Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.017G072580 Populus trichocarpa HOM05D003353 ORTHO05D003751 0.0e+00 1956.4 969 100.0
Sabra17G0060500 Salix brachista HOM05D003353 ORTHO05D003751 0.0e+00 1663.7 971 86.5
Manes.15G182800 Manihot esculenta HOM05D003353 ORTHO05D003751 0.0e+00 1112.4 1033 58.7
QL02p076799 Quercus lobata HOM05D003353 ORTHO05D003751 5.0e-286 988.0 1003 53.0
Cfa007435 Carpinus fangiana HOM05D003353 ORTHO05D003751 3.3e-277 958.7 1020 52.1
Atru.chr6.2192 Acer truncatum HOM05D003353 ORTHO05D003751 1.8e-275 953.0 1001 53.2
Thecc.04G008000 Theobroma cacao HOM05D003353 ORTHO05D003751 1.8e-275 953.0 1015 53.6
MD09G1035200 Malus domestica HOM05D003353 ORTHO05D003751 6.4e-273 944.5 999 53.0
Prupe.3G283100 Prunus persica HOM05D003353 ORTHO05D003751 1.9e-272 943.0 999 53.1
FvH4_6g50560 Fragaria vesca HOM05D003353 ORTHO05D003751 7.8e-271 937.6 1010 51.5
Duzib147G1510 Durio zibethinus HOM05D003353 ORTHO05D003751 1.0e-270 937.2 1016 52.6
Haze_14661 Corylus avellana HOM05D003353 ORTHO05D003751 2.3e-270 936.0 1090 48.9
FAN02G2799 Fragaria x ananassa HOM05D003353 ORTHO05D003751 5.6e-269 931.4 1004 51.2
FAN14G4206 Fragaria x ananassa HOM05D003353 ORTHO05D003751 2.1e-268 929.5 1010 51.1
MD17G1035500 Malus domestica HOM05D003353 ORTHO05D003751 2.1e-268 929.5 999 52.5
CiPaw.04G024200 Carya illinoinensis HOM05D003353 ORTHO05D003751 2.8e-268 929.1 1017 51.2
FAN09G4608 Fragaria x ananassa HOM05D003353 ORTHO05D003751 5.8e-266 921.4 1004 51.0
CiPaw.03G037100 Carya illinoinensis HOM05D003353 ORTHO05D003751 5.4e-264 914.8 996 51.6
TWI36G0997 Tripterygium wilfordii HOM05D003353 ORTHO05D003751 6.0e-263 911.4 1005 50.9
COL.COLO4_28936 Corchorus olitorius HOM05D003353 ORTHO05D003751 5.6e-261 904.8 1002 52.5
TWI12G0214 Tripterygium wilfordii HOM05D003353 ORTHO05D003751 1.4e-259 900.2 1000 51.0
Gohir.D09G025300 Gossypium hirsutum HOM05D003353 ORTHO05D003751 1.7e-257 893.3 1018 50.5
Gohir.A09G026000 Gossypium hirsutum HOM05D003353 ORTHO05D003751 9.3e-256 887.5 1018 50.6
Gorai.006G029600 Gossypium raimondii HOM05D003353 ORTHO05D003751 3.0e-254 882.5 1018 50.0
RcHm_v2.0_Chr2g0171081 Rosa chinensis HOM05D003353 ORTHO05D003751 2.2e-249 866.3 916 52.1
CANSAT64G0328 Cannabis sativa HOM05D003353 ORTHO05D003751 9.3e-248 860.9 1007 48.7
Cpa.g.sc215.7 Carica papaya HOM05D003353 ORTHO05D003751 1.6e-244 850.1 1015 49.0
TAR629G0276 Trochodendron aralioides HOM05D003353 ORTHO05D003751 1.6e-244 850.1 1004 48.5
TAR371G0580 Trochodendron aralioides HOM05D003353 ORTHO05D003751 1.3e-241 840.5 1031 48.2
Lj2g0012220 Lotus japonicus HOM05D003353 ORTHO05D003751 3.8e-241 839.0 1000 48.7
Phvul.004G017600 Phaseolus vulgaris HOM05D003353 ORTHO05D003751 3.7e-228 795.8 995 47.3
CsaV3_3G042270 Cucumis sativus L. HOM05D003353 ORTHO05D003751 6.3e-228 795.0 1011 46.5
