Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.012G080300 Populus trichocarpa HOM05D004647 ORTHO05D005349 3.3e-133 478.4 243 100.0
Sabra12G0057400 Salix brachista HOM05D004647 ORTHO05D005349 7.0e-128 460.7 240 96.2
TPR.G19928 Trifolium pratense HOM05D004647 ORTHO05D005349 8.1e-116 420.6 240 86.2
TPR.G14966 Trifolium pratense HOM05D004647 ORTHO05D005349 2.3e-115 419.1 240 86.7
Medtr5g043110 Medicago truncatula HOM05D004647 ORTHO05D005349 5.8e-114 414.5 240 85.0
Lj2g0019057 Lotus japonicus HOM05D004647 ORTHO05D005349 7.5e-114 414.1 240 85.8
arahy.Tifrunner.gnm1.ann1.HI7WIW Arachis hypogaea HOM05D004647 ORTHO05D005349 1.3e-113 413.3 240 84.6
GSVIVG01007738001 Vitis vinifera HOM05D004647 ORTHO05D005349 1.3e-113 413.3 233 88.0
Glyma.02G112000 Glycine max HOM05D004647 ORTHO05D005349 1.7e-113 412.9 239 84.5
arahy.Tifrunner.gnm1.ann1.T8C5SJ Arachis hypogaea HOM05D004647 ORTHO05D005349 2.9e-113 412.1 240 84.6
Gohir.A03G097600 Gossypium hirsutum HOM05D004647 ORTHO05D005349 4.1e-112 408.3 240 83.3
CiPaw.11G026900 Carya illinoinensis HOM05D004647 ORTHO05D005349 5.4e-112 407.9 240 84.2
Glyma.01G053700 Glycine max HOM05D004647 ORTHO05D005349 5.4e-112 407.9 240 83.8
Psat2g127400 Pisum sativum HOM05D004647 ORTHO05D005349 5.4e-112 407.9 240 85.0
Gorai.005G137000 Gossypium raimondii HOM05D004647 ORTHO05D005349 7.1e-112 407.5 240 83.3
Lalb_Chr10g0098541 Lupinus albus HOM05D004647 ORTHO05D005349 7.1e-112 407.5 240 85.4
Prupe.5G174300 Prunus persica HOM05D004647 ORTHO05D005349 9.2e-112 407.1 240 81.2
Atru.chr9.2461 Acer truncatum HOM05D004647 ORTHO05D005349 1.2e-111 406.8 240 81.7
Phvul.002G091200 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 1.2e-111 406.8 240 83.8
Actinidia19099 Actinidia chinensis HOM05D004647 ORTHO05D005349 1.6e-111 406.4 240 82.9
Gohir.D02G116700 Gossypium hirsutum HOM05D004647 ORTHO05D005349 1.7e-110 402.9 240 82.5
Phvul.003G111100 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 2.3e-110 402.5 240 83.3
Ca_06453_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 3.9e-110 401.7 221 91.0
Lj5A124T65 Lonicera japonica HOM05D004647 ORTHO05D005349 5.1e-110 401.4 235 83.8
PGR083G2070 Punica granatum HOM05D004647 ORTHO05D005349 8.6e-110 400.6 240 80.8
vmacro16607 Vaccinium macrocarpon HOM05D004647 ORTHO05D005349 1.9e-109 399.4 239 81.6
Cc04_g13970 Coffea canephora HOM05D004647 ORTHO05D005349 2.5e-109 399.1 240 82.9
RcHm_v2.0_Chr7g0193601 Rosa chinensis HOM05D004647 ORTHO05D005349 4.3e-109 398.3 234 83.3
PSO478G0146 Papaver somniferum HOM05D004647 ORTHO05D005349 7.3e-109 397.5 239 80.3
Rhsim12G0164400 Rhododendron simsii HOM05D004647 ORTHO05D005349 7.3e-109 397.5 240 80.8
Ciclev10021986m.g Citrus clementina HOM05D004647 ORTHO05D005349 9.5e-109 397.1 240 80.8
Hma1.2p1_0701F.1_g205920 Hydrangea macrophylla HOM05D004647 ORTHO05D005349 1.2e-108 396.7 239 82.4
Manes.14G066300 Manihot esculenta HOM05D004647 ORTHO05D005349 1.6e-108 396.4 212 92.9
PSO017G4490 Papaver somniferum HOM05D004647 ORTHO05D005349 1.6e-108 396.4 239 79.9
TWI15G0781 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 3.6e-108 395.2 241 81.7
CANSAT64G1060 Cannabis sativa HOM05D004647 ORTHO05D005349 8.1e-108 394.0 239 81.2
QL10p011820 Quercus lobata HOM05D004647 ORTHO05D005349 8.1e-108 394.0 240 81.7
