Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.015G010900 Populus trichocarpa HOM05D005824 ORTHO05D007029 0.0e+00 1355.5 714 100.0
Sabra15G0009000 Salix brachista HOM05D005824 ORTHO05D007029 0.0e+00 1214.1 734 88.7
Manes.06G027100 Manihot esculenta HOM05D005824 ORTHO05D007029 6.1e-220 768.1 715 61.0
QL07p026733 Quercus lobata HOM05D005824 ORTHO05D007029 3.1e-216 755.7 719 58.4
GSVIVG01031305001 Vitis vinifera HOM05D005824 ORTHO05D007029 1.0e-211 740.7 723 56.2
CiPaw.10G020000 Carya illinoinensis HOM05D005824 ORTHO05D007029 3.9e-211 738.8 720 57.6
Lalb_Chr02g0154321 Lupinus albus HOM05D005824 ORTHO05D007029 3.0e-203 712.6 727 55.2
Cfa020078 Carpinus fangiana HOM05D005824 ORTHO05D007029 4.1e-200 702.2 719 57.3
Dinv24497 Davidia involucrata HOM05D005824 ORTHO05D007029 4.1e-200 702.2 720 53.9
CSS0029355 Camellia sinensis var. sinensis HOM05D005824 ORTHO05D007029 7.7e-199 698.0 723 53.5
arahy.Tifrunner.gnm1.ann1.S86EGP Arachis hypogaea HOM05D005824 ORTHO05D007029 2.2e-198 696.4 730 54.5
arahy.Tifrunner.gnm1.ann1.E5V6X9 Arachis hypogaea HOM05D005824 ORTHO05D007029 1.5e-197 693.7 734 54.2
Lj5g0026124 Lotus japonicus HOM05D005824 ORTHO05D007029 8.0e-196 688.0 732 54.0
Lj3g0001001 Lotus japonicus HOM05D005824 ORTHO05D007029 1.4e-195 687.2 732 53.7
Glyma.02G192500 Glycine max HOM05D005824 ORTHO05D007029 5.2e-195 685.3 729 53.6
VMungo0720G2244 Vigna mungo HOM05D005824 ORTHO05D007029 1.5e-194 683.7 728 53.4
Cc02_g35570 Coffea canephora HOM05D005824 ORTHO05D007029 4.4e-194 682.2 775 50.6
Psat6g118640 Pisum sativum HOM05D005824 ORTHO05D007029 1.7e-193 680.2 744 52.2
Rhsim11G0099700 Rhododendron simsii HOM05D005824 ORTHO05D007029 1.7e-193 680.2 714 54.8
Cpa.g.sc48.209 Carica papaya HOM05D005824 ORTHO05D007029 1.2e-191 674.1 728 51.9
TPR.G12910 Trifolium pratense HOM05D005824 ORTHO05D007029 1.2e-191 674.1 722 52.4
Medtr1g055080 Medicago truncatula HOM05D005824 ORTHO05D007029 5.9e-191 671.8 725 52.0
TPR.G21237 Trifolium pratense HOM05D005824 ORTHO05D007029 2.2e-190 669.8 738 51.6
Glyma.10G084300 Glycine max HOM05D005824 ORTHO05D007029 6.5e-190 668.3 725 52.4
TWI38G0226 Tripterygium wilfordii HOM05D005824 ORTHO05D007029 4.7e-188 662.1 726 52.1
Thecc.09G352900 Theobroma cacao HOM05D005824 ORTHO05D007029 1.5e-186 657.1 727 52.3
Ca_11665_v3 Cicer arietinum L. HOM05D005824 ORTHO05D007029 2.2e-185 653.3 723 51.7
Haze_20113 Corylus avellana HOM05D005824 ORTHO05D007029 2.8e-185 652.9 783 51.6
Phvul.007G265900 Phaseolus vulgaris HOM05D005824 ORTHO05D007029 3.5e-183 646.0 728 52.1
Oeu061927.1 Olea europaea HOM05D005824 ORTHO05D007029 1.3e-182 644.0 769 49.8
Eucgr.B01798 Eucalyptus grandis HOM05D005824 ORTHO05D007029 1.5e-181 640.6 715 51.6
Gorai.005G200700 Gossypium raimondii HOM05D005824 ORTHO05D007029 9.4e-181 637.9 732 51.4
Atru.chr12.1601 Acer truncatum HOM05D005824 ORTHO05D007029 3.6e-180 636.0 716 52.8
