Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.T085401 Populus trichocarpa HOM05D004763 ORTHO05D007492 4.8e-263 910.6 456 100.0
Potri.003G211000 Populus trichocarpa HOM05D004763 ORTHO05D007492 2.0e-256 888.6 443 100.0
Sabra03G0153800 Salix brachista HOM05D004763 ORTHO05D007492 7.5e-248 860.1 450 95.8
Sabra03G0156000 Salix brachista HOM05D004763 ORTHO05D007492 7.5e-248 860.1 450 95.8
Manes.14G014500 Manihot esculenta HOM05D004763 ORTHO05D007492 5.2e-241 837.4 443 93.5
Thecc.09G223100 Theobroma cacao HOM05D004763 ORTHO05D007492 6.8e-241 837.0 443 92.8
Gohir.D13G219100 Gossypium hirsutum HOM05D004763 ORTHO05D007492 5.7e-240 833.9 443 92.1
Gorai.013G250000 Gossypium raimondii HOM05D004763 ORTHO05D007492 1.3e-239 832.8 443 92.1
Gohir.A13G215400 Gossypium hirsutum HOM05D004763 ORTHO05D007492 2.8e-239 831.6 443 91.9
MELO3C014639.2 Cucumis melo HOM05D004763 ORTHO05D007492 3.7e-239 831.2 443 91.9
CsaV3_4G023800 Cucumis sativus L. HOM05D004763 ORTHO05D007492 2.4e-238 828.6 443 91.6
QL01p006243 Quercus lobata HOM05D004763 ORTHO05D007492 4.1e-238 827.8 443 92.1
COL.COLO4_09893 Corchorus olitorius HOM05D004763 ORTHO05D007492 7.7e-237 823.5 463 88.1
Sed0013957 Sechium edule HOM05D004763 ORTHO05D007492 3.8e-236 821.2 445 90.1
Medtr2g098510 Medicago truncatula HOM05D004763 ORTHO05D007492 1.5e-235 819.3 443 91.0
GSVIVG01025336001 Vitis vinifera HOM05D004763 ORTHO05D007492 1.5e-235 819.3 445 90.3
Atru.chr3.2503 Acer truncatum HOM05D004763 ORTHO05D007492 4.3e-235 817.8 446 90.1
TAR623G1126 Trochodendron aralioides HOM05D004763 ORTHO05D007492 4.3e-235 817.8 445 89.9
TWI34G0672 Tripterygium wilfordii HOM05D004763 ORTHO05D007492 7.3e-235 817.0 443 90.7
Prupe.6G018600 Prunus persica HOM05D004763 ORTHO05D007492 1.6e-234 815.8 443 90.3
CANSAT54G1729 Cannabis sativa HOM05D004763 ORTHO05D007492 8.0e-234 813.5 443 89.8
Sc09g0000480 Simmondsia chinensis HOM05D004763 ORTHO05D007492 8.0e-234 813.5 443 89.6
CiPaw.14G125100 Carya illinoinensis HOM05D004763 ORTHO05D007492 1.0e-233 813.1 443 90.1
Dinv36304 Davidia involucrata HOM05D004763 ORTHO05D007492 1.0e-233 813.1 445 90.1
Lj3g0020649 Lotus japonicus HOM05D004763 ORTHO05D007492 1.0e-233 813.1 443 90.3
Nn7g36058 Nelumbo nucifera HOM05D004763 ORTHO05D007492 1.0e-233 813.1 445 89.9
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 1.0e-233 813.1 443 90.1
PGR102G0325 Punica granatum HOM05D004763 ORTHO05D007492 1.4e-233 812.8 443 90.5
Ciclev10014511m.g Citrus clementina HOM05D004763 ORTHO05D007492 2.3e-233 812.0 443 90.1
RcHm_v2.0_Chr5g0078101 Rosa chinensis HOM05D004763 ORTHO05D007492 3.0e-233 811.6 443 89.6
arahy.Tifrunner.gnm1.ann1.P0K6XU Arachis hypogaea HOM05D004763 ORTHO05D007492 4.0e-233 811.2 445 89.4
FvH4_3g43550 Fragaria vesca HOM05D004763 ORTHO05D007492 5.2e-233 810.8 443 89.6
Lalb_Chr14g0372291 Lupinus albus HOM05D004763 ORTHO05D007492 5.2e-233 810.8 443 89.6
THA.LOC104816912 Tarenaya hassleriana HOM05D004763 ORTHO05D007492 5.2e-233 810.8 443 88.9
arahy.Tifrunner.gnm1.ann1.VYK1P0 Arachis hypogaea HOM05D004763 ORTHO05D007492 8.9e-233 810.1 445 89.2
