Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G043200 Populus trichocarpa HOM05D006184 ORTHO05D007862 0.0e+00 1313.9 638 100.0
Potri.001G249200 Populus trichocarpa HOM05D006184 ORTHO05D007862 0.0e+00 1261.1 639 96.2
Sabra09G0030600 Salix brachista HOM05D006184 ORTHO05D007862 0.0e+00 1210.3 599 97.0
Manes.01G164200 Manihot esculenta HOM05D006184 ORTHO05D007862 0.0e+00 1205.3 648 91.4
Manes.02G121696 Manihot esculenta HOM05D006184 ORTHO05D007862 0.0e+00 1195.3 648 91.0
QL01p026813 Quercus lobata HOM05D006184 ORTHO05D007862 0.0e+00 1188.7 653 88.4
COL.COLO4_19110 Corchorus olitorius HOM05D006184 ORTHO05D007862 0.0e+00 1188.3 652 89.0
Duzib168G0250 Durio zibethinus HOM05D006184 ORTHO05D007862 0.0e+00 1188.3 651 88.6
Gorai.003G124300 Gossypium raimondii HOM05D006184 ORTHO05D007862 0.0e+00 1185.2 652 89.0
Gohir.A03G049500 Gossypium hirsutum HOM05D006184 ORTHO05D007862 0.0e+00 1184.9 652 89.0
Gohir.D03G117800 Gossypium hirsutum HOM05D006184 ORTHO05D007862 0.0e+00 1184.9 651 88.9
Ciclev10027988m.g Citrus clementina HOM05D006184 ORTHO05D007862 0.0e+00 1182.9 647 89.3
Thecc.09G305300 Theobroma cacao HOM05D006184 ORTHO05D007862 0.0e+00 1182.5 651 88.8
Cfa011654 Carpinus fangiana HOM05D006184 ORTHO05D007862 0.0e+00 1176.8 652 88.2
CiPaw.13G080700 Carya illinoinensis HOM05D006184 ORTHO05D007862 0.0e+00 1174.5 650 88.5
Prupe.6G060700 Prunus persica HOM05D006184 ORTHO05D007862 0.0e+00 1172.1 642 88.0
CsaV3_1G036050 Cucumis sativus L. HOM05D006184 ORTHO05D007862 0.0e+00 1171.8 651 87.9
Eucgr.B02273 Eucalyptus grandis HOM05D006184 ORTHO05D007862 0.0e+00 1171.0 649 87.7
Atru.chr3.4272 Acer truncatum HOM05D006184 ORTHO05D007862 0.0e+00 1169.8 654 87.8
FvH4_3g38200 Fragaria vesca HOM05D006184 ORTHO05D007862 0.0e+00 1169.8 655 86.9
ClCG03G000880 Citrullus lanatus HOM05D006184 ORTHO05D007862 0.0e+00 1169.1 649 88.0
PGR102G1950 Punica granatum HOM05D006184 ORTHO05D007862 0.0e+00 1169.1 653 87.9
Lj6g0009842 Lotus japonicus HOM05D006184 ORTHO05D007862 0.0e+00 1168.3 651 87.9
FAN25G1982 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1167.9 655 86.9
RcHm_v2.0_Chr5g0068641 Rosa chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1167.9 655 86.9
FAN21G1896 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1166.8 654 86.7
Phvul.006G065300 Phaseolus vulgaris HOM05D006184 ORTHO05D007862 0.0e+00 1166.4 651 87.6
arahy.Tifrunner.gnm1.ann1.F7MUQP Arachis hypogaea HOM05D006184 ORTHO05D007862 0.0e+00 1166.0 652 87.9
MD11G1080300 Malus domestica HOM05D006184 ORTHO05D007862 0.0e+00 1166.0 650 87.2
MELO3C020563.2 Cucumis melo HOM05D006184 ORTHO05D007862 0.0e+00 1164.1 651 87.4
MD03G1074000 Malus domestica HOM05D006184 ORTHO05D007862 0.0e+00 1164.1 651 86.9
VMungo0540G2418 Vigna mungo HOM05D006184 ORTHO05D007862 0.0e+00 1164.1 651 87.4