FAN04G0366 Fragaria x ananassa HOM05D004647 ORTHO05D005349 3.1e-107 392.1 234 82.9
FAN13G1078 Fragaria x ananassa HOM05D004647 ORTHO05D005349 3.1e-107 392.1 232 83.2
FAN08G1047 Fragaria x ananassa HOM05D004647 ORTHO05D005349 5.2e-107 391.3 234 82.9
COL.COLO4_30028 Corchorus olitorius HOM05D004647 ORTHO05D005349 6.8e-107 391.0 273 74.4
ClCG06G016990 Citrullus lanatus HOM05D004647 ORTHO05D005349 8.9e-107 390.6 240 79.6
DCAR_016485 Daucus carota HOM05D004647 ORTHO05D005349 1.5e-106 389.8 238 80.7
Eucgr.B00371 Eucalyptus grandis HOM05D004647 ORTHO05D005349 2.0e-106 389.4 240 79.6
FAN18G2734 Fragaria x ananassa HOM05D004647 ORTHO05D005349 2.0e-106 389.4 234 82.1
TWI53G1063 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 2.6e-106 389.0 241 81.7
THA.LOC104807116 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 3.4e-106 388.7 239 79.5
THA.LOC104824976 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 3.4e-106 388.7 239 79.5
ATR0680G372 Amborella trichopoda HOM05D004647 ORTHO05D005349 9.9e-106 387.1 240 76.7
MD06G1174300 Malus domestica HOM05D004647 ORTHO05D005349 1.7e-105 386.3 240 78.8
CARHR059710 Cardamine hirsuta HOM05D004647 ORTHO05D005349 3.8e-105 385.2 241 79.7
MBI16_g05634_MAGBIO Magnolia biondii HOM05D004647 ORTHO05D005349 3.8e-105 385.2 248 77.0
Sed0013198 Sechium edule HOM05D004647 ORTHO05D005349 3.8e-105 385.2 240 78.3
HPP92_005895 Vanilla planifolia HOM05D004647 ORTHO05D005349 3.8e-105 385.2 236 78.0
Carub.0004s0503 Capsella rubella HOM05D004647 ORTHO05D005349 4.9e-105 384.8 239 80.8
Aqoxy3G01032 Aquilegia oxysepala HOM05D004647 ORTHO05D005349 1.4e-104 383.3 235 80.4
Oeu035987.1 Olea europaea HOM05D004647 ORTHO05D005349 1.4e-104 383.3 240 78.8
MSTRG.11448 Avicennia marina HOM05D004647 ORTHO05D005349 4.2e-104 381.7 240 77.1
Migut.I00016 Erythranthe guttata HOM05D004647 ORTHO05D005349 1.6e-103 379.8 240 77.9
Hund09433 Selenicereus undatus HOM05D004647 ORTHO05D005349 2.7e-103 379.0 240 78.8
CSS0008435 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 5.1e-102 374.8 240 77.1
Sc10g0010060 Simmondsia chinensis HOM05D004647 ORTHO05D005349 1.5e-101 373.2 232 79.7
Nitab4.5_0000003g0580 Nicotiana tabacum HOM05D004647 ORTHO05D005349 3.3e-101 372.1 239 75.7
SGA_v2.0_scaffold90G27942 Striga asiatica HOM05D004647 ORTHO05D005349 3.3e-101 372.1 259 72.6
Lsat_1_v5_gn_4_75321 Lactuca sativa HOM05D004647 ORTHO05D005349 5.6e-101 371.3 241 78.0
AL7G19680 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 7.3e-101 370.9 241 77.2
QL02p100995 Quercus lobata HOM05D004647 ORTHO05D005349 7.3e-101 370.9 340 59.7
Os01g0891400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 1.2e-100 370.2 239 76.2
Sopen06g027740 Solanum pennellii HOM05D004647 ORTHO05D005349 1.6e-100 369.8 233 77.3
Sp7g29960 Schrenkiella parvula HOM05D004647 ORTHO05D005349 2.1e-100 369.4 241 78.0
BcaC01g01036 Brassica carinata HOM05D004647 ORTHO05D005349 2.8e-100 369.0 241 77.6
A08p18330 Brassica napus HOM05D004647 ORTHO05D005349 2.8e-100 369.0 241 77.6
BraA08t33790Z Brassica rapa HOM05D004647 ORTHO05D005349 2.8e-100 369.0 241 77.6
AUR62030968 Chenopodium quinoa HOM05D004647 ORTHO05D005349 2.8e-100 369.0 240 76.2
Thecc.03G011300 Theobroma cacao HOM05D004647 ORTHO05D005349 2.8e-100 369.0 212 86.3
Nitab4.5_0000866g0170 Nicotiana tabacum HOM05D004647 ORTHO05D005349 4.7e-100 368.2 239 75.3