arahy.Tifrunner.gnm1.ann1.GN3GFY Arachis hypogaea HOM05D004763 ORTHO05D007492 1.2e-232 809.7 445 89.2
Psat5g288480 Pisum sativum HOM05D004763 ORTHO05D007492 1.5e-232 809.3 443 89.4
Aqoxy1G00185 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 5.7e-232 807.4 445 89.2
Eucgr.B03662 Eucalyptus grandis HOM05D004763 ORTHO05D007492 5.7e-232 807.4 443 88.9
Hund22081 Selenicereus undatus HOM05D004763 ORTHO05D007492 1.3e-231 806.2 443 89.6
CSS0044360 Camellia sinensis var. sinensis HOM05D004763 ORTHO05D007492 1.7e-231 805.8 445 89.0
Glyma.13G342900 Glycine max HOM05D004763 ORTHO05D007492 1.7e-231 805.8 443 89.4
Cc01_g04070 Coffea canephora HOM05D004763 ORTHO05D007492 3.7e-231 804.7 445 88.3
Ca_01270_v3 Cicer arietinum L. HOM05D004763 ORTHO05D007492 6.4e-231 803.9 458 87.6
MD03G1021100 Malus domestica HOM05D004763 ORTHO05D007492 6.4e-231 803.9 443 89.4
Hma1.2p1_1169F.1_g263300 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 1.1e-230 803.1 445 88.3
Phvul.005G150500 Phaseolus vulgaris HOM05D004763 ORTHO05D007492 1.8e-230 802.4 443 89.6
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 1.6e-229 799.3 443 89.2
FAN16G3272 Fragaria x ananassa HOM05D004763 ORTHO05D007492 2.0e-229 798.9 453 87.2
HanXRQChr14g0451781 Helianthus annuus HOM05D004763 ORTHO05D007492 4.6e-229 797.7 445 88.1
AL3G34700 Arabidopsis lyrata HOM05D004763 ORTHO05D007492 1.0e-228 796.6 443 87.4
AT3G20780 Arabidopsis thaliana HOM05D004763 ORTHO05D007492 6.6e-228 793.9 443 87.1
EL10Ac4g10318 Beta vulgaris HOM05D004763 ORTHO05D007492 1.9e-227 792.3 443 88.3
BcaB06g26148 Brassica carinata HOM05D004763 ORTHO05D007492 1.9e-227 792.3 443 86.9
Carub.0003s2074 Capsella rubella HOM05D004763 ORTHO05D007492 2.5e-227 792.0 443 86.9
Cpa.g.sc84.111 Carica papaya HOM05D004763 ORTHO05D007492 2.5e-227 792.0 471 84.1
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 4.3e-227 791.2 446 87.9
Thhalv10020214m.g Eutrema salsugineum HOM05D004763 ORTHO05D007492 5.6e-227 790.8 443 86.7
BcaC05g28282 Brassica carinata HOM05D004763 ORTHO05D007492 9.5e-227 790.0 443 86.5
Sp3g18800 Schrenkiella parvula HOM05D004763 ORTHO05D007492 2.1e-226 788.9 443 86.2
C05p43300 Brassica napus HOM05D004763 ORTHO05D007492 4.7e-226 787.7 443 86.0
Rhsim01G0189300 Rhododendron simsii HOM05D004763 ORTHO05D007492 1.0e-225 786.6 478 83.3
ECA238G4453 Erigeron canadensis HOM05D004763 ORTHO05D007492 1.8e-225 785.8 445 87.4
arahy.Tifrunner.gnm1.ann1.X75IXN Arachis hypogaea HOM05D004763 ORTHO05D007492 5.2e-225 784.3 483 81.6
Duzib150G1218 Durio zibethinus HOM05D004763 ORTHO05D007492 5.2e-225 784.3 460 86.1
Solyc01g014490.4 Solanum lycopersicum HOM05D004763 ORTHO05D007492 5.2e-225 784.3 443 86.7
AUR62019250 Chenopodium quinoa HOM05D004763 ORTHO05D007492 6.8e-225 783.9 443 87.8
PSO339G3791 Papaver somniferum HOM05D004763 ORTHO05D007492 6.8e-225 783.9 443 87.6
Sopen01g009200 Solanum pennellii HOM05D004763 ORTHO05D007492 1.2e-224 783.1 443 86.5
SGA_v2.0_scaffold1G00797 Striga asiatica HOM05D004763 ORTHO05D007492 1.2e-224 783.1 443 86.2
A05p28000 Brassica napus HOM05D004763 ORTHO05D007492 2.6e-224 781.9 453 84.5
