Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G167600 Populus trichocarpa HOM05D005584 ORTHO05D006809 2.4e-133 478.8 235 100.0
Sabra09G0130200 Salix brachista HOM05D005584 ORTHO05D006809 6.0e-124 447.6 236 94.5
Manes.12G026800 Manihot esculenta HOM05D005584 ORTHO05D006809 1.7e-99 366.3 236 78.4
COL.COLO4_24203 Corchorus olitorius HOM05D005584 ORTHO05D006809 1.0e-91 340.5 234 72.2
QL03p059496 Quercus lobata HOM05D005584 ORTHO05D006809 7.6e-87 324.3 233 72.1
MD11G1211500 Malus domestica HOM05D005584 ORTHO05D006809 1.3e-86 323.6 236 70.3
GSVIVG01013774001 Vitis vinifera HOM05D005584 ORTHO05D006809 2.9e-86 322.4 236 70.8
Cpa.g.sc69.68 Carica papaya HOM05D005584 ORTHO05D006809 8.4e-86 320.9 231 71.4
Duzib251G0376 Durio zibethinus HOM05D005584 ORTHO05D006809 8.4e-86 320.9 234 68.8
Thecc.02G253500 Theobroma cacao HOM05D005584 ORTHO05D006809 8.4e-86 320.9 234 69.7
Gohir.A01G162200 Gossypium hirsutum HOM05D005584 ORTHO05D006809 1.1e-85 320.5 223 72.2
Gohir.D05G347832 Gossypium hirsutum HOM05D005584 ORTHO05D006809 1.4e-85 320.1 223 72.2
Gohir.D08G021700 Gossypium hirsutum HOM05D005584 ORTHO05D006809 5.5e-85 318.2 223 71.7
TWI18G1102 Tripterygium wilfordii HOM05D005584 ORTHO05D006809 9.3e-85 317.4 238 70.2
Dinv15274 Davidia involucrata HOM05D001482 ORTHO05D001499 2.7e-84 315.8 237 69.6
Ca_28318_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 3.5e-84 315.5 234 70.5
Atru.chr11.2060 Acer truncatum HOM05D005584 ORTHO05D006809 1.0e-83 313.9 239 70.3
Gohir.D01G149500 Gossypium hirsutum HOM05D005584 ORTHO05D006809 5.1e-83 311.6 223 70.4
Ciclev10032655m.g Citrus clementina HOM05D005584 ORTHO05D006809 1.5e-82 310.1 236 68.6
RcHm_v2.0_Chr5g0041131 Rosa chinensis HOM05D005584 ORTHO05D006809 3.3e-82 308.9 236 68.2
Prupe.4G221000 Prunus persica HOM05D005584 ORTHO05D006809 1.3e-81 307.0 236 66.9
arahy.Tifrunner.gnm1.ann1.0L0HR0 Arachis hypogaea HOM05D005584 ORTHO05D006809 1.6e-81 306.6 237 67.5
arahy.Tifrunner.gnm1.ann1.5FW2L6 Arachis hypogaea HOM05D005584 ORTHO05D006809 1.6e-81 306.6 237 67.5
Potri.006G221301 Populus trichocarpa HOM05D005584 ORTHO05D006809 1.6e-81 306.6 225 73.8
TAR374G1289 Trochodendron aralioides HOM05D005584 ORTHO05D006809 8.1e-81 304.3 236 68.6
CiPaw.05G185800 Carya illinoinensis HOM05D005584 ORTHO05D006809 1.4e-80 303.5 237 69.6
Medtr5g077780 Medicago truncatula HOM05D005584 ORTHO05D006809 4.0e-80 302.0 234 69.2
FvH4_3g23340 Fragaria vesca HOM05D005584 ORTHO05D006809 5.3e-80 301.6 236 66.9
Hma1.2p1_0587F.1_g184080 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 9.0e-80 300.8 236 66.5
vmacro01156 Vaccinium macrocarpon HOM05D005584 ORTHO05D006809 1.5e-79 300.1 235 66.8
CSS0030415 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 3.4e-79 298.9 234 67.9
PGR142G0158 Punica granatum HOM05D005584 ORTHO05D006809 3.4e-79 298.9 235 66.8
CANSAT56G2850 Cannabis sativa HOM05D005584 ORTHO05D006809 4.5e-79 298.5 236 63.6
FAN16G0047 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.7e-78 296.6 236 66.9
