Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.012G058100 Populus trichocarpa HOM05D000251 ORTHO05D007889 0.0e+00 1739.2 966 100.0
Sabra12G0041800 Salix brachista HOM05D000251 ORTHO05D007889 0.0e+00 1518.8 947 85.4
CiPaw.15G123200 Carya illinoinensis HOM05D000251 ORTHO05D007889 0.0e+00 1134.0 926 67.7
QL10p022316 Quercus lobata HOM05D000251 ORTHO05D007889 0.0e+00 1126.3 911 67.5
Cfa019845 Carpinus fangiana HOM05D000251 ORTHO05D007889 0.0e+00 1097.4 953 65.0
Ciclev10018692m.g Citrus clementina HOM05D000251 ORTHO05D007889 0.0e+00 1094.0 915 66.3
Manes.05G117300 Manihot esculenta HOM05D000251 ORTHO05D007889 0.0e+00 1092.0 744 77.7
Thecc.03G114900 Theobroma cacao HOM05D000251 ORTHO05D007889 0.0e+00 1089.7 918 66.1
Atru.chr9.705 Acer truncatum HOM05D000251 ORTHO05D007889 0.0e+00 1088.9 824 71.5
TWI81G0067 Tripterygium wilfordii HOM05D000251 ORTHO05D007889 0.0e+00 1087.0 807 71.9
Dinv36870 Davidia involucrata HOM05D000251 ORTHO05D007889 0.0e+00 1083.6 856 68.1
Duzib205G0552 Durio zibethinus HOM05D000251 ORTHO05D007889 0.0e+00 1081.6 898 66.8
COL.COLO4_32187 Corchorus olitorius HOM05D000251 ORTHO05D007889 0.0e+00 1076.6 907 65.3
TAR622G0769 Trochodendron aralioides HOM05D000251 ORTHO05D007889 6.6e-312 1074.3 931 64.1
Prupe.5G214300 Prunus persica HOM05D000251 ORTHO05D007889 7.5e-306 1053.9 910 64.2
CSS0040641 Camellia sinensis var. sinensis HOM05D000251 ORTHO05D007889 7.0e-304 1047.3 923 63.2
Gohir.D03G100900 Gossypium hirsutum HOM05D000251 ORTHO05D007889 7.7e-303 1043.9 925 63.2
Rhsim08G0149100 Rhododendron simsii HOM05D000251 ORTHO05D007889 7.7e-303 1043.9 911 63.6
CANSAT80G2803 Cannabis sativa HOM05D000251 ORTHO05D007889 1.0e-302 1043.5 897 63.2
GSVIVG01008206001 Vitis vinifera HOM05D000251 ORTHO05D007889 1.3e-302 1043.1 853 67.1
MD14G1219700 Malus domestica HOM05D000251 ORTHO05D007889 2.9e-302 1042.0 920 63.7
Gohir.A03G074400 Gossypium hirsutum HOM05D000251 ORTHO05D007889 1.5e-301 1039.6 920 63.2
Nn4g23656 Nelumbo nucifera HOM05D000251 ORTHO05D007889 1.9e-301 1039.3 935 62.0
RcHm_v2.0_Chr7g0184311 Rosa chinensis HOM05D000251 ORTHO05D007889 3.2e-301 1038.5 858 65.7
Gorai.003G106300 Gossypium raimondii HOM05D000251 ORTHO05D007889 7.2e-301 1037.3 925 63.0
FAN18G2230 Fragaria x ananassa HOM05D000251 ORTHO05D007889 4.0e-299 1031.6 867 64.5
arahy.Tifrunner.gnm1.ann1.ESZ5GR Arachis hypogaea HOM05D000251 ORTHO05D007889 1.3e-297 1026.5 923 61.8
MD06G1209200 Malus domestica HOM05D000251 ORTHO05D007889 1.7e-297 1026.2 915 63.0
Haze_18572 Corylus avellana HOM05D000251 ORTHO05D007889 2.8e-297 1025.4 932 63.3
PGR044G2008 Punica granatum HOM05D000251 ORTHO05D007889 1.0e-294 1016.9 878 63.8
Actinidia31039 Actinidia chinensis HOM05D000251 ORTHO05D007889 1.3e-294 1016.5 910 62.2