TAR362G0448 Trochodendron aralioides HOM05D005824 ORTHO05D007029 3.6e-180 636.0 719 52.0
Gohir.A03G155800 Gossypium hirsutum HOM05D005824 ORTHO05D007029 1.0e-179 634.4 734 51.1
Lj5A322T66 Lonicera japonica HOM05D005824 ORTHO05D007029 6.8e-179 631.7 680 51.9
Sopen01g044470 Solanum pennellii HOM05D005824 ORTHO05D007029 8.8e-179 631.3 733 49.8
SalBow7G3942 Salvia bowleyana HOM05D005824 ORTHO05D007029 1.2e-178 630.9 718 49.2
AUR62006798 Chenopodium quinoa HOM05D005824 ORTHO05D007029 3.7e-177 625.9 771 48.5
Sc09g0002470 Simmondsia chinensis HOM05D005824 ORTHO05D007029 4.8e-177 625.5 756 47.9
Prupe.6G306900 Prunus persica HOM05D005824 ORTHO05D007029 5.4e-176 622.1 768 48.7
Aqoxy2G02580 Aquilegia oxysepala HOM05D005824 ORTHO05D007029 2.0e-175 620.2 720 49.6
AUR62000450 Chenopodium quinoa HOM05D005824 ORTHO05D007029 2.7e-175 619.8 780 48.5
THA.LOC104821746 Tarenaya hassleriana HOM05D005824 ORTHO05D007029 2.7e-175 619.8 736 48.9
MSTRG.15631 Avicennia marina HOM05D005824 ORTHO05D007029 7.7e-175 618.2 716 50.3
vmacro01596 Vaccinium macrocarpon HOM05D005824 ORTHO05D007029 1.3e-174 617.5 709 49.9
Nitab4.5_0009690g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 1.9e-173 613.6 729 48.6
PGSC0003DMG400018251 Solanum tuberosum HOM05D005824 ORTHO05D007029 2.5e-173 613.2 729 48.6
CAN.G1374.10 Capsicum annuum HOM05D005824 ORTHO05D007029 6.1e-172 608.6 728 48.5
CANSAT54G1845 Cannabis sativa HOM05D005824 ORTHO05D007029 1.0e-171 607.8 718 48.5
ClCG07G011770 Citrullus lanatus HOM05D005824 ORTHO05D007029 1.8e-171 607.1 730 49.5
MBI19_g32704_MAGBIO Magnolia biondii HOM05D005824 ORTHO05D007029 1.2e-170 604.4 723 50.3
EL10Ac4g09532 Beta vulgaris HOM05D005824 ORTHO05D007029 3.4e-170 602.8 743 47.9
Gohir.D02G178900 Gossypium hirsutum HOM05D005824 ORTHO05D007029 3.4e-170 602.8 732 49.3
Hund21844 Selenicereus undatus HOM05D005824 ORTHO05D007029 8.3e-169 598.2 807 45.1
Sed0007659 Sechium edule HOM05D005824 ORTHO05D007029 5.9e-167 592.0 722 47.6
MELO3C017799.2 Cucumis melo HOM05D005824 ORTHO05D007029 1.3e-166 590.9 730 48.5
SGA_v2.0_scaffold33G13450 Striga asiatica HOM05D005824 ORTHO05D007029 2.9e-166 589.7 720 48.5
CsaV3_4G002430 Cucumis sativus L. HOM05D005824 ORTHO05D007029 5.6e-165 585.5 730 48.4
Migut.B00860 Erythranthe guttata HOM05D005824 ORTHO05D007029 9.5e-165 584.7 709 48.2
RcHm_v2.0_Chr3g0458051 Rosa chinensis HOM05D005824 ORTHO05D007029 1.6e-164 583.9 781 46.6
PSO384G0570 Papaver somniferum HOM05D005824 ORTHO05D007029 1.0e-163 581.3 719 48.0
PSO339G3868 Papaver somniferum HOM05D005824 ORTHO05D007029 5.2e-163 578.9 719 47.8
Duzib150G0567 Durio zibethinus HOM05D005824 ORTHO05D007029 1.2e-162 577.8 692 49.4
COL.COLO4_11087 Corchorus olitorius HOM05D005824 ORTHO05D007029 2.2e-161 573.5 719 46.6
MD12G1202100 Malus domestica HOM05D005824 ORTHO05D007029 1.5e-157 560.8 767 44.5
Nn2g14227 Nelumbo nucifera HOM05D005824 ORTHO05D007029 4.3e-157 559.3 725 47.3
