Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G106900 Populus trichocarpa HOM05D004365 ORTHO05D005123 8.1e-66 253.4 115 100.0
Sabra08G0080800 Salix brachista HOM05D004365 ORTHO05D005123 3.1e-65 251.5 115 99.1
Sabra10G0110500 Salix brachista HOM05D004365 ORTHO05D005123 1.1e-62 243.0 115 94.8
HPP92_002026 Vanilla planifolia HOM05D004365 ORTHO05D005123 2.3e-60 235.3 115 88.7
Sed0006030 Sechium edule HOM05D004365 ORTHO05D005123 3.9e-60 234.6 115 89.6
Ciclev10006256m.g Citrus clementina HOM05D004365 ORTHO05D005123 5.1e-60 234.2 115 90.4
CANSAT54G2312 Cannabis sativa HOM05D004365 ORTHO05D005123 6.6e-60 233.8 115 89.6
Lsat_1_v5_gn_6_116841 Lactuca sativa HOM05D004365 ORTHO05D005123 8.6e-60 233.4 115 90.4
CiPaw.01G139700 Carya illinoinensis HOM05D004365 ORTHO05D005123 1.1e-59 233.0 115 88.7
Lalb_Chr18g0058831 Lupinus albus HOM05D004365 ORTHO05D005123 1.1e-59 233.0 115 88.7
RcHm_v2.0_Chr4g0424591 Rosa chinensis HOM05D004365 ORTHO05D005123 1.1e-59 233.0 115 88.7
ClCG05G006460 Citrullus lanatus HOM05D004365 ORTHO05D005123 1.5e-59 232.6 115 88.7
Duzib052G0793 Durio zibethinus HOM05D004365 ORTHO05D005123 1.5e-59 232.6 115 88.7
Lj6g0010863 Lotus japonicus HOM05D004365 ORTHO05D005123 1.5e-59 232.6 115 89.6
Prupe.1G122000 Prunus persica HOM05D004365 ORTHO05D005123 1.5e-59 232.6 115 87.8
QL06p011635 Quercus lobata HOM05D004365 ORTHO05D005123 1.5e-59 232.6 114 88.6
Sed0001961 Sechium edule HOM05D004365 ORTHO05D005123 1.5e-59 232.6 115 88.7
Ah.13g072000 Amaranthus hybridus HOM05D004365 ORTHO05D005123 1.9e-59 232.3 115 89.6
Nn4g25611 Nelumbo nucifera HOM05D004365 ORTHO05D005123 1.9e-59 232.3 115 88.7
Gohir.A01G034300 Gossypium hirsutum HOM05D004365 ORTHO05D005123 2.5e-59 231.9 115 88.7
Gohir.D01G023