Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G117400 Populus trichocarpa HOM05D004146 ORTHO05D004843 1.9e-248 862.1 450 100.0
Sabra14G0087100 Salix brachista HOM05D004146 ORTHO05D004843 1.5e-240 835.9 458 95.4
Manes.05G012300 Manihot esculenta HOM05D004146 ORTHO05D004843 2.0e-213 745.7 451 85.1
Thecc.01G319000 Theobroma cacao HOM05D004146 ORTHO05D004843 3.8e-212 741.5 452 84.7
Ciclev10020117m.g Citrus clementina HOM05D004146 ORTHO05D004843 1.4e-209 733.0 452 84.1
Gohir.D08G141300 Gossypium hirsutum HOM05D004146 ORTHO05D004843 2.0e-208 729.2 454 83.5
COL.COLO4_23187 Corchorus olitorius HOM05D004146 ORTHO05D004843 3.3e-208 728.4 446 84.1
Gorai.004G145300 Gossypium raimondii HOM05D004146 ORTHO05D004843 5.7e-208 727.6 457 83.2
Gohir.A08G120400 Gossypium hirsutum HOM05D004146 ORTHO05D004843 2.8e-207 725.3 457 82.9
Atru.chr5.940 Acer truncatum HOM05D004146 ORTHO05D004843 3.5e-205 718.4 452 82.5
Cpa.g.sc18.100 Carica papaya HOM05D004146 ORTHO05D004843 5.5e-203 711.1 450 82.7
Dinv12116 Davidia involucrata HOM05D004146 ORTHO05D004843 5.4e-198 694.5 452 81.0
QL12p018794 Quercus lobata HOM05D004146 ORTHO05D004843 1.6e-197 693.0 452 80.8
Rhsim13G0002300 Rhododendron simsii HOM05D004146 ORTHO05D004843 5.0e-196 688.0 453 79.9
Duzib211G0650 Durio zibethinus HOM05D004146 ORTHO05D004843 1.9e-195 686.0 452 80.3
CiPaw.08G086700 Carya illinoinensis HOM05D004146 ORTHO05D004843 3.3e-195 685.3 452 79.4
CSS0038119 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 5.5e-195 684.5 453 80.4
CSS0021664 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 6.1e-194 681.0 451 80.3
TWI14G0575 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 6.1e-194 681.0 449 79.5
Actinidia17925 Actinidia chinensis HOM05D004146 ORTHO05D004843 5.2e-193 677.9 453 80.6
Duzib211G0108 Durio zibethinus HOM05D004146 ORTHO05D004843 5.2e-193 677.9 418 83.3
TWI23G0480 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 3.4e-192 675.2 451 78.3
GSVIVG01028167001 Vitis vinifera HOM05D004146 ORTHO05D004843 5.7e-192 674.5 451 79.2
Eucgr.K03560 Eucalyptus grandis HOM05D004146 ORTHO05D004843 7.5e-192 674.1 452 77.0
CSS0047407 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 3.7e-191 671.8 451 79.2
vmacro02380 Vaccinium macrocarpon HOM05D004146 ORTHO05D004843 2.0e-189 666.0 459 78.6
Dinv39081 Davidia involucrata HOM05D004146 ORTHO05D004843 9.5e-187 657.1 488 73.6
Sopen01g030990 Solanum pennellii HOM05D004146 ORTHO05D004843 1.6e-186 656.4 453 77.9
AUR62024599 Chenopodium quinoa HOM05D004146 ORTHO05D004843 2.8e-186 655.6 448 75.2
PGSC0003DMG400009054 Solanum tuberosum HOM05D004146 ORTHO05D004843 3.0e-185 652.1 453 77.5
PGR083G0515 Punica granatum HOM05D004146 ORTHO05D004843 6.8e-185 651.0 451 74.9
Nn2g12083 Nelumbo nucifera HOM05D004146 ORTHO05D004843 8.9e-185 650.6 453 76.6
CANSAT80G2876 Cannabis sativa HOM05D004146 ORTHO05D004843 2.6e-184 649.0 454 76.0
EL10As5g23605 Beta vulgaris HOM05D004146 ORTHO05D004843 4.4e-184 648.3 448 76.3