Os01g0661400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 6.2e-100 367.9 239 75.3
BolC3t21057H Brassica oleracea HOM05D004647 ORTHO05D005349 1.1e-99 367.1 241 77.6
PGSC0003DMG400027091 Solanum tuberosum HOM05D004647 ORTHO05D005349 1.1e-99 367.1 233 76.4
AT4G32175 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 3.1e-99 365.5 241 75.9
FAN18G2015 Fragaria x ananassa HOM05D004647 ORTHO05D005349 5.3e-99 364.8 289 66.1
AT2G25355 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 6.9e-99 364.4 241 76.3
Solyc06g071460.3 Solanum lycopersicum HOM05D004647 ORTHO05D005349 6.9e-99 364.4 236 76.3
FvH4_5g05270 Fragaria vesca HOM05D004647 ORTHO05D005349 1.5e-98 363.2 213 84.0
AL4G16790 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 2.6e-98 362.5 241 74.7
TAR374G0909 Trochodendron aralioides HOM05D004647 ORTHO05D005349 9.9e-98 360.5 209 84.7
HanXRQChr16g0504011 Helianthus annuus HOM05D004647 ORTHO05D005349 4.9e-97 358.2 240 75.0
BcaB03g12733 Brassica carinata HOM05D004647 ORTHO05D005349 1.1e-96 357.1 241 75.9
ECA232G2959 Erigeron canadensis HOM05D004647 ORTHO05D005349 3.2e-96 355.5 240 75.0
AUR62008215 Chenopodium quinoa HOM05D004647 ORTHO05D005349 5.4e-96 354.8 265 68.7
Thhalv10026115m.g Eutrema salsugineum HOM05D004647 ORTHO05D005349 5.4e-96 354.8 241 74.7
CAN.G628.78 Capsicum annuum HOM05D004647 ORTHO05D005349 7.1e-96 354.4 229 73.8
unitig_52.g17486 Utricularia gibba HOM05D004647 ORTHO05D005349 4.6e-95 351.7 240 73.8
CARHR240100 Cardamine hirsuta HOM05D004647 ORTHO05D005349 6.0e-95 351.3 241 72.2
Zm00001eb157720 Zea mays HOM05D004647 ORTHO05D005349 1.0e-94 350.5 232 73.7
EL10Ac5g10752 Beta vulgaris HOM05D004647 ORTHO05D005349 1.7e-94 349.7 223 77.1
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 8.7e-94 347.4 240 73.8
MD06G1174500 Malus domestica HOM05D004647 ORTHO05D005349 8.7e-94 347.4 242 72.3
Cpa.g.sc124.56 Carica papaya HOM05D004647 ORTHO05D005349 2.5e-93 345.9 202 83.2
DCAR_028017 Daucus carota HOM05D004647 ORTHO05D005349 5.6e-93 344.7 198 86.4
CDE11G0116 Ceratophyllum demersum HOM05D004647 ORTHO05D005349 2.2e-89 332.8 213 75.1
SalBow3G4197 Salvia bowleyana HOM05D004647 ORTHO05D005349 2.9e-89 332.4 283 62.9
Haze_07464 Corylus avellana HOM05D004647 ORTHO05D005349 3.5e-87 325.5 241 71.0
Zm00001eb157740 Zea mays HOM05D004647 ORTHO05D005349 1.3e-86 323.6 200 78.5
Peaxi162Scf00689g00228 Petunia axillaris HOM05D004647 ORTHO05D005349 1.1e-85 320.5 198 78.3
Carub.0007s0838 Capsella rubella HOM05D004647 ORTHO05D005349 1.5e-82 310.1 192 80.2
Aa31LG2G17760 Aethionema arabicum HOM05D004647 ORTHO05D005349 4.5e-82 308.5 241 68.0
Dinv02900 Davidia involucrata HOM05D004647 ORTHO05D005349 7.9e-79 297.7 176 80.1
CsaV3_1G001530 Cucumis sativus L. HOM05D004647 ORTHO05D005349 2.8e-76 289.3 171 81.3
Pp3c9_4960 Physcomitrium patens HOM05D004647 ORTHO05D005349 7.6e-74 281.2 230 61.3
THA.LOC104801749 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 3.2e-72 275.8 167 77.2
Mapoly0033s0011 Marchantia polymorpha HOM05D004647 ORTHO05D005349 4.6e-71 271.9 239 54.8
SMO358G0755 Selaginella moellendorffii HOM05D004647 ORTHO05D005349 8.7e-70 267.7 223 57.0
Nn3g16872 Nelumbo nucifera HOM05D004647 ORTHO05D005349 1.3e-65 253.8 145 82.1
THA.LOC104815465 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 2.2e-65 253.1 149 83.2