BolC5t33062H Brassica oleracea HOM05D004763 ORTHO05D007492 2.9e-223 778.5 443 85.8
BraA05t21683Z Brassica rapa HOM05D004763 ORTHO05D007492 4.1e-222 774.6 461 83.1
Os09g0279600 Oryza sativa ssp. japonica HOM05D004763 ORTHO05D007492 4.1e-222 774.6 443 84.2
CDE04G0998 Ceratophyllum demersum HOM05D004763 ORTHO05D007492 1.2e-221 773.1 445 84.9
ATR0605G091 Amborella trichopoda HOM05D004763 ORTHO05D007492 2.7e-221 771.9 445 85.4
Migut.D00558 Erythranthe guttata HOM05D004763 ORTHO05D007492 2.7e-221 771.9 443 85.3
Nitab4.5_0006575g0020 Nicotiana tabacum HOM05D004763 ORTHO05D007492 2.7e-221 771.9 443 86.9
Aa31LG8G7590 Aethionema arabicum HOM05D004763 ORTHO05D007492 1.7e-220 769.2 472 80.9
Peaxi162Scf00773g00119 Petunia axillaris HOM05D004763 ORTHO05D007492 1.7e-220 769.2 450 84.4
HPP92_020536 Vanilla planifolia HOM05D004763 ORTHO05D007492 2.3e-220 768.8 444 85.1
CARHR096610 Cardamine hirsuta HOM05D004763 ORTHO05D007492 1.4e-214 749.6 443 83.5
Nitab4.5_0003069g0050 Nicotiana tabacum HOM05D004763 ORTHO05D007492 2.3e-212 742.3 453 83.7
AagrBONN_evm.TU.Sc2ySwM_344.3405 Anthoceros agrestis HOM05D004763 ORTHO05D007492 9.2e-206 720.3 443 77.9
Aqoxy381s001 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 1.9e-203 712.6 458 80.1
Pp3c22_12720 Physcomitrium patens HOM05D004763 ORTHO05D007492 9.6e-203 710.3 445 78.2
Lsat_1_v5_gn_2_101121 Lactuca sativa HOM05D004763 ORTHO05D007492 4.7e-202 708.0 462 77.9
SMO116G0144 Selaginella moellendorffii HOM05D004763 ORTHO05D007492 1.2e-200 703.4 451 77.2
Hma1.2p1_1169F.1_g263310 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 1.3e-199 699.9 374 90.6
CBR_g31022 Chara braunii HOM05D004763 ORTHO05D007492 3.5e-197 691.8 443 75.4
Mapoly0042s0060 Marchantia polymorpha HOM05D004763 ORTHO05D007492 2.1e-194 682.6 443 75.8
Actinidia39377 Actinidia chinensis HOM05D004763 ORTHO05D007492 1.2e-189 666.8 447 77.0
Ah.04g161760 Amaranthus hybridus HOM05D004763 ORTHO05D007492 2.5e-187 659.1 443 76.7
FAN21G2003 Fragaria x ananassa HOM05D004763 ORTHO05D007492 4.5e-184 648.3 443 75.6
DCAR_024396 Daucus carota HOM05D004763 ORTHO05D007492 2.8e-178 629.0 445 72.6
Lj4g0010878 Lotus japonicus HOM05D004763 ORTHO05D007492 2.8e-178 629.0 443 75.2
SEGI_32015 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 2.0e-176 622.9 372 81.5
Zm00001eb308780 Zea mays HOM05D004763 ORTHO05D007492 1.6e-165 586.6 327 85.3
FAN11G2145 Fragaria x ananassa HOM05D004763 ORTHO05D007492 6.1e-165 584.7 480 65.8
FAN11G0713 Fragaria x ananassa HOM05D004763 ORTHO05D007492 1.8e-161 573.2 480 64.8
Lsat_1_v5_gn_1_127001 Lactuca sativa HOM05D004763 ORTHO05D007492 1.3e-151 540.4 446 62.1
Cre01.g019750 Chlamydomonas reinhardtii HOM05D004763 ORTHO05D007492 1.8e-148 530.0 453 59.6
ClCG02G023620 Citrullus lanatus HOM05D004763 ORTHO05D007492 4.7e-141 505.4 275 90.2
MCO09G243 Micromonas commoda HOM05D004763 ORTHO05D007492 4.4e-139 498.8 446 58.3
MBI01_g15753_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D007492 2.7e-136 489.6 275 87.3
PRCOL_00005940 Prasinoderma coloniale HOM05D004763 ORTHO05D007492 4.4e-131 472.2 453 55.4