Nn3g16906 Nelumbo nucifera HOM05D003353 ORTHO05D003751 8.5e-225 784.6 1017 46.0
Glyma.19G010200 Glycine max HOM05D003353 ORTHO05D003751 1.1e-224 784.3 995 47.2
Glyma.13G170000 Glycine max HOM05D003353 ORTHO05D003751 1.4e-224 783.9 992 47.6
Lalb_Chr21g0319411 Lupinus albus HOM05D003353 ORTHO05D003751 9.4e-224 781.2 987 46.8
Nn4g22812 Nelumbo nucifera HOM05D003353 ORTHO05D003751 2.1e-223 780.0 1032 45.4
Sed0022584 Sechium edule HOM05D003353 ORTHO05D003751 4.7e-223 778.9 995 47.2
Psat1g059480 Pisum sativum HOM05D003353 ORTHO05D003751 8.8e-222 774.6 1000 46.4
Lalb_Chr06g0176091 Lupinus albus HOM05D003353 ORTHO05D003751 3.3e-221 772.7 980 46.4
THA.LOC104822384 Tarenaya hassleriana HOM05D003353 ORTHO05D003751 5.7e-221 771.9 1036 46.3
Lalb_Chr02g0160231 Lupinus albus HOM05D003353 ORTHO05D003751 1.7e-220 770.4 977 46.3
ClCG10G014330 Citrullus lanatus HOM05D003353 ORTHO05D003751 3.1e-219 766.1 1011 45.1
Medtr6g007650 Medicago truncatula HOM05D003353 ORTHO05D003751 9.1e-219 764.6 984 46.0
arahy.Tifrunner.gnm1.ann1.S45US4 Arachis hypogaea HOM05D003353 ORTHO05D003751 1.7e-217 760.4 1001 46.3
Dinv35052 Davidia involucrata HOM05D003353 ORTHO05D003751 2.3e-214 750.0 943 46.0
GSVIVG01032492001 Vitis vinifera HOM05D003353 ORTHO05D003751 3.1e-211 739.6 983 45.2
AL3G10710 Arabidopsis lyrata HOM05D003353 ORTHO05D003751 1.9e-208 730.3 1005 45.4
BolC1t05958H Brassica oleracea HOM05D003353 ORTHO05D003751 1.4e-206 724.2 992 45.5
TPR.G2281 Trifolium pratense HOM05D003353 ORTHO05D003751 1.8e-206 723.8 984 45.5
PGR142G1415 Punica granatum HOM05D003353 ORTHO05D003751 2.3e-206 723.4 1011 43.9
AT3G01460 Arabidopsis thaliana HOM05D003353 ORTHO05D003751 3.0e-206 723.0 1000 44.9
BcaC09g47659 Brassica carinata HOM05D003353 ORTHO05D003751 1.2e-205 721.1 992 45.3
MELO3C009946.2 Cucumis melo HOM05D003353 ORTHO05D003751 4.4e-205 719.2 1002 44.4
BraA01t04666Z Brassica rapa HOM05D003353 ORTHO05D003751 9.7e-205 718.0 989 45.6
Aa31LG5G10560 Aethionema arabicum HOM05D003353 ORTHO05D003751 1.3e-204 717.6 1001 45.2
BNapus_Darmor_BZH_scaffold_133p00020 Brassica napus HOM05D003353 ORTHO05D003751 1.3e-204 717.6 989 45.6
Carub.0003s0064 Capsella rubella HOM05D003353 ORTHO05D003751 2.2e-201 706.8 1013 43.4
Thhalv10019872m.g Eutrema salsugineum HOM05D003353 ORTHO05D003751 8.5e-201 704.9 1004 44.1
Hund12469 Selenicereus undatus HOM05D003353 ORTHO05D003751 4.2e-200 702.6 1021 43.2
Thhalv10022520m.g Eutrema salsugineum HOM05D003353 ORTHO05D003751 2.7e-199 699.9 996 44.2
Sp3g00610 Schrenkiella parvula HOM05D003353 ORTHO05D003751 4.4e-197 692.6 997 43.5
EL10Ac2g03352 Beta vulgaris HOM05D003353 ORTHO05D003751 1.8e-195 687.2 1015 43.8
Dinv24865 Davidia involucrata HOM05D003353 ORTHO05D003751 1.2e-194 684.5 1018 42.8
VMungo0464G0152 Vigna mungo HOM05D003353 ORTHO05D003751 4.2e-192 676.0 861 46.9