Lj1A141T56 Lonicera japonica HOM05D006184 ORTHO05D007862 0.0e+00 1162.5 653 87.0
Ca_14911_v3 Cicer arietinum L. HOM05D006184 ORTHO05D007862 0.0e+00 1161.7 650 87.5
FAN11G1847 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1161.7 655 86.3
arahy.Tifrunner.gnm1.ann1.N1U5TX Arachis hypogaea HOM05D006184 ORTHO05D007862 0.0e+00 1161.4 652 87.6
Ah.15g099710 Amaranthus hybridus HOM05D006184 ORTHO05D007862 0.0e+00 1161.0 651 87.6
FAN16G1207 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1160.6 648 87.2
Medtr3g462950 Medicago truncatula HOM05D006184 ORTHO05D007862 0.0e+00 1159.8 651 87.7
Sed0012033 Sechium edule HOM05D006184 ORTHO05D007862 0.0e+00 1158.7 651 87.1
EL10Ac7g16128 Beta vulgaris HOM05D006184 ORTHO05D007862 0.0e+00 1157.1 652 86.7
CSS0002743 Camellia sinensis var. sinensis HOM05D006184 ORTHO05D007862 0.0e+00 1156.4 644 87.6
AUR62001683 Chenopodium quinoa HOM05D006184 ORTHO05D007862 0.0e+00 1156.4 652 86.7
Ah.08g220740 Amaranthus hybridus HOM05D006184 ORTHO05D007862 0.0e+00 1155.6 610 90.3
Lalb_Chr17g0345001 Lupinus albus HOM05D006184 ORTHO05D007862 0.0e+00 1154.0 650 87.1
Medtr3g462970 Medicago truncatula HOM05D006184 ORTHO05D007862 0.0e+00 1153.7 650 86.9
Psat5g162200 Pisum sativum HOM05D006184 ORTHO05D007862 0.0e+00 1152.5 650 87.2
AUR62020099 Chenopodium quinoa HOM05D006184 ORTHO05D007862 0.0e+00 1151.3 653 86.2
HanXRQChr13g0388411 Helianthus annuus HOM05D006184 ORTHO05D007862 0.0e+00 1151.0 651 86.3
DCAR_007390 Daucus carota HOM05D006184 ORTHO05D007862 0.0e+00 1148.3 636 87.7
TAR633G0598 Trochodendron aralioides HOM05D006184 ORTHO05D007862 0.0e+00 1148.3 639 87.3
Nn2g13623 Nelumbo nucifera HOM05D006184 ORTHO05D007862 0.0e+00 1147.5 596 91.1
GSVIVG01024789001 Vitis vinifera HOM05D006184 ORTHO05D007862 0.0e+00 1147.5 642 87.5
CARHR122950 Cardamine hirsuta HOM05D006184 ORTHO05D007862 0.0e+00 1146.7 648 86.0
Sc12g0000880 Simmondsia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1144.4 648 85.3
Hma1.2p1_0227F.1_g096310 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 0.0e+00 1144.0 646 85.8
Oeu009379.1 Olea europaea HOM05D006184 ORTHO05D007862 0.0e+00 1144.0 649 85.5
TWI79G1750 Tripterygium wilfordii HOM05D006184 ORTHO05D007862 0.0e+00 1144.0 611 89.0
Hund04886 Selenicereus undatus HOM05D006184 ORTHO05D007862 0.0e+00 1143.6 651 84.9
Carub.0004s1072 Capsella rubella HOM05D006184 ORTHO05D007862 0.0e+00 1143.3 656 85.4
ECA248G3465 Erigeron canadensis HOM05D006184 ORTHO05D007862 0.0e+00 1142.9 650 86.2
AL4G24380 Arabidopsis lyrata HOM05D006184 ORTHO05D007862 0.0e+00 1142.1 593 91.2
Cc01_g13950 Coffea canephora HOM05D006184 ORTHO05D007862 0.0e+00 1141.3 649 85.5
Glyma.18G065700 Glycine max HOM05D006184 ORTHO05D007862 0.0e+00 1141.3 648 86.3
Actinidia38827 Actinidia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1140.6 647 86.2