FAN21G3548 Fragaria x ananassa HOM05D005584 ORTHO05D006809 2.2e-78 296.2 236 66.5
Actinidia08155 Actinidia chinensis HOM05D005584 ORTHO05D006809 4.9e-78 295.0 237 65.8
FAN25G2737 Fragaria x ananassa HOM05D005584 ORTHO05D006809 4.9e-78 295.0 236 66.9
AUR62014068 Chenopodium quinoa HOM05D005584 ORTHO05D006809 7.1e-77 291.2 234 63.7
Haze_12208 Corylus avellana HOM05D005584 ORTHO05D006809 7.1e-77 291.2 234 67.9
Lalb_Chr12g0210051 Lupinus albus HOM05D005584 ORTHO05D006809 7.1e-77 291.2 236 65.3
Psat2g045680 Pisum sativum HOM05D005584 ORTHO05D006809 7.1e-77 291.2 234 66.7
Lj1g0002439 Lotus japonicus HOM05D005584 ORTHO05D006809 1.6e-76 290.0 239 65.7
CSS0021029 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 7.9e-76 287.7 234 65.8
Sopen08g021760 Solanum pennellii HOM05D005584 ORTHO05D006809 2.3e-75 286.2 237 62.0
PGSC0003DMG400033619 Solanum tuberosum HOM05D005584 ORTHO05D006809 3.9e-75 285.4 237 61.6
Lj3g0022996 Lotus japonicus HOM05D005584 ORTHO05D006809 5.1e-75 285.0 239 64.9
CsaV3_2G024710 Cucumis sativus L. HOM05D005584 ORTHO05D006809 1.5e-74 283.5 229 64.6
Nn2g14080 Nelumbo nucifera HOM05D005584 ORTHO05D006809 4.3e-74 282.0 238 63.0
Phvul.011G052800 Phaseolus vulgaris HOM05D005584 ORTHO05D006809 7.4e-74 281.2 234 65.0
Sed0009924 Sechium edule HOM05D005584 ORTHO05D006809 7.4e-74 281.2 234 64.1
Eucgr.K03598 Eucalyptus grandis HOM05D005584 ORTHO05D006809 1.3e-73 280.4 236 63.6
PSO017G5970 Papaver somniferum HOM05D005584 ORTHO05D006809 2.1e-73 279.6 235 62.1
Solyc08g067820.3 Solanum lycopersicum HOM05D005584 ORTHO05D006809 2.1e-73 279.6 237 60.8
Nn4g22723 Nelumbo nucifera HOM05D005584 ORTHO05D006809 2.8e-73 279.3 238 63.4
Aqoxy3G01083 Aquilegia oxysepala HOM05D005584 ORTHO05D006809 3.7e-73 278.9 234 62.0
MBI10_g28000_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 4.8e-73 278.5 242 60.3
Migut.E00177 Erythranthe guttata HOM05D005584 ORTHO05D006809 9.0e-72 274.2 236 61.4
PSO478G2901 Papaver somniferum HOM05D005584 ORTHO05D006809 3.4e-71 272.3 235 61.7
Hund25366 Selenicereus undatus HOM05D005584 ORTHO05D003410 3.4e-71 272.3 285 54.0
BraA07t29554Z Brassica rapa HOM05D005584 ORTHO05D006809 4.5e-71 271.9 232 61.6
Cfa009174 Carpinus fangiana HOM05D005584 ORTHO05D006809 4.5e-71 271.9 209 68.4
FAN11G0752 Fragaria x ananassa HOM05D005584 ORTHO05D006809 4.5e-71 271.9 210 66.2
ECA233G2638 Erigeron canadensis HOM05D005584 ORTHO05D006809 1.0e-70 270.8 236 61.4
MSTRG.2403 Avicennia marina HOM05D005584 ORTHO05D006809 3.8e-70 268.9 239 60.3
A07p18380 Brassica napus HOM05D005584 ORTHO05D006809 6.5e-70 268.1 232 61.2
Lsat_1_v5_gn_9_120260 Lactuca sativa HOM05D005584 ORTHO05D006809 1.1e-69 267.3 225 65.3
AL4G22490 Arabidopsis lyrata HOM05D005584 ORTHO05D006809 1.9e-69 266.5 238 60.9
Peaxi162Scf00105g01417 Petunia axillaris HOM05D005584 ORTHO05D006809 2.5e-69 266.2 214 64.5
BcaC02g10906 Brassica carinata HOM05D005584 ORTHO05D006809 4.2e-69 265.4 232 60.3
Sp4g10620 Schrenkiella parvula HOM05D005584 ORTHO05D006809 4.2e-69 265.4 229 62.4