BcaB04g21418 Brassica carinata HOM05D003353 ORTHO05D003751 9.5e-192 674.9 992 43.9
BolC5t35150H Brassica oleracea HOM05D003353 ORTHO05D003751 3.1e-187 659.8 1033 42.6
A05p44550 Brassica napus HOM05D003353 ORTHO05D003751 7.8e-186 655.2 1031 41.9
Dinv15308 Davidia involucrata HOM05D003353 ORTHO05D003751 7.8e-186 655.2 1033 40.9
BraA05t23202Z Brassica rapa HOM05D003353 ORTHO05D003751 1.0e-185 654.8 1031 41.9
C09p75140 Brassica napus HOM05D003353 ORTHO05D003751 1.1e-184 651.4 1033 42.0
Eucgr.I01818 Eucalyptus grandis HOM05D003353 ORTHO05D003751 1.0e-182 644.8 794 45.7
AUR62032109 Chenopodium quinoa HOM05D003353 ORTHO05D003751 2.2e-180 637.1 988 42.0
AUR62042408 Chenopodium quinoa HOM05D003353 ORTHO05D003751 3.7e-180 636.3 1010 41.5
ATR0691G050 Amborella trichopoda HOM05D003353 ORTHO05D003751 4.4e-173 612.8 1028 39.6
Aqoxy3G02993 Aquilegia oxysepala HOM05D003353 ORTHO05D003751 5.8e-165 585.9 998 39.3
CSS0024625 Camellia sinensis var. sinensis HOM05D003353 ORTHO05D003751 3.2e-163 580.1 991 38.2
PSO063G6215 Papaver somniferum HOM05D003353 ORTHO05D003751 1.5e-160 571.2 1020 37.4
PSO832G1186 Papaver somniferum HOM05D003353 ORTHO05D003751 2.5e-160 570.5 1018 37.4
Manes.12G029600 Manihot esculenta HOM05D003353 ORTHO05D003751 2.1e-159 567.4 880 40.6
HPP92_008854 Vanilla planifolia HOM05D003353 ORTHO05D003751 2.8e-159 567.0 1073 36.4
Lj7A591T75 Lonicera japonica HOM05D003353 ORTHO05D003751 3.6e-159 566.6 840 41.4
DCAR_021679 Daucus carota HOM05D003353 ORTHO05D003751 7.6e-157 558.9 1019 36.7
Cfa009137 Carpinus fangiana HOM05D003353 ORTHO05D003751 7.1e-147 525.8 883 39.3
DCAR_031098 Daucus carota HOM05D003353 ORTHO05D003751 9.3e-147 525.4 1001 36.1
Haze_12169 Corylus avellana HOM05D003353 ORTHO05D003751 4.6e-146 523.1 895 38.7
Cc11_g14600 Coffea canephora HOM05D003353 ORTHO05D003751 7.8e-146 522.3 1017 35.8
Rhsim10G0023100 Rhododendron simsii HOM05D003353 ORTHO05D003751 3.0e-145 520.4 970 36.9
SHI25551 Sapria himalayana HOM05D003353 ORTHO05D003751 1.5e-144 518.1 668 45.1
Rhsim12G0121100 Rhododendron simsii HOM05D003353 ORTHO05D003751 1.3e-143 515.0 927 37.2
QL03p061451 Quercus lobata HOM05D003353 ORTHO05D003751 2.8e-143 513.8 894 38.1
Actinidia15041 Actinidia chinensis HOM05D003353 ORTHO05D003751 1.4e-142 511.5 889 38.0
GSVIVG01020232001 Vitis vinifera HOM05D003353 ORTHO05D003751 2.7e-138 497.3 617 46.2
DCAR_007093 Daucus carota HOM05D003353 ORTHO05D003751 1.8e-137 494.6 994 36.0
CDE10G0339 Ceratophyllum demersum HOM05D003353 ORTHO05D003751 2.1e-135 487.6 989 35.1
HanXRQChr12g0368561 Helianthus annuus HOM05D003353 ORTHO05D003751 5.3e-134 483.0 953 35.2
Lsat_1_v5_gn_8_157680 Lactuca sativa HOM05D003353 ORTHO05D003751 3.4e-133 480.3 955 35.3
BNapus_Darmor_BZH_scaffold_119p00030 Brassica napus HOM05D003353 ORTHO05D003751 4.5e-133 479.9 614 46.7