Sc06g0008420 Simmondsia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1140.2 652 85.3
AT2G29630 Arabidopsis thaliana HOM05D006184 ORTHO05D007862 0.0e+00 1139.0 652 85.4
SalBow2G2183 Salvia bowleyana HOM05D006184 ORTHO05D007862 0.0e+00 1138.3 647 85.5
ATR0564G389 Amborella trichopoda HOM05D006184 ORTHO05D007862 0.0e+00 1137.5 590 91.5
Aa31LG5G7380 Aethionema arabicum HOM05D006184 ORTHO05D007862 0.0e+00 1137.1 650 84.9
Cpa.g.sc112.53 Carica papaya HOM05D006184 ORTHO05D007862 0.0e+00 1137.1 651 86.0
Nitab4.5_0001970g0070 Nicotiana tabacum HOM05D006184 ORTHO05D007862 0.0e+00 1137.1 648 84.9
Aqoxy4G02661 Aquilegia oxysepala HOM05D006184 ORTHO05D007862 0.0e+00 1135.9 644 85.4
Rhsim13G0072000 Rhododendron simsii HOM05D006184 ORTHO05D007862 0.0e+00 1135.9 651 85.1
Sp4g12340 Schrenkiella parvula HOM05D006184 ORTHO05D007862 0.0e+00 1135.9 650 85.4
BcaB02g10267 Brassica carinata HOM05D006184 ORTHO05D007862 0.0e+00 1134.8 630 86.8
BcaC02g11044 Brassica carinata HOM05D006184 ORTHO05D007862 0.0e+00 1134.4 655 84.6
C04p21210 Brassica napus HOM05D006184 ORTHO05D007862 0.0e+00 1134.4 655 84.6
Thhalv10016370m.g Eutrema salsugineum HOM05D006184 ORTHO05D007862 0.0e+00 1134.0 649 85.4
Nitab4.5_0000102g0140 Nicotiana tabacum HOM05D006184 ORTHO05D007862 0.0e+00 1133.6 648 84.6
HanXRQChr10g0298731 Helianthus annuus HOM05D006184 ORTHO05D007862 0.0e+00 1132.1 647 85.3
BraA05t20491Z Brassica rapa HOM05D006184 ORTHO05D007862 0.0e+00 1131.3 655 84.4
MSTRG.24765 Avicennia marina HOM05D006184 ORTHO05D007862 0.0e+00 1130.9 649 84.7
A05p15770 Brassica napus HOM05D006184 ORTHO05D007862 0.0e+00 1129.8 655 84.3
BolC4t23646H Brassica oleracea HOM05D006184 ORTHO05D007862 0.0e+00 1129.4 655 84.1
Solyc06g006080.3 Solanum lycopersicum HOM05D006184 ORTHO05D007862 0.0e+00 1128.6 648 84.6
Sopen06g002030 Solanum pennellii HOM05D006184 ORTHO05D007862 0.0e+00 1128.6 648 84.6
CDE03G0407 Ceratophyllum demersum HOM05D006184 ORTHO05D007862 0.0e+00 1125.9 605 87.9
PGSC0003DMG400004151 Solanum tuberosum HOM05D006184 ORTHO05D007862 0.0e+00 1125.9 648 84.3
MBI05_g03463_MAGBIO Magnolia biondii HOM05D006184 ORTHO05D007862 0.0e+00 1123.2 649 84.9
Glyma.11G176200 Glycine max HOM05D006184 ORTHO05D007862 0.0e+00 1122.5 646 85.1
Lsat_1_v5_gn_5_158421 Lactuca sativa HOM05D006184 ORTHO05D007862 0.0e+00 1121.7 645 84.7
Peaxi162Scf00216g00033 Petunia axillaris HOM05D006184 ORTHO05D007862 0.0e+00 1119.0 650 84.0
Migut.G00281 Erythranthe guttata HOM05D006184 ORTHO05D007862 0.0e+00 1118.2 598 89.6
Peaxi162Scf00451g00511 Petunia axillaris HOM05D006184 ORTHO05D007862 0.0e+00 1117.1 650 83.7
Oeu049272.2 Olea europaea HOM05D006184 ORTHO05D007862 0.0e+00 1114.4 581 90.0
CDE04G0688 Ceratophyllum demersum HOM05D006184 ORTHO05D007862 0.0e+00 1114.0 587 89.6
Os03g0679700 Oryza sativa ssp. japonica HOM05D006184 ORTHO05D007862 0.0e+00 1112.8 614 86.8