Cc01_g21680 Coffea canephora HOM05D004146 ORTHO05D004843 3.7e-183 645.2 464 75.0
Sc24g0004180 Simmondsia chinensis HOM05D004146 ORTHO05D004843 1.6e-181 639.8 448 74.8
MSTRG.21711 Avicennia marina HOM05D004146 ORTHO05D004843 2.7e-181 639.0 454 74.7
TAR633G1592 Trochodendron aralioides HOM05D004146 ORTHO05D004843 2.7e-181 639.0 452 75.9
MD01G1004200 Malus domestica HOM05D004146 ORTHO05D004843 6.0e-181 637.9 452 75.4
VMungo1383G2606 Vigna mungo HOM05D004146 ORTHO05D004843 6.0e-181 637.9 452 76.8
FAN23G2063 Fragaria x ananassa HOM05D004146 ORTHO05D004843 5.0e-180 634.8 453 75.1
CAN.G293.4 Capsicum annuum HOM05D004146 ORTHO05D004843 6.6e-180 634.4 450 76.7
RcHm_v2.0_Chr3g0486991 Rosa chinensis HOM05D004146 ORTHO05D004843 5.6e-179 631.3 453 74.4
FvH4_1g26770 Fragaria vesca HOM05D004146 ORTHO05D004843 1.2e-178 630.2 451 74.3
THA.LOC104802140 Tarenaya hassleriana HOM05D004146 ORTHO05D004843 1.2e-178 630.2 463 71.1
Phvul.001G214900 Phaseolus vulgaris HOM05D004146 ORTHO05D004843 2.1e-178 629.4 452 76.1
Aa31LG1G28520 Aethionema arabicum HOM05D004146 ORTHO05D004843 3.1e-177 625.5 449 72.6
CsaV3_7G030200 Cucumis sativus L. HOM05D004146 ORTHO05D004843 3.1e-177 625.5 451 74.7
arahy.Tifrunner.gnm1.ann1.E9GQEB Arachis hypogaea HOM05D004146 ORTHO05D004843 5.2e-177 624.8 451 73.4
arahy.Tifrunner.gnm1.ann1.BI9FA3 Arachis hypogaea HOM05D004146 ORTHO05D004843 6.8e-177 624.4 451 73.4
Migut.D00054 Erythranthe guttata HOM05D004146 ORTHO05D004843 6.8e-177 624.4 454 72.5
Thhalv10001452m.g Eutrema salsugineum HOM05D004146 ORTHO05D004843 1.5e-176 623.2 449 72.6
Glyma.19G218500 Glycine max HOM05D004146 ORTHO05D004843 2.0e-176 622.9 450 75.1
Lalb_Chr04g0260041 Lupinus albus HOM05D004146 ORTHO05D004843 2.0e-176 622.9 450 74.9
SGA_v2.0_scaffold376G50305 Striga asiatica HOM05D004146 ORTHO05D004843 4.4e-176 621.7 453 73.3
CARHR142600 Cardamine hirsuta HOM05D004146 ORTHO05D004843 5.8e-176 621.3 449 72.4
MELO3C015904.2 Cucumis melo HOM05D004146 ORTHO05D004843 9.8e-176 620.5 451 74.3
Lalb_Chr18g0046551 Lupinus albus HOM05D004146 ORTHO05D004843 1.9e-174 616.3 450 73.8
Peaxi162Scf00770g00128 Petunia axillaris HOM05D004146 ORTHO05D004843 1.9e-174 616.3 446 74.4
FAN19G1384 Fragaria x ananassa HOM05D004146 ORTHO05D004843 2.4e-174 615.9 461 72.0
Sed0005540 Sechium edule HOM05D004146 ORTHO05D004843 2.4e-174 615.9 452 73.5
FAN28G1198 Fragaria x ananassa HOM05D004146 ORTHO05D004843 4.1e-174 615.1 466 71.9
AL4G46770 Arabidopsis lyrata HOM05D004146 ORTHO05D004843 5.4e-174 614.8 449 72.6
C04p00700 Brassica napus HOM05D004146 ORTHO05D004843 5.4e-174 614.8 449 71.7
Solyc01g079210.3 Solanum lycopersicum HOM05D004146 ORTHO05D004843 5.4e-174 614.8 427 77.0
AT2G47210 Arabidopsis thaliana HOM05D004146 ORTHO05D004843 9.2e-174 614.0 449 72.4
Lj1C336G0 Lonicera japonica HOM05D004146 ORTHO05D004843 9.2e-174 614.0 454 74.0
Sp4g29200 Schrenkiella parvula HOM05D004146 ORTHO05D004843 9.2e-174 614.0 449 71.9
BolC4t21705H Brassica oleracea HOM05D004146 ORTHO05D004843 2.1e-173 612.8 449 71.5
