamine hirsuta HOM05D005140 ORTHO05D006288 9.2e-122 441.4 455 51.4
COL.COLO4_06693 Corchorus olitorius HOM05D005140 ORTHO05D006288 9.2e-122 441.4 458 51.1
vmacro23518 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 1.6e-121 440.7 451 51.9
Sp7g16510 Schrenkiella parvula HOM05D005140 ORTHO05D006288 2.0e-121 440.3 446 50.9
FAN08G1378 Fragaria x ananassa HOM05D005140 ORTHO05D006288 3.5e-121 439.5 451 51.4
FAN13G1317 Fragaria x ananassa HOM05D005140 ORTHO05D006288 7.8e-121 438.3 450 51.6
Lj2g0026795 Lotus japonicus HOM05D005140 ORTHO05D006288 7.8e-121 438.3 447 51.5
TWI60G0080 Tripterygium wilfordii HOM05D005140 ORTHO05D006288 7.8e-121 438.3 469 50.1
Migut.F01520 Erythranthe guttata HOM05D005140 ORTHO05D006288 1.0e-120 438.0 474 49.2
Manes.01G182900 Manihot esculenta HOM05D005140 ORTHO05D006288 1.0e-120 438.0 448 51.6
BcaNung00074 Brassica carinata HOM05D005140 ORTHO05D006288 1.7e-120 437.2 455 51.0
Potri.001G149900 Populus trichocarpa HOM05D005140 ORTHO05D006288 3.0e-120 436.4 448 50.9
Ah.12g053860 Amaranthus hybridus HOM05D005140 ORTHO05D006288 3.9e-120 436.0 446 51.3
FvH4_5g20680 Fragaria vesca HOM05D005140 ORTHO05D006288 3.9e-120 436.0 450 51.1
RcHm_v2.0_Chr7g0206411 Rosa chinensis HOM05D005140 ORTHO05D006288 5.0e-120 435.6 450 50.9
AT4G17620 Arabidopsis thaliana HOM05D005140 ORTHO05D006288 6.6e-120 435.3 455 50.8
FAN04G2093 Fragaria x ananassa HOM05D005140 ORTHO05D006288 6.6e-120 435.3 450 51.3
Aqoxy3G02576 Aquilegia oxysepala HOM05D005140 ORTHO05D006288 1.1e-119 434.5 450 50.9
Gohir.A08G162300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 1.1e-119 434.5 352 58.2
MD06G1045500 Malus domestica HOM05D005140 ORTHO05D006288 1.5e-119 434.1 456 50.4
THA.LOC104798349 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 1.5e-119 434.1 456 50.7
CAN.G572.25 Capsicum annuum HOM05D005140 ORTHO05D006288 2.5e-119 433.3 449 51.2
Thhalv10024864m.g Eutrema salsugineum HOM05D005140 ORTHO05D006288 4.3e-119 432.6 444 50.2
BcaNung03452 Brassica carinata HOM05D005140 ORTHO05D006288 5.6e-119 432.2 450 51.1
HanXRQChr03g0089631 Helianthus annuus HOM05D005140 ORTHO05D006288 5.6e-119 432.2 353 58.6
HPP92_020526 Vanilla planifolia HOM05D005140 ORTHO05D006288 9.5e-119 431.4 447 51.5
Peaxi162Scf00301g01111 Petunia axillaris HOM05D005140 ORTHO05D006288 1.2e-118 431.0 453 50.8
SGA_v2.0_scaffold20G09272 Striga asiatica HOM05D005140 ORTHO05D006288 1.6e-118 430.6 461 49.9
MSTRG.13768 Avicennia marina HOM05D005140 ORTHO05D006288 2.8e-118 429.9 447 50.8
BcaC06g33554 Brassica carinata HOM05D005140 ORTHO05D006288 3.6e-118 429.5 449 49.4
BraA03t14147Z Brassica rapa HOM05D005140 ORTHO05D006288 3.6e-118 429.5 457 49.9