Zm00001eb051950 Zea mays HOM05D006184 ORTHO05D007862 0.0e+00 1108.6 574 90.2
Haze_24258 Corylus avellana HOM05D006184 ORTHO05D007862 0.0e+00 1082.8 652 82.8
SGA_v2.0_scaffold142G35644 Striga asiatica HOM05D006184 ORTHO05D007862 1.5e-310 1068.9 648 79.5
CAN.G780.2 Capsicum annuum HOM05D006184 ORTHO05D007862 7.3e-310 1066.6 602 85.0
Dinv28618 Davidia involucrata HOM05D006184 ORTHO05D007862 4.8e-309 1063.9 597 86.9
TPR.G13280 Trifolium pratense HOM05D006184 ORTHO05D007862 3.3e-302 1041.2 650 80.5
Pp3c16_8630 Physcomitrium patens HOM05D006184 ORTHO05D007862 7.4e-302 1040.0 569 85.9
AagrBONN_evm.TU.Sc2ySwM_117.2039 Anthoceros agrestis HOM05D006184 ORTHO05D007862 2.1e-301 1038.5 584 83.9
SHI12345 Sapria himalayana HOM05D006184 ORTHO05D007862 2.1e-301 1038.5 676 76.5
HPP92_012628 Vanilla planifolia HOM05D006184 ORTHO05D007862 4.8e-301 1037.3 543 89.5
Mapoly0078s0008 Marchantia polymorpha HOM05D006184 ORTHO05D007862 7.6e-299 1030.0 640 77.3
Pp3c25_5720 Physcomitrium patens HOM05D006184 ORTHO05D007862 1.4e-297 1025.8 634 78.1
SMO272G0033 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 3.4e-291 1004.6 562 83.6
SMO165G0141 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 9.3e-289 996.5 553 84.1
Cfa015458 Carpinus fangiana HOM05D006184 ORTHO05D007862 1.5e-283 979.2 616 79.7
CBR_g30996 Chara braunii HOM05D006184 ORTHO05D007862 5.9e-251 870.9 474 86.1
Cre05.g240850 Chlamydomonas reinhardtii HOM05D006184 ORTHO05D007862 8.9e-231 803.9 513 74.3
Sabra16G0151300 Salix brachista HOM05D006184 ORTHO05D007862 1.4e-223 780.0 412 93.4
Haze_26876 Corylus avellana HOM05D006184 ORTHO05D007862 4.0e-191 672.2 581 59.2
vmacro02987 Vaccinium macrocarpon HOM05D006184 ORTHO05D007862 6.2e-184 648.3 345 88.7
RcHm_v2.0_Chr5g0068681 Rosa chinensis HOM05D006184 ORTHO05D007862 2.9e-149 533.1 267 94.8
SMO165G0069 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 4.1e-127 459.5 551 47.7
SEGI_15306 Sequoiadendron giganteum HOM05D006184 ORTHO05D007862 6.2e-75 286.2 225 61.8
Nn2g11393 Nelumbo nucifera HOM05D006184 ORTHO05D007862 2.3e-69 267.7 125 96.8
Nn2g11394 Nelumbo nucifera HOM05D006184 ORTHO05D049308 8.5e-48 196.1 104 86.5
RcHm_v2.0_Chr5g0068691 Rosa chinensis HOM05D006184 ORTHO05D049308 1.1e-42 179.1 97 88.7
Actinidia16074 Actinidia chinensis HOM05D006184 ORTHO05D007862 6.7e-37 159.8 150 58.7
Nn2g11392 Nelumbo nucifera HOM05D006184 ORTHO05D007862 6.3e-35 153.3 101 74.3
Hma1.2p1_2020F.1_g311280 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 1.5e-20 105.5 53 92.5
Hma1.2p1_0315F.1_g122560 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 1.7e-19 102.1 53 90.6
Ah.02g117460 Amaranthus hybridus HOM05D000595 ORTHO05D004141 3.9e-08 64.3 32 90.6


User provided reference genes

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