arahy.Tifrunner.gnm1.ann1.MAJ7P0 Arachis hypogaea HOM05D000251 ORTHO05D007889 1.3e-294 1016.5 930 61.3
FvH4_5g12911 Fragaria vesca HOM05D000251 ORTHO05D007889 1.3e-294 1016.5 858 64.2
Nitab4.5_0000646g0050 Nicotiana tabacum HOM05D000251 ORTHO05D007889 1.7e-294 1016.1 929 60.4
CsaV3_1G003490 Cucumis sativus L. HOM05D000251 ORTHO05D007889 6.6e-294 1014.2 908 61.8
Lalb_Chr12g0197521 Lupinus albus HOM05D000251 ORTHO05D007889 1.1e-293 1013.4 914 61.3
Lj9C433G11 Lonicera japonica HOM05D000251 ORTHO05D007889 2.8e-292 1008.8 882 63.6
Psat4g045640 Pisum sativum HOM05D000251 ORTHO05D007889 2.8e-292 1008.8 921 59.6
Sed0011411 Sechium edule HOM05D000251 ORTHO05D007889 2.8e-292 1008.8 927 60.6
FAN13G2548 Fragaria x ananassa HOM05D000251 ORTHO05D000414 5.2e-291 1004.6 861 63.6
Ca_02522_v3 Cicer arietinum L. HOM05D000251 ORTHO05D007889 6.8e-291 1004.2 922 60.1
Nitab4.5_0004342g0020 Nicotiana tabacum HOM05D000251 ORTHO05D007889 1.5e-290 1003.0 879 62.6
Cc04_g07720 Coffea canephora HOM05D000251 ORTHO05D007889 2.6e-290 1002.3 806 66.1
Peaxi162Scf00017g03036 Petunia axillaris HOM05D000251 ORTHO05D007889 4.9e-289 998.0 946 59.6
Glyma.05G015200 Glycine max HOM05D000251 ORTHO05D007889 1.2e-287 993.4 945 58.8
Glyma.17G123700 Glycine max HOM05D000251 ORTHO05D007889 2.0e-287 992.6 921 59.4
Lj4g0022759 Lotus japonicus HOM05D000251 ORTHO05D007889 2.7e-287 992.3 919 59.4
VMungo1215G2774 Vigna mungo HOM05D000251 ORTHO05D007889 5.9e-287 991.1 916 59.5
Medtr4g112420 Medicago truncatula HOM05D000251 ORTHO05D007889 1.7e-286 989.6 910 58.8
Eucgr.K02644 Eucalyptus grandis HOM05D000251 ORTHO05D007889 3.6e-284 981.9 923 60.8
FAN18G3790 Fragaria x ananassa HOM05D000251 ORTHO05D007889 1.0e-283 980.3 951 58.4
Sopen03g033510 Solanum pennellii HOM05D000251 ORTHO05D007889 2.9e-281 972.2 891 60.9
Solyc03g114410.3 Solanum lycopersicum HOM05D000251 ORTHO05D007889 6.4e-281 971.1 891 60.4
CAN.G781.3 Capsicum annuum HOM05D000251 ORTHO05D007889 2.4e-280 969.1 818 63.7
ClCG06G015150 Citrullus lanatus HOM05D000251 ORTHO05D007889 1.3e-278 963.4 929 59.5
TPR.G2793 Trifolium pratense HOM05D000251 ORTHO05D007889 1.5e-277 959.9 922 56.8
MELO3C017274.2 Cucumis melo HOM05D000251 ORTHO05D007889 2.4e-272 942.6 908 58.6
Aqoxy3G00409 Aquilegia oxysepala HOM05D000251 ORTHO05D007889 2.1e-271 939.5 926 58.2
EL10Ac5g11229 Beta vulgaris HOM05D000251 ORTHO05D007889 2.5e-269 932.6 897 57.1
DCAR_015126 Daucus carota HOM05D000251 ORTHO05D007889 2.8e-268 929.1 929 58.9
SGA_v2.0_scaffold283G46981 Striga asiatica HOM05D000251 ORTHO05D007889 3.6e-268 928.7 925 58.3
Carub.0006s2087 Capsella rubella HOM05D000251 ORTHO05D007889 1.5e-266 923.3 845 60.1