Thhalv10017205m.g Eutrema salsugineum HOM05D005584 ORTHO05D006809 5.5e-69 265.0 229 61.6
Oeu056410.1 Olea europaea HOM05D005584 ORTHO05D006809 9.3e-69 264.2 224 62.5
C04p23810 Brassica napus HOM05D005584 ORTHO05D006809 1.2e-68 263.8 232 59.9
BolC4t23879H Brassica oleracea HOM05D005584 ORTHO05D006809 6.1e-68 261.5 232 59.5
ClCG08G017930 Citrullus lanatus HOM05D005584 ORTHO05D006809 1.3e-67 260.4 212 64.6
SalBow8G4058 Salvia bowleyana HOM05D005584 ORTHO05D006809 1.3e-67 260.4 231 60.6
Carub.0004s0855 Capsella rubella HOM05D005584 ORTHO05D006809 2.3e-67 259.6 238 60.1
CARHR120490 Cardamine hirsuta HOM05D005584 ORTHO05D006809 3.0e-67 259.2 229 61.1
Rhsim12G0043700 Rhododendron simsii HOM05D005584 ORTHO05D006809 1.1e-66 257.3 243 57.2
Cc08_g15830 Coffea canephora HOM05D005584 ORTHO05D006809 1.9e-66 256.5 223 59.2
VMungo1127G1231 Vigna mungo HOM05D005584 ORTHO05D006809 4.3e-66 255.4 209 64.6
Aa31LG5G8210 Aethionema arabicum HOM05D005584 ORTHO05D006809 9.7e-66 254.2 257 55.3
HanXRQChr12g0371541 Helianthus annuus HOM05D005584 ORTHO05D006809 1.1e-64 250.8 210 62.9
BcaB02g10116 Brassica carinata HOM05D005584 ORTHO05D006809 3.1e-64 249.2 203 62.6
unitig_62.g23668 Utricularia gibba HOM05D005584 ORTHO05D006809 2.2e-62 243.0 226 57.5
Gorai.009G374800 Gossypium raimondii HOM05D005584 ORTHO05D006809 3.8e-62 242.3 223 59.6
Lj6A807T86 Lonicera japonica HOM05D005584 ORTHO05D006809 6.5e-62 241.5 238 58.0
HPP92_004538 Vanilla planifolia HOM05D005584 ORTHO05D006809 3.2e-61 239.2 218 59.6
AT5G27300 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 6.1e-60 235.0 226 58.0
EL10Ac6g13701 Beta vulgaris HOM05D005584 ORTHO05D006809 7.9e-60 234.6 234 54.3
SGA_v2.0_scaffold57G20112 Striga asiatica HOM05D005584 ORTHO05D006809 3.0e-59 232.6 210 59.5
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 3.0e-59 232.6 233 57.9
AUR62005408 Chenopodium quinoa HOM05D005584 ORTHO05D006809 2.5e-58 229.6 234 54.7
Nitab4.5_0006579g0040 Nicotiana tabacum HOM05D005584 ORTHO05D006809 2.5e-58 229.6 192 59.4
Dinv24830 Davidia involucrata HOM05D005584 ORTHO05D006809 9.7e-58 227.6 180 70.0
Glyma.12G050500 Glycine max HOM05D005584 ORTHO05D006809 4.1e-56 222.2 190 62.1
Zm00001eb209860 Zea mays HOM05D005584 ORTHO05D006809 4.1e-56 222.2 270 49.6
Nitab4.5_0000125g0200 Nicotiana tabacum HOM05D005584 ORTHO05D006809 3.4e-55 219.2 162 65.4
Gorai.002G185600 Gossypium raimondii HOM05D005584 ORTHO05D006809 5.0e-54 215.3 224 55.8
SGA_v2.0_scaffold74G24685 Striga asiatica HOM05D005584 ORTHO05D006809 5.0e-54 215.3 199 58.3
Hma1.2p1_0223F.1_g094390 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 3.2e-53 212.6 180 64.4
Lsat_1_v5_gn_8_155560 Lactuca sativa HOM05D005584 ORTHO05D006809 3.6e-52 209.1 209 56.5
ATR1091G072 Amborella trichopoda HOM05D005584 ORTHO05D006809 7.9e-52 208.0 215 55.3
TPR.G25316 Trifolium pratense HOM05D005584 ORTHO05D006809 2.2e-49 199.9 126 76.2
CDE06G1284 Ceratophyllum demersum HOM05D005584 ORTHO05D006809 3.7e-49 199.1 230 50.0