BcaB02g08794 Brassica carinata HOM05D004146 ORTHO05D004843 3.5e-173 612.1 449 71.0
BcaC02g12586 Brassica carinata HOM05D004146 ORTHO05D004843 4.6e-173 611.7 449 71.3
MD15G1342700 Malus domestica HOM05D004146 ORTHO05D004843 7.8e-173 610.9 456 73.0
Medtr7g109870 Medicago truncatula HOM05D004146 ORTHO05D004843 1.3e-172 610.1 455 72.3
ECA236G0429 Erigeron canadensis HOM05D004146 ORTHO05D004843 1.7e-172 609.8 457 74.0
Psat3g019080 Pisum sativum HOM05D004146 ORTHO05D004843 2.3e-172 609.4 452 71.9
arahy.Tifrunner.gnm1.ann1.F4ZKGQ Arachis hypogaea HOM05D004146 ORTHO05D004843 3.9e-172 608.6 450 73.6
Glyma.03G221500 Glycine max HOM05D004146 ORTHO05D004843 5.0e-172 608.2 459 73.6
BcaB06g29458 Brassica carinata HOM05D004146 ORTHO05D004843 8.6e-172 607.4 452 71.2
arahy.Tifrunner.gnm1.ann1.TWIF5Z Arachis hypogaea HOM05D004146 ORTHO05D004843 1.1e-171 607.1 450 73.3
HanXRQChr06g0168071 Helianthus annuus HOM05D004146 ORTHO05D004843 9.5e-171 604.0 430 75.3
Lj5g0012537 Lotus japonicus HOM05D004146 ORTHO05D004843 1.2e-170 603.6 453 72.2
BraSC79t46677Z Brassica rapa HOM05D004146 ORTHO05D004843 6.8e-169 597.8 452 69.9
BraA05t19061Z Brassica rapa HOM05D004146 ORTHO05D004843 2.0e-168 596.3 479 66.6
Ca_09227_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 2.0e-168 596.3 471 69.9
Nitab4.5_0000222g0120 Nicotiana tabacum HOM05D004146 ORTHO05D004843 4.4e-168 595.1 415 76.1
Prupe.3G006800 Prunus persica HOM05D004146 ORTHO05D004843 4.4e-168 595.1 394 77.9
Carub.0004s2995 Capsella rubella HOM05D004146 ORTHO05D004843 1.3e-167 593.6 449 70.4
Aqoxy2G00845 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 3.7e-167 592.0 452 72.3
TPR.G4037 Trifolium pratense HOM05D004146 ORTHO05D004843 3.7e-167 592.0 452 70.4
C04p72630 Brassica napus HOM05D004146 ORTHO05D004843 4.9e-167 591.7 453 69.8
Lj1g0001654 Lotus japonicus HOM05D004146 ORTHO05D004843 6.4e-167 591.3 452 70.1
BcaC02g06965 Brassica carinata HOM05D004146 ORTHO05D004843 1.1e-166 590.5 453 69.5
CDE10G1142 Ceratophyllum demersum HOM05D004146 ORTHO05D004843 1.1e-166 590.5 449 68.6
TPR.G38442 Trifolium pratense HOM05D004146 ORTHO05D004843 1.1e-166 590.5 452 70.4
Carub.0004s2994 Capsella rubella HOM05D004146 ORTHO05D004843 1.9e-166 589.7 449 69.7
ClCG09G004890 Citrullus lanatus HOM05D004146 ORTHO05D004843 5.4e-166 588.2 503 66.6
TAR362G0580 Trochodendron aralioides HOM05D004146 ORTHO05D004843 5.4e-166 588.2 411 76.6
PSO210G5259 Papaver somniferum HOM05D004146 ORTHO05D004843 2.1e-165 586.3 449 70.4
A04p34860 Brassica napus HOM05D004146 ORTHO05D004843 1.3e-164 583.6 478 66.1
ATR0564G334 Amborella trichopoda HOM05D004146 ORTHO05D004843 1.7e-164 583.2 455 69.7
PSO761G0652 Papaver somniferum HOM05D004146 ORTHO05D004843 6.6e-164 581.3 453 69.8
Actinidia21373 Actinidia chinensis HOM05D004146 ORTHO05D004843 1.1e-163 580.5 449 71.3
HPP92_024389 Vanilla planifolia HOM05D004146 ORTHO05D004843 1.9e-163 579.7 451 69.6