Aa31LG11G9880 Aethionema arabicum HOM05D005824 ORTHO05D007029 4.7e-156 555.8 731 45.7
MD04G1189300 Malus domestica HOM05D005824 ORTHO05D007029 6.2e-156 555.4 761 44.5
Hma1.2p1_1243F.1_g269980 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 4.0e-155 552.7 627 49.9
ECA247G2466 Erigeron canadensis HOM05D005824 ORTHO05D007029 1.5e-154 550.8 712 46.6
Nitab4.5_0000185g0360 Nicotiana tabacum HOM05D005824 ORTHO05D007029 3.4e-154 549.7 731 46.0
Thhalv10003721m.g Eutrema salsugineum HOM05D005824 ORTHO05D007029 1.3e-153 547.7 740 45.7
PSO017G5895 Papaver somniferum HOM05D005824 ORTHO05D007029 1.1e-152 544.7 718 45.8
FvH4_6g08180 Fragaria vesca HOM05D005824 ORTHO05D007029 3.2e-152 543.1 785 43.2
Sp2g21220 Schrenkiella parvula HOM05D005824 ORTHO05D007029 5.4e-152 542.3 756 44.3
FAN14G3202 Fragaria x ananassa HOM05D005824 ORTHO05D007029 9.2e-152 541.6 785 43.1
Carub.0006s2449 Capsella rubella HOM05D005824 ORTHO05D007029 2.7e-151 540.0 738 44.9
Duzib168G0004 Durio zibethinus HOM05D005824 ORTHO05D007029 2.7e-151 540.0 717 45.2
PSO063G2449 Papaver somniferum HOM05D005824 ORTHO05D007029 7.3e-149 531.9 721 46.0
CARHR186810 Cardamine hirsuta HOM05D005824 ORTHO05D007029 2.8e-148 530.0 744 43.8
AT5G26760 Arabidopsis thaliana HOM05D005824 ORTHO05D007029 1.2e-146 524.6 763 43.5
Ah.10g027060 Amaranthus hybridus HOM05D005824 ORTHO05D007029 8.3e-145 518.5 766 43.9
FAN09G3961 Fragaria x ananassa HOM05D005824 ORTHO05D007029 1.6e-143 514.2 783 42.9
AL6G38630 Arabidopsis lyrata HOM05D005824 ORTHO05D007029 3.3e-141 506.5 858 39.3
Peaxi162Scf00357g00429 Petunia axillaris HOM05D005824 ORTHO05D007029 1.3e-134 484.6 663 45.1
FAN05G5613 Fragaria x ananassa HOM05D005824 ORTHO05D007029 2.5e-133 480.3 768 43.0
DCAR_005271 Daucus carota HOM05D005824 ORTHO05D007029 4.8e-132 476.1 730 43.3
unitig_748.g6998 Utricularia gibba HOM05D005824 ORTHO05D000260 8.1e-132 475.3 702 42.2
BolC2t11924H Brassica oleracea HOM05D005824 ORTHO05D007029 3.5e-127 459.9 829 39.2
Ciclev10011677m.g Citrus clementina HOM05D005824 ORTHO05D007029 6.6e-126 455.7 472 54.4
C02p58640 Brassica napus HOM05D005824 ORTHO05D007029 1.9e-125 454.1 823 39.0
ATR0693G066 Amborella trichopoda HOM05D005824 ORTHO05D007029 4.3e-125 453.0 708 40.8
Lsat_1_v5_gn_9_78801 Lactuca sativa HOM05D005824 ORTHO05D007029 3.6e-124 449.9 681 43.5
PGR083G1123 Punica granatum HOM05D005824 ORTHO05D007029 6.9e-123 445.7 552 48.6
BraA02t08872Z Brassica rapa HOM05D005824 ORTHO05D007029 5.8e-122 442.6 850 37.3
A02p39030 Brassica napus HOM05D005824 ORTHO05D007029 1.3e-121 441.4 854 37.2
CDE01G0540 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 2.2e-121 440.7 735 39.3
FAN02G4519 Fragaria x ananassa HOM05D005824 ORTHO05D007029 2.4e-120 437.2 763 40.4
Nitab4.5_0002783g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 5.4e-120 436.0 720 40.3
BcaNung06222 Brassica carinata HOM05D005824 ORTHO05D007029 1.2e-111 408.3 828 38.0