A03p50570 Brassica napus HOM05D005140 ORTHO05D006288 8.0e-118 428.3 452 49.1
Dinv25152 Davidia involucrata HOM05D005140 ORTHO05D006288 8.0e-118 428.3 452 49.8
unitig_699.g19774 Utricularia gibba HOM05D005140 ORTHO05D006288 8.0e-118 428.3 451 51.0
C01p11300 Brassica napus HOM05D005140 ORTHO05D006288 1.4e-117 427.6 450 50.7
SMO259G0041 Selaginella moellendorffii HOM05D005140 ORTHO05D006288 1.8e-117 427.2 326 60.4
GSVIVG01013286001 Vitis vinifera HOM05D005140 ORTHO05D006288 2.3e-117 426.8 353 57.5
EL10Ac5g12239 Beta vulgaris HOM05D005140 ORTHO05D006288 4.0e-117 426.0 464 51.7
Actinidia31490 Actinidia chinensis HOM05D005140 ORTHO05D006288 6.8e-117 425.2 484 47.5
BcaNung06713 Brassica carinata HOM05D005140 ORTHO05D006288 6.8e-117 425.2 350 57.7
TPR.G22969 Trifolium pratense HOM05D005140 ORTHO05D006288 1.2e-116 424.5 450 50.7
AUR62007191 Chenopodium quinoa HOM05D005140 ORTHO05D006288 1.5e-116 424.1 335 60.6
Duzib068G0986 Durio zibethinus HOM05D005140 ORTHO05D006288 1.3e-115 421.0 423 52.7
BolC7t45397H Brassica oleracea HOM05D005140 ORTHO05D006288 1.7e-115 420.6 461 48.2
AUR62018812 Chenopodium quinoa HOM05D005140 ORTHO05D006288 1.7e-115 420.6 324 61.7
C07p48890 Brassica napus HOM05D005140 ORTHO05D006288 8.3e-115 418.3 461 48.2
A01p09690 Brassica napus HOM05D005140 ORTHO05D006288 1.4e-114 417.5 452 52.0
Ciclev10019303m.g Citrus clementina HOM05D005140 ORTHO05D006288 1.4e-114 417.5 452 49.1
BraA01t00912Z Brassica rapa HOM05D005140 ORTHO05D006288 7.0e-114 415.2 456 51.5
HPP92_028085 Vanilla planifolia HOM05D005140 ORTHO05D006288 2.7e-113 413.3 470 48.5
Aa31LG6G380 Aethionema arabicum HOM05D005140 ORTHO05D006288 3.9e-112 409.5 463 48.6
Nn1g00730 Nelumbo nucifera HOM05D005140 ORTHO05D006288 6.6e-112 408.7 366 55.7
Sabra01G0119900 Salix brachista HOM05D005140 ORTHO05D006288 1.1e-111 407.9 518 43.8
BcaC09g51625 Brassica carinata HOM05D005140 ORTHO05D006288 5.6e-111 405.6 455 50.5
vmacro14121 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 1.2e-110 404.4 451 49.2
CBR_g48842 Chara braunii HOM05D005140 ORTHO05D006288 4.4e-108 396.0 430 52.8
Dinv28888 Davidia involucrata HOM05D005140 ORTHO05D006288 7.5e-108 395.2 427 48.5
VMungo0239G0001 Vigna mungo HOM05D005140 ORTHO05D006288 1.7e-107 394.0 322 59.0
HPP92_022002 Vanilla planifolia HOM05D005140 ORTHO05D006288 1.6e-105 387.5 445 47.9
MBI04_g38568_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 2.1e-105 387.1 324 57.4
SGA_v2.0_scaffold6G03141 Striga asiatica HOM05D005140 ORTHO05D006288 3.5e-105 386.3 325 57.5
THA.LOC104814458 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 1.3e-104 384.4 443 48.8
Aa31LG9G15140 Aethionema arabicum HOM05D005140 ORTHO05D006288 3.0e-104 383.3 445 46.3