SEGI_17588 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 3.8e-57 225.7 140 80.0
SEGI_39775 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 3.8e-57 225.7 140 80.0
Sed0007118 Sechium edule HOM05D004647 ORTHO05D005349 2.5e-56 223.0 182 65.9
MELO3C026290.2 Cucumis melo HOM05D004647 ORTHO05D005349 5.5e-56 221.9 135 79.3
AagrBONN_evm.TU.Sc2ySwM_117.3294 Anthoceros agrestis HOM05D004647 ORTHO05D005349 9.4e-56 221.1 195 54.9
VMungo1215G1703 Vigna mungo HOM05D004647 ORTHO05D005349 7.9e-55 218.0 125 83.2
PSO384G3338 Papaver somniferum HOM05D004647 ORTHO05D005349 8.2e-52 208.0 170 62.9
VMungo1215G3307 Vigna mungo HOM05D004647 ORTHO05D005349 1.8e-51 206.8 120 85.8
QL02p101061 Quercus lobata HOM05D004647 ORTHO05D005349 3.1e-51 206.1 119 88.2
CSS0025503 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 3.5e-50 202.6 126 79.4
QL02p101105 Quercus lobata HOM05D004647 ORTHO05D005349 1.0e-49 201.1 120 85.0
Zm00001eb359590 Zea mays HOM05D004647 ORTHO05D005349 1.3e-49 200.7 131 74.0
Cre07.g319900 Chlamydomonas reinhardtii HOM05D004647 ORTHO05D005349 3.8e-49 199.1 230 43.9
Medtr5g009430 Medicago truncatula HOM05D004647 ORTHO05D005349 3.8e-49 199.1 118 82.2
Ca_07701_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 1.1e-43 181.0 129 75.2
CBR_g61059 Chara braunii HOM05D004647 ORTHO05D005349 5.9e-42 175.3 233 43.3
Glyma.19G045000 Glycine max HOM05D004647 ORTHO05D005349 1.0e-38 164.5 120 70.0
CAN.G110.1 Capsicum annuum HOM05D004647 ORTHO05D005349 5.9e-34 148.7 145 55.9
SEGI_00924 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.3e-33 147.5 100 75.0
CSS0039197 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 3.6e-31 139.4 111 66.7
Oeu005668.1 Olea europaea HOM05D004647 ORTHO05D005349 2.0e-29 133.7 85 72.9
PRCOL_00002933 Prasinoderma coloniale HOM05D004647 ORTHO05D005349 2.6e-29 133.3 178 44.9
Cc00_g25260 Coffea canephora HOM05D004647 ORTHO05D005349 7.5e-29 131.7 80 80.0
Ca_24957_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 8.3e-28 128.3 106 65.1
Cc00_g18100 Coffea canephora HOM05D004647 ORTHO05D005349 1.1e-27 127.9 89 68.5
Ca_22423_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 9.1e-27 124.8 100 71.0
Cfa024128 Carpinus fangiana HOM05D004647 ORTHO05D005349 5.9e-26 122.1 223 35.4
SEGI_26695 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 2.3e-25 120.2 89 56.2
PGSC0003DMG400042364 Solanum tuberosum HOM05D004647 ORTHO05D005349 6.6e-25 118.6 91 63.7
Potri.015G075400 Populus trichocarpa HOM05D004647 ORTHO05D005349 1.5e-24 117.5 71 84.5
MCO01G631 Micromonas commoda HOM05D004647 ORTHO05D005349 6.3e-20 102.1 184 33.2
CSS0048825 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 1.6e-18 97.4 59 78.0
Cc00_g33640 Coffea canephora HOM05D004647 ORTHO05D005349 4.5e-18 95.9 50 86.0
MD14G1181100 Malus domestica HOM05D004647 ORTHO05D005349 2.8e-15 86.7 162 39.5
SEGI_09107 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 3.6e-15 86.3 62 67.7
QL02p027014 Quercus lobata HOM05D004647 ORTHO05D005349 3.0e-09 66.6 39 76.9
QL02p024044 Quercus lobata HOM05D004647 ORTHO05D005349 9.5e-08 61.6 33 78.8
SHI17043 Sapria himalayana HOM05D004647 ORTHO05D005349 2.1e-07 60.5 30 93.3


User provided reference genes

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