HanXRQChr12g0362901 Helianthus annuus HOM05D005824 ORTHO05D007029 5.7e-109 399.4 721 39.1
Os05g0134300 Oryza sativa ssp. japonica HOM05D005824 ORTHO05D007029 6.9e-99 365.9 736 35.1
BolC7t44682H Brassica oleracea HOM05D005824 ORTHO05D007029 5.1e-94 349.7 729 35.4
Actinidia35501 Actinidia chinensis HOM05D005824 ORTHO05D007029 9.7e-93 345.5 702 36.2
C07p41490 Brassica napus HOM05D005824 ORTHO05D007029 1.2e-90 338.6 727 34.7
BcaNung03676 Brassica carinata HOM05D005824 ORTHO05D007029 5.0e-89 333.2 723 35.1
Gohir.A08G201701 Gossypium hirsutum HOM05D005824 ORTHO05D007029 5.3e-75 286.6 719 33.1
Zm00001eb354720 Zea mays HOM05D005824 ORTHO05D007029 5.9e-74 283.1 637 35.2
Solyc01g101010.4 Solanum lycopersicum HOM05D005824 ORTHO05D007029 2.5e-72 277.7 349 47.3
Mapoly0075s0015 Marchantia polymorpha HOM05D005824 ORTHO05D007029 6.5e-65 253.1 735 29.3
Hma1.2p1_1553F.1_g290340 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 1.0e-62 245.7 695 32.8
HPP92_021934 Vanilla planifolia HOM05D005824 ORTHO05D007029 6.8e-62 243.0 523 37.1
Pp3c6_10400 Physcomitrium patens HOM05D005824 ORTHO05D007029 4.4e-61 240.4 883 27.6
SEGI_20129 Sequoiadendron giganteum HOM05D005824 ORTHO05D007029 3.8e-57 227.3 317 42.9
Nitab4.5_0000185g0370 Nicotiana tabacum HOM05D005824 ORTHO05D007029 5.0e-57 226.9 274 45.3
SGA_v2.0_scaffold438G51629 Striga asiatica HOM05D005824 ORTHO05D007029 5.0e-57 226.9 196 56.6
SMO203G0090 Selaginella moellendorffii HOM05D005824 ORTHO05D007029 3.0e-54 217.6 721 25.9
A06p36990 Brassica napus HOM05D005824 ORTHO05D007029 9.2e-43 179.5 177 50.8
BraA06t26625Z Brassica rapa HOM05D005824 ORTHO05D007029 9.2e-43 179.5 177 50.8
Oeu060660.1 Olea europaea HOM05D005824 ORTHO05D007029 6.0e-42 176.8 126 69.0
AagrBONN_evm.TU.Sc2ySwM_117.2728 Anthoceros agrestis HOM05D005824 ORTHO05D007029 6.6e-41 173.3 719 26.3
CBR_g20185 Chara braunii HOM05D005824 ORTHO05D007029 1.5e-40 172.2 409 30.8
Dinv30929 Davidia involucrata HOM05D005824 ORTHO05D007029 3.6e-39 167.5 135 66.7
HPP92_021933 Vanilla planifolia HOM05D005824 ORTHO05D007029 3.6e-39 167.5 181 48.6
Cfa020079 Carpinus fangiana HOM05D005824 ORTHO05D007029 5.4e-27 127.1 82 75.6
CANSAT54G0922 Cannabis sativa HOM05D005824 ORTHO05D007029 1.7e-25 122.1 238 34.5
Nitab4.5_0000185g0350 Nicotiana tabacum HOM05D005824 ORTHO05D007029 1.2e-21 109.4 103 56.3
CDE12G0845 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 3.0e-17 94.7 90 50.0
Zm00001eb056090 Zea mays HOM05D000739 ORTHO05D007029 9.6e-16 89.7 126 38.1
AUR62009842 Chenopodium quinoa HOM05D003327 ORTHO05D004535 3.6e-15 87.8 192 38.5
Zm00001eb289330 Zea mays HOM05D005824 ORTHO05D007029 8.1e-15 86.7 100 44.0
QL03p009284 Quercus lobata HOM05D005824 ORTHO05D007029 3.9e-09 67.8 54 63.0
VMungo0251G1262 Vigna mungo HOM05D005824 ORTHO05D007029 1.6e-07 62.4 184 33.2


User provided reference genes

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