CAN.G646.1 Capsicum annuum HOM05D004763 ORTHO05D007492 2.0e-128 463.4 274 83.2
PGSC0003DMG401029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 5.5e-126 455.3 295 77.6
Lj1A366T12 Lonicera japonica HOM05D004763 ORTHO05D007492 1.5e-110 404.1 307 70.0
Lsat_1_v5_gn_1_127121 Lactuca sativa HOM05D004763 ORTHO05D007492 3.5e-104 382.9 451 50.1
Lsat_1_v5_gn_1_126981 Lactuca sativa HOM05D004763 ORTHO05D007492 1.2e-88 331.3 400 48.2
Lju1319A4T15 Lonicera japonica HOM05D004763 ORTHO05D007492 1.9e-86 323.9 169 92.9
CAN.G442.1 Capsicum annuum HOM05D004763 ORTHO05D007492 4.3e-86 322.8 169 92.3
PGSC0003DMG402029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 1.6e-85 320.9 167 92.2
Lj1C366G5 Lonicera japonica HOM05D004763 ORTHO05D007492 2.9e-82 310.1 173 89.6
TPR.G29742 Trifolium pratense HOM05D004763 ORTHO05D007492 1.0e-50 205.3 180 61.1
Oeu036968.1 Olea europaea HOM05D004763 ORTHO05D007492 8.5e-50 202.2 104 88.5
Lsat_1_v5_gn_1_126941 Lactuca sativa HOM05D004763 ORTHO05D007492 2.4e-44 184.1 131 67.2
Lsat_1_v5_gn_1_127201 Lactuca sativa HOM05D004763 ORTHO05D007492 3.7e-37 160.2 136 59.6
MBI09_g40619_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D019264 2.4e-36 157.5 87 88.5
MBI04_g09599_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 3.1e-36 157.1 87 88.5
MBI02_g24793_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 2.6e-35 154.1 87 87.4
Aa31LG8G7550 Aethionema arabicum HOM05D004763 ORTHO05D007492 7.7e-35 152.5 466 33.7
Actinidia06319 Actinidia chinensis HOM05D004763 ORTHO05D007492 8.5e-34 149.1 78 91.0
SEGI_39045 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 1.1e-33 148.7 78 88.5
Lsat_1_v5_gn_1_127161 Lactuca sativa HOM05D004763 ORTHO05D007492 4.7e-32 143.3 94 74.5
Thecc.03G073800 Theobroma cacao HOM05D004763 ORTHO05D019264 4.7e-32 143.3 107 69.2
Lju1319C4G3 Lonicera japonica HOM05D004763 ORTHO05D014896 1.6e-24 118.2 173 45.7
PGSC0003DMG401017076 Solanum tuberosum HOM05D004763 ORTHO05D026177 2.7e-24 117.5 113 54.0
TPR.G29743 Trifolium pratense HOM05D004763 ORTHO05D007492 2.0e-22 111.3 96 62.5
Lsat_1_v5_gn_3_118680 Lactuca sativa HOM05D004763 ORTHO05D007492 5.9e-19 99.8 55 87.3
Lju1319A4T14 Lonicera japonica HOM05D004763 ORTHO05D019264 7.7e-19 99.4 54 88.9
Lsat_1_v5_gn_1_125620 Lactuca sativa HOM05D004763 ORTHO05D007492 8.8e-15 85.9 197 34.5
Solyc11g028310.3 Solanum lycopersicum HOM05D004763 ORTHO05D026177 9.1e-12 75.9 63 66.7
PGSC0003DMG400026817 Solanum tuberosum HOM05D004763 ORTHO05D026177 1.6e-11 75.1 71 62.0
Eucgr.B03660 Eucalyptus grandis HOM05D004763 ORTHO05D007492 2.7e-11 74.3 37 94.6
Lsat_1_v5_gn_1_126960 Lactuca sativa HOM05D004763 ORTHO05D012314 7.7e-11 72.8 68 51.5
PGSC0003DMG400019106 Solanum tuberosum HOM05D004763 ORTHO05D007492 6.6e-10 69.7 37 86.5
Solyc11g028340.3 Solanum lycopersicum HOM05D004763 ORTHO05D019264 8.0e-08 62.8 43 65.1
Solyc11g028350.1 Solanum lycopersicum HOM05D004763 ORTHO05D019264 7.5e-06 56.2 40 62.5
Solyc12g036030.1 Solanum lycopersicum HOM05D004763 ORTHO05D026177 9.8e-06 55.8 87 42.5


User provided reference genes

Program Settings