Lalb_Chr06g0167021 Lupinus albus HOM05D004146 ORTHO05D004843 4.0e-161 572.0 453 70.0
Aqoxy4G02480 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 3.5e-157 558.9 457 69.6
Lsat_1_v5_gn_0_33621 Lactuca sativa HOM05D004146 ORTHO05D004843 1.1e-155 553.9 457 68.9
Os05g0540800 Oryza sativa ssp. japonica HOM05D004146 ORTHO05D004843 1.1e-155 553.9 453 66.7
Hma1.2p1_0965F.1_g242130 Hydrangea macrophylla HOM05D004146 ORTHO05D004843 6.2e-154 548.1 458 68.6
MBI19_g36749_MAGBIO Magnolia biondii HOM05D004146 ORTHO05D004843 9.0e-153 544.3 453 67.8
Zm00001eb235700 Zea mays HOM05D004146 ORTHO05D004843 7.6e-152 541.2 452 65.5
A05p00620 Brassica napus HOM05D004146 ORTHO05D004843 1.6e-149 533.5 388 71.1
AUR62011755 Chenopodium quinoa HOM05D004146 ORTHO05D004843 3.9e-148 528.9 428 66.8
unitig_736.g22928 Utricularia gibba HOM05D004146 ORTHO05D004843 2.1e-146 523.1 457 63.9
Medtr1g086590 Medicago truncatula HOM05D004146 ORTHO05D004843 9.0e-145 517.7 427 67.0
Nitab4.5_0010752g0020 Nicotiana tabacum HOM05D004146 ORTHO05D004843 4.9e-143 511.9 372 74.2
Hund09662 Selenicereus undatus HOM05D004146 ORTHO05D004843 8.4e-143 511.1 419 68.0
Duzib138G1200 Durio zibethinus HOM05D004146 ORTHO05D004843 1.4e-142 510.4 452 64.2
DCAR_018267 Daucus carota HOM05D004146 ORTHO05D004843 1.6e-138 496.9 416 66.6
Haze_05083 Corylus avellana HOM05D004146 ORTHO05D004843 8.1e-138 494.6 481 62.0
Ca_10265_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 1.3e-135 487.3 509 56.4
TPR.G31750 Trifolium pratense HOM05D004146 ORTHO05D004843 2.0e-128 463.4 425 61.9
SEGI_29063 Sequoiadendron giganteum HOM05D004146 ORTHO05D004843 1.9e-126 456.8 469 55.2
Oeu044739.1 Olea europaea HOM05D004146 ORTHO05D004843 6.7e-124 448.4 399 61.9
CiPaw.07G120600 Carya illinoinensis HOM05D004146 ORTHO05D004843 1.3e-122 444.1 343 69.7
Lj1A14G70 Lonicera japonica HOM05D004146 ORTHO05D004843 8.2e-122 441.4 345 68.1
Mapoly0165s0024 Marchantia polymorpha HOM05D004146 ORTHO05D004843 2.3e-116 423.3 477 51.6
AagrBONN_evm.TU.Sc2ySwM_228.1245 Anthoceros agrestis HOM05D004146 ORTHO05D004843 4.5e-112 409.1 502 48.4
BcaC02g09008 Brassica carinata HOM05D004146 ORTHO05D004843 1.7e-111 407.1 458 55.0
SMO244G0096 Selaginella moellendorffii HOM05D004146 ORTHO05D004843 2.6e-107 393.3 449 50.3
Pp3c1_35180 Physcomitrium patens HOM05D004146 ORTHO05D004843 5.3e-105 385.6 486 45.5
SHI33153 Sapria himalayana HOM05D004146 ORTHO05D004843 4.4e-99 365.9 238 76.5
Psat6g160560 Pisum sativum HOM05D004146 ORTHO05D004843 8.2e-98 361.7 401 52.6
BolC4t25516H Brassica oleracea HOM05D004146 ORTHO05D004843 2.0e-96 357.1 336 60.4
Dinv33143 Davidia involucrata HOM05D004146 ORTHO05D004843 6.1e-93 345.5 488 48.0
CBR_g3593 Chara braunii HOM05D004146 ORTHO05D004843 2.6e-83 313.5 482 42.1
Psat6g160640 Pisum sativum HOM05D004146 ORTHO05D004843 1.9e-78 297.4 374 50.8
Mapoly0092s0082 Marchantia polymorpha HOM05D004146 ORTHO05D004843 8.0e-77 292.0 517 38.7
Pp3c2_4040 Physcomitrium patens HOM05D004146 ORTHO05D004843 4.9e-74 282.7 377 44.3