BNapus_Darmor_BZH_scaffold_97p00400 Brassica napus HOM05D003353 ORTHO05D003751 4.5e-133 479.9 614 46.7
Oeu056394.4 Olea europaea HOM05D003353 ORTHO05D003751 7.6e-133 479.2 843 37.1
CAN.G1420.2 Capsicum annuum HOM05D003353 ORTHO05D003751 6.4e-132 476.1 773 38.8
ECA233G2073 Erigeron canadensis HOM05D003353 ORTHO05D003751 1.1e-131 475.3 958 35.1
Nitab4.5_0000113g0210 Nicotiana tabacum HOM05D003353 ORTHO05D003751 1.1e-131 475.3 778 37.9
Ciclev10030471m.g Citrus clementina HOM05D003353 ORTHO05D003751 7.9e-130 469.2 876 36.8
MSTRG.7892 Avicennia marina HOM05D003353 ORTHO05D003751 3.9e-129 466.8 977 33.3
Nitab4.5_0002579g0080 Nicotiana tabacum HOM05D003353 ORTHO05D003751 3.9e-129 466.8 777 37.5
Sopen05g001650 Solanum pennellii HOM05D003353 ORTHO05D003751 1.6e-127 461.5 1006 33.0
Migut.L01407 Erythranthe guttata HOM05D003353 ORTHO05D003751 2.1e-127 461.1 953 34.3
Peaxi162Scf00338g00002 Petunia axillaris HOM05D003353 ORTHO05D003751 1.8e-126 458.0 773 38.0
Atru.chr11.2012 Acer truncatum HOM05D003353 ORTHO05D003751 1.5e-125 454.9 723 40.5
SEGI_35053 Sequoiadendron giganteum HOM05D003353 ORTHO05D003751 4.5e-125 453.4 1072 33.3
Ciclev10014026m.g Citrus clementina HOM05D003353 ORTHO05D003751 7.6e-125 452.6 496 52.2
SGA_v2.0_scaffold165G38252 Striga asiatica HOM05D003353 ORTHO05D003751 3.2e-123 447.2 949 34.0
vmacro16257 Vaccinium macrocarpon HOM05D003353 ORTHO05D003751 1.1e-118 432.2 833 35.3
Lj6C805G5 Lonicera japonica HOM05D003353 ORTHO05D003751 1.2e-117 428.7 741 38.6
Lsat_1_v5_gn_4_6960 Lactuca sativa HOM05D003353 ORTHO05D003751 1.0e-105 389.0 844 30.7
ECA199G0007 Erigeron canadensis HOM05D003353 ORTHO05D003751 1.4e-105 388.7 932 30.9
HanXRQChr17g0569791 Helianthus annuus HOM05D003353 ORTHO05D003751 1.7e-103 381.7 924 30.2
Actinidia06029 Actinidia chinensis HOM05D003353 ORTHO05D003751 8.2e-103 379.4 507 44.6
Sc06g0001590 Simmondsia chinensis HOM05D003353 ORTHO05D003751 1.9e-99 368.2 514 43.4
vmacro05815 Vaccinium macrocarpon HOM05D003353 ORTHO05D003751 3.1e-94 350.9 445 46.3
CSS0032060 Camellia sinensis var. sinensis HOM05D003353 ORTHO05D003751 8.5e-92 342.8 715 34.1
Ah.16g106640 Amaranthus hybridus HOM05D003353 ORTHO05D003751 1.4e-89 335.5 501 43.7
Zm00001eb206240 Zea mays HOM05D003353 ORTHO05D003751 1.2e-74 285.8 798 29.1
FAN05G2549 Fragaria x ananassa HOM05D003353 ORTHO05D003751 6.8e-73 280.0 299 53.5
FAN09G2719 Fragaria x ananassa HOM05D003353 ORTHO05D022659 3.4e-72 277.7 295 53.2
Lsat_1_v5_gn_4_182161 Lactuca sativa HOM05D003353 ORTHO05D003751 1.0e-65 256.1 609 32.2
unitig_26.g10338 Utricularia gibba HOM05D003353 ORTHO05D003751 6.4e-63 246.9 943 25.8
Lsat_1_v5_gn_4_181301 Lactuca sativa HOM05D003353 ORTHO05D003751 1.4e-62 245.7 606 31.4