Nitab4.5_0012059g0010 Nicotiana tabacum HOM05D005140 ORTHO05D006288 1.5e-103 380.9 482 45.6
Zm00001eb287280 Zea mays HOM05D005140 ORTHO05D006288 3.6e-102 376.3 304 59.2
Nitab4.5_0004689g0020 Nicotiana tabacum HOM05D005140 ORTHO05D006288 2.3e-101 373.6 466 45.3
CDE04G2928 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 3.8e-99 366.3 413 48.7
FAN18G3556 Fragaria x ananassa HOM05D005140 ORTHO05D006288 2.1e-97 360.5 413 48.2
Lj9A525T29 Lonicera japonica HOM05D005140 ORTHO05D006288 2.1e-86 323.9 396 46.2
Os05g0392100 Oryza sativa ssp. japonica HOM05D005140 ORTHO05D006288 1.1e-85 321.6 364 49.5
Lj2C253G13 Lonicera japonica HOM05D005140 ORTHO05D006288 3.1e-85 320.1 471 41.4
MBI04_g46822_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 3.4e-84 316.6 394 46.2
Sc01g0007900 Simmondsia chinensis HOM05D005140 ORTHO05D006288 9.6e-79 298.5 352 47.2
BolC1t01096H Brassica oleracea HOM05D005140 ORTHO05D006288 3.6e-78 296.6 225 61.8
GSVIVG01013283001 Vitis vinifera HOM05D005140 ORTHO05D006288 3.5e-73 280.0 354 44.4
Hma1.2p1_1672F.1_g296780 Hydrangea macrophylla HOM05D005140 ORTHO05D006288 1.4e-69 268.1 333 50.5
Oeu017029.1 Olea europaea HOM05D005140 ORTHO05D006288 2.2e-67 260.8 195 60.5
CDE12G0612 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 5.5e-66 256.1 333 43.8
SHI07711 Sapria himalayana HOM05D005140 ORTHO05D006288 5.1e-64 249.6 358 41.3
Cpa.g.sc98.58 Carica papaya HOM05D005140 ORTHO05D006288 3.3e-55 220.3 267 45.3
Peaxi162Scf00715g00010 Petunia axillaris HOM05D005140 ORTHO05D006288 2.1e-49 201.1 187 55.1
Psat1g146680 Pisum sativum HOM05D005140 ORTHO05D006288 4.7e-41 173.3 109 69.7
MCO13G373 Micromonas commoda HOM05D005140 ORTHO05D006288 1.4e-40 171.8 300 35.3
Oeu017031.1 Olea europaea HOM05D005140 ORTHO05D006288 4.2e-34 150.2 131 55.0
SEGI_19334 Sequoiadendron giganteum HOM05D005140 ORTHO05D000001 4.7e-25 120.2 72 72.2
Cre07.g338400 Chlamydomonas reinhardtii HOM05D005140 ORTHO05D006288 4.4e-23 113.6 249 32.9
Oeu062963.3 Olea europaea HOM05D005140 ORTHO05D006288 1.6e-20 105.1 290 32.1
Cfa024662 Carpinus fangiana HOM05D005140 ORTHO05D006288 8.6e-19 99.4 214 32.7
MD10G1199900 Malus domestica HOM05D005140 ORTHO05D006288 3.2e-18 97.4 76 56.6
QL12p008508 Quercus lobata HOM05D005140 ORTHO05D006288 2.1e-17 94.7 174 39.1
Thecc.03G238400 Theobroma cacao HOM05D005140 ORTHO05D006288 1.8e-13 81.6 114 41.2
DCAR_016064 Daucus carota HOM05D005140 ORTHO05D006288 2.9e-11 74.3 44 75.0
GSVIVG01001794001 Vitis vinifera HOM05D005140 ORTHO05D006288 1.9e-10 71.6 75 49.3
Gohir.A08G083762 Gossypium hirsutum HOM05D005140 ORTHO05D006288 2.9e-06 57.8 28 75.0


User provided reference genes

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