AUR62036928 Chenopodium quinoa HOM05D000251 ORTHO05D007889 3.4e-266 922.2 905 57.6
AL6G34270 Arabidopsis lyrata HOM05D000251 ORTHO05D007889 3.7e-265 918.7 816 61.6
Lsat_1_v5_gn_5_24161 Lactuca sativa HOM05D000251 ORTHO05D007889 6.4e-265 917.9 887 58.2
vmacro17646 Vaccinium macrocarpon HOM05D000251 ORTHO05D007889 6.4e-265 917.9 1034 52.7
HanXRQChr05g0157761 Helianthus annuus HOM05D000251 ORTHO05D007889 4.6e-263 911.8 887 57.8
AT5G23080 Arabidopsis thaliana HOM05D000251 ORTHO05D007889 7.8e-263 911.0 841 60.2
THA.LOC104819385 Tarenaya hassleriana HOM05D000251 ORTHO05D007889 3.0e-262 909.1 827 60.9
Hund02531 Selenicereus undatus HOM05D000251 ORTHO05D007889 8.6e-262 907.5 901 56.6
Migut.G01282 Erythranthe guttata HOM05D000251 ORTHO05D007889 1.5e-261 906.7 835 60.1
ECA246G2449 Erigeron canadensis HOM05D000251 ORTHO05D007889 1.2e-260 903.7 881 56.8
Aa31LG11G2570 Aethionema arabicum HOM05D000251 ORTHO05D007889 2.1e-260 902.9 803 61.5
A03p46430 Brassica napus HOM05D000251 ORTHO05D007889 4.4e-258 895.2 832 59.1
BraA03t13769Z Brassica rapa HOM05D000251 ORTHO05D007889 4.4e-258 895.2 898 56.2
Sp2g24040 Schrenkiella parvula HOM05D000251 ORTHO05D007889 9.9e-258 894.0 879 57.1
BolC7t44966H Brassica oleracea HOM05D000251 ORTHO05D007889 2.1e-255 886.3 864 57.5
C07p44450 Brassica napus HOM05D000251 ORTHO05D007889 2.7e-255 885.9 864 57.5
Cpa.g.sc13.78 Carica papaya HOM05D000251 ORTHO05D007889 7.8e-255 884.4 744 64.2
BraA09t36355Z Brassica rapa HOM05D000251 ORTHO05D007889 3.0e-254 882.5 920 55.7
Rhsim08G0139200 Rhododendron simsii HOM05D000251 ORTHO05D007889 6.6e-254 881.3 697 67.3
BcaC04g23479 Brassica carinata HOM05D000251 ORTHO05D007889 8.7e-254 880.9 882 56.3
BolC9t53705H Brassica oleracea HOM05D000251 ORTHO05D007889 8.7e-254 880.9 882 56.3
Thhalv10003608m.g Eutrema salsugineum HOM05D000251 ORTHO05D007889 2.5e-253 879.4 852 57.4
PSO017G5760 Papaver somniferum HOM05D000251 ORTHO05D007889 5.3e-251 871.7 914 56.3
C09p07920 Brassica napus HOM05D000251 ORTHO05D007889 3.4e-250 869.0 913 54.8
PSO478G4362 Papaver somniferum HOM05D000251 ORTHO05D007889 3.8e-249 865.5 919 55.9
A09p07070 Brassica napus HOM05D000251 ORTHO05D007889 1.1e-248 864.0 914 54.9
AUR62032169 Chenopodium quinoa HOM05D000251 ORTHO05D007889 3.9e-246 855.5 910 53.8
BcaB04g19889 Brassica carinata HOM05D000251 ORTHO05D007889 3.3e-245 852.4 874 55.9
Phvul.003G179400 Phaseolus vulgaris HOM05D000251 ORTHO05D007889 6.2e-244 848.2 823 57.2
Sc10g0009620 Simmondsia chinensis HOM05D000251 ORTHO05D007889 9.0e-243 844.3 744 61.2
CDE08G0099 Ceratophyllum demersum HOM05D000251 ORTHO05D007889 8.1e-236 821.2 860 52.7
ATR0723G093 Amborella trichopoda HOM05D000251 ORTHO05D007889 3.7e-228 795.8 889 52.6
SalBow2G1753 Salvia bowleyana HOM05D000251 ORTHO05D007889 9.0e-227 791.2 905 52.3