Sc06g0001600 Simmondsia chinensis HOM05D003353 ORTHO05D003751 2.0e-56 225.3 404 39.9
Oeu003445.1 Olea europaea HOM05D003353 ORTHO05D003751 1.7e-55 222.2 411 37.0
Mapoly0064s0056 Marchantia polymorpha HOM05D003353 ORTHO05D003751 3.9e-52 211.1 892 27.0
TPR.G2296 Trifolium pratense HOM05D003353 ORTHO05D003751 5.1e-44 184.1 270 44.4
Actinidia13514 Actinidia chinensis HOM05D003353 ORTHO05D003751 6.6e-44 183.7 575 30.8
SHI25555 Sapria himalayana HOM05D003353 ORTHO05D003751 3.0e-36 158.3 139 61.9
Carub.0001s0468 Capsella rubella HOM05D003353 ORTHO05D003751 3.9e-36 157.9 207 46.9
VMungo0464G0255 Vigna mungo HOM05D003353 ORTHO05D003751 3.6e-34 151.4 155 53.5
AagrBONN_evm.TU.Sc2ySwM_228.4332 Anthoceros agrestis HOM05D003353 ORTHO05D003751 8.1e-34 150.2 808 24.8
Aqoxy3G00985 Aquilegia oxysepala HOM05D003353 ORTHO05D003751 3.4e-32 144.8 266 35.3
Ca_04206_v3 Cicer arietinum L. HOM05D003353 ORTHO05D003751 1.9e-30 139.0 144 52.8
Lj7C591T5 Lonicera japonica HOM05D003353 ORTHO05D003751 4.5e-24 117.9 159 46.5
Carub.0001s0467 Capsella rubella HOM05D003353 ORTHO05D003751 2.7e-21 108.6 187 39.0
Lalb_Chr14g0362821 Lupinus albus HOM05D003353 ORTHO05D003751 2.3e-20 105.5 238 31.9
Pp3c5_19640 Physcomitrium patens HOM05D003353 ORTHO05D003751 8.7e-20 103.6 325 29.8
Pp3c1_860 Physcomitrium patens HOM05D003353 ORTHO05D003751 5.6e-19 100.9 324 29.6
Pp3c6_8120 Physcomitrium patens HOM05D003353 ORTHO05D003751 3.7e-18 98.2 333 27.3
Lalb_Chr14g0362801 Lupinus albus HOM05D003353 ORTHO05D003751 3.1e-17 95.1 116 42.2
Pp3c2_35750 Physcomitrium patens HOM05D003353 ORTHO05D003751 3.1e-17 95.1 333 28.8
Lalb_Chr02g0160031 Lupinus albus HOM05D003353 ORTHO05D003751 1.0e-15 90.1 67 68.7
ECA232G4683 Erigeron canadensis HOM05D003353 ORTHO05D003751 3.8e-15 88.2 270 26.3
Hma1.2p1_0802F.1_g220460 Hydrangea macrophylla HOM05D003353 ORTHO05D003751 8.4e-15 87.0 131 39.7
HanXRQChr09g0266041 Helianthus annuus HOM05D003353 ORTHO05D003751 9.3e-14 83.6 276 27.5
Os02g0192300 Oryza sativa ssp. japonica HOM05D003353 ORTHO05D003751 2.8e-10 72.0 113 38.1
QL05p070069 Quercus lobata HOM05D003353 ORTHO05D003751 4.8e-10 71.2 125 40.0
AagrBONN_evm.TU.Sc2ySwM_228.838 Anthoceros agrestis HOM05D003353 ORTHO05D003751 2.4e-09 68.9 301 26.6
AagrBONN_evm.TU.Sc2ySwM_228.4424 Anthoceros agrestis HOM05D003353 ORTHO05D003751 5.3e-09 67.8 271 26.9
MCO03G197 Micromonas commoda HOM05D003353 ORTHO05D003751 1.3e-07 63.2 231 25.5
Lsat_1_v5_gn_4_181221 Lactuca sativa HOM05D003353 ORTHO05D003751 2.2e-07 62.4 211 29.4
Migut.H00131 Erythranthe guttata HOM05D003353 ORTHO05D003751 2.9e-07 62.0 123 37.4
Dinv33502 Davidia involucrata HOM05D003353 ORTHO05D003751 5.0e-07 61.2 97 38.1
Migut.H00129 Erythranthe guttata HOM05D003353 ORTHO05D003751 9.3e-06 57.0 98 38.8


User provided reference genes

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