BolC4t28751H Brassica oleracea HOM05D004146 ORTHO05D004843 9.8e-67 258.5 251 62.2
BolC4t25515H Brassica oleracea HOM05D004146 ORTHO05D004843 3.1e-60 236.9 173 69.9
C04p39500 Brassica napus HOM05D004146 ORTHO05D004843 2.1e-56 224.2 177 64.4
C04p39490 Brassica napus HOM05D004146 ORTHO05D004843 1.0e-55 221.9 178 64.6
PRCOL_00004506 Prasinoderma coloniale HOM05D004146 ORTHO05D004843 2.5e-54 217.2 392 37.5
SalBow3G0988 Salvia bowleyana HOM05D004146 ORTHO05D004843 5.6e-54 216.1 128 82.8
Lj1g0004326 Lotus japonicus HOM05D004146 ORTHO05D004843 5.2e-52 209.5 262 50.8
BcaC02g09009 Brassica carinata HOM05D004146 ORTHO05D004843 8.9e-52 208.8 171 63.2
AagrBONN_evm.TU.Sc2ySwM_228.1331 Anthoceros agrestis HOM05D004146 ORTHO05D004843 1.7e-47 194.5 389 37.0
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 7.3e-46 189.1 167 70.1
Actinidia20972 Actinidia chinensis HOM05D004146 ORTHO05D004843 6.2e-45 186.0 242 48.8
Cre03.g144907 Chlamydomonas reinhardtii HOM05D004146 ORTHO05D004843 4.0e-44 183.3 265 41.1
Psat6g160680 Pisum sativum HOM05D004146 ORTHO05D004843 3.4e-35 153.7 117 61.5
Lj1A14G71 Lonicera japonica HOM05D004146 ORTHO05D004843 3.8e-34 150.2 131 67.2
MCO05G453 Micromonas commoda HOM05D004146 ORTHO05D004843 7.1e-33 146.0 366 34.4
Oeu062253.1 Olea europaea HOM05D004146 ORTHO05D004843 2.3e-31 141.0 140 53.6
TPR.G18531 Trifolium pratense HOM05D004146 ORTHO05D004843 6.2e-29 132.9 115 59.1
Lsat_1_v5_gn_2_7680 Lactuca sativa HOM05D004146 ORTHO05D004843 8.4e-26 122.5 143 58.0
Lsat_1_v5_gn_3_136441 Lactuca sativa HOM05D004146 ORTHO05D004843 1.9e-25 121.3 161 49.7
BcaC02g12616 Brassica carinata HOM05D004146 ORTHO05D004843 1.2e-24 118.6 171 45.0
Lsat_1_v5_gn_8_147141 Lactuca sativa HOM05D004146 ORTHO05D004843 4.6e-24 116.7 143 51.7
GSVIVG01028163001 Vitis vinifera HOM05D004146 ORTHO05D004843 1.6e-21 108.2 82 73.2
CAN.G111.15 Capsicum annuum HOM05D004146 ORTHO05D004843 1.3e-18 98.6 57 77.2
C04p39510 Brassica napus HOM05D004146 ORTHO05D004843 1.7e-18 98.2 121 58.7
Cfa022451 Carpinus fangiana HOM05D004146 ORTHO05D004843 2.7e-16 90.9 297 24.9
RcHm_v2.0_Chr2g0114941 Rosa chinensis HOM05D004146 ORTHO05D004843 7.9e-16 89.4 99 48.5
HPP92_024388 Vanilla planifolia HOM05D002498 ORTHO05D008129 8.7e-15 85.9 54 74.1
BolC4t28750H Brassica oleracea HOM05D004146 ORTHO05D004843 3.7e-13 80.5 199 33.7
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 2.5e-09 67.8 109 37.6
Lsat_1_v5_gn_4_71221 Lactuca sativa HOM05D002292 ORTHO05D003256 2.7e-08 64.3 42 81.0
CSS0026841 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 3.9e-07 60.5 32 90.6
DCAR_017471 Daucus carota HOM05D004146 ORTHO05D004843 8.7e-07 59.3 42 66.7
VMungo1383G1227 Vigna mungo HOM05D004146 ORTHO05D000001 8.7e-07 59.3 84 48.8
Oeu042819.1 Olea europaea HOM05D004146 ORTHO05D004843 1.9e-06 58.2 40 72.5
SHI33154 Sapria himalayana HOM05D004146 ORTHO05D004843 5.7e-06 56.6 50 58.0


User provided reference genes

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