unitig_736.g22471 Utricularia gibba HOM05D000251 ORTHO05D007889 1.9e-216 756.9 833 53.2
Os06g0489200 Oryza sativa ssp. japonica HOM05D000251 ORTHO05D007889 1.2e-210 737.6 907 49.0
Ah.02g114420 Amaranthus hybridus HOM05D000251 ORTHO05D007889 5.9e-202 708.8 821 50.3
Nn039s41709 Nelumbo nucifera HOM05D000251 ORTHO05D007889 1.3e-161 574.7 508 60.2
AagrBONN_evm.TU.Sc2ySwM_344.5190 Anthoceros agrestis HOM05D000251 ORTHO05D007889 1.4e-158 564.7 924 42.4
Pp3c6_280 Physcomitrium patens HOM05D000251 ORTHO05D007889 2.1e-151 540.8 945 40.3
SMO358G0348 Selaginella moellendorffii HOM05D000251 ORTHO05D007889 1.1e-142 511.9 860 39.5
Mapoly0043s0012 Marchantia polymorpha HOM05D000251 ORTHO05D007889 2.3e-137 494.2 872 39.2
CARHR190450 Cardamine hirsuta HOM05D000251 ORTHO05D007889 5.3e-134 483.0 589 49.9
HPP92_003115 Vanilla planifolia HOM05D000251 ORTHO05D007889 1.3e-129 468.4 674 45.4
SEGI_18733 Sequoiadendron giganteum HOM05D000251 ORTHO05D007889 5.3e-118 429.9 449 53.2
Hma1.2p1_0595F.1_g186110 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 3.4e-117 427.2 355 63.1
Hma1.2p1_0595F.1_g186100 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 7.4e-96 356.3 227 79.7
CBR_g57132 Chara braunii HOM05D000251 ORTHO05D007889 1.7e-87 328.6 1060 30.8
Zm00001eb382170 Zea mays HOM05D000251 ORTHO05D007889 2.6e-85 321.2 504 42.9
MCO14G468 Micromonas commoda HOM05D000251 ORTHO05D007889 1.5e-59 235.7 741 30.2
Actinidia16061 Actinidia chinensis HOM05D000251 ORTHO05D007889 4.4e-48 197.6 189 58.7
SHI18972 Sapria himalayana HOM05D000251 ORTHO05D007889 5.0e-44 184.1 106 84.0
Ah.02g114430 Amaranthus hybridus HOM05D000169 ORTHO05D000542 1.9e-43 182.2 107 84.1
Cre13.g568700 Chlamydomonas reinhardtii HOM05D000251 ORTHO05D007889 7.3e-43 180.3 349 37.0
BcaC06g33188 Brassica carinata HOM05D000251 ORTHO05D007889 5.2e-41 174.1 326 41.4
Psat4g067080 Pisum sativum HOM05D000251 ORTHO05D007889 6.4e-39 167.2 232 41.4
CiPaw.15G123400 Carya illinoinensis HOM05D000251 ORTHO05D007889 4.3e-35 154.5 90 85.6
Actinidia16060 Actinidia chinensis HOM05D000251 ORTHO05D007889 2.2e-23 115.5 190 42.6
GSVIVG01008210001 Vitis vinifera HOM05D000251 ORTHO05D007889 7.8e-21 107.1 73 72.6
Cfa026338 Carpinus fangiana HOM05D000251 ORTHO05D007889 1.0e-20 106.7 797 24.6
Rhsim08G0139300 Rhododendron simsii HOM05D000251 ORTHO05D007889 2.5e-19 102.1 262 35.5
Hma1.2p1_0690F.1_g203840 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 1.2e-13 83.2 46 84.8
Lsat_1_v5_gn_4_21520 Lactuca sativa HOM05D003221 ORTHO05D016847 9.3e-06 57.0 135 34.8
HPP92_003096 Vanilla planifolia HOM05D000251 ORTHO05D007889 9.3e-06 57.0 133 34.6


User provided reference genes

Program Settings