Ah.02g130030 Amaranthus hybridus HOM05D005584 ORTHO05D006809 9.1e-48 194.5 191 56.0
BcaB06g28170 Brassica carinata HOM05D005584 ORTHO05D006809 3.5e-47 192.6 120 73.3
MELO3C010671.2 Cucumis melo HOM05D005584 ORTHO05D006809 7.7e-47 191.4 236 49.2
Gorai.001G098200 Gossypium raimondii HOM05D005584 ORTHO05D006809 1.0e-46 191.0 220 50.5
Sc11g0001080 Simmondsia chinensis HOM05D005584 ORTHO05D006809 5.0e-46 188.7 178 57.3
SEGI_24248 Sequoiadendron giganteum HOM05D005584 ORTHO05D006809 4.7e-44 182.2 265 44.5
DCAR_026533 Daucus carota HOM05D005584 ORTHO05D006809 6.1e-44 181.8 179 55.9
Pp3c16_13430 Physcomitrium patens HOM05D005584 ORTHO05D006809 7.5e-42 174.9 254 44.5
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 9.7e-42 174.5 110 72.7
Mapoly0029s0094 Marchantia polymorpha HOM05D005584 ORTHO05D006809 9.7e-42 174.5 217 45.6
AT2G27790 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 1.4e-40 170.6 198 50.5
Eucgr.D00612 Eucalyptus grandis HOM05D005584 ORTHO05D006809 3.1e-40 169.5 189 51.9
CAN.G21.11 Capsicum annuum HOM05D005584 ORTHO05D006809 1.7e-30 137.1 96 67.7
QL01p007518 Quercus lobata HOM05D005584 ORTHO05D006809 8.0e-28 128.3 177 47.5
COL.COLO4_24201 Corchorus olitorius HOM05D005584 ORTHO05D006809 2.8e-25 119.8 57 93.0
SHI17678 Sapria himalayana HOM05D005584 ORTHO05D006809 7.0e-24 115.2 70 78.6
Hund18879 Selenicereus undatus HOM05D005584 ORTHO05D006809 1.8e-19 100.5 177 40.1
SMO361G0752 Selaginella moellendorffii HOM05D005584 ORTHO05D006809 7.5e-18 95.1 66 59.1
Gorai.004G016800 Gossypium raimondii HOM05D005584 ORTHO05D006809 4.9e-17 92.4 70 68.6
BcaB05g23234 Brassica carinata HOM05D005584 ORTHO05D006809 1.7e-14 84.0 52 75.0
Ca_05838_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 2.3e-14 83.6 53 75.5
CBR_g19306 Chara braunii HOM05D005584 ORTHO05D006809 3.0e-14 83.2 102 45.1
Gohir.D07G091700 Gossypium hirsutum HOM05D005584 ORTHO05D006809 1.9e-13 80.5 92 51.1
Os02g0105000 Oryza sativa ssp. japonica HOM05D005584 ORTHO05D006809 3.3e-13 79.7 58 65.5
MBI12_g21981_MAGBIO Magnolia biondii HOM05D001465 ORTHO05D001434 4.7e-12 75.9 48 72.9
Gohir.A07G086801 Gossypium hirsutum HOM05D005584 ORTHO05D006809 6.2e-12 75.5 76 55.3
MBI02_g44783_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 1.0e-11 74.7 48 72.9
CAN.G414.8 Capsicum annuum HOM05D000928 ORTHO05D001186 1.4e-11 74.3 54 61.1
MBI02_g20871_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 1.4e-11 74.3 48 72.9
MBI02_g25373_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 3.1e-11 73.2 48 70.8
MBI14_g03623_MAGBIO Magnolia biondii HOM05D000013 ORTHO05D006809 3.1e-11 73.2 48 68.8
MBI19_g26621_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 7.5e-10 68.6 43 72.1
MBI14_g10639_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 2.9e-09 66.6 84 46.4
MBI03_g02127_MAGBIO Magnolia biondii HOM05D002786 ORTHO05D006809 3.9e-06 56.2 33 75.8


User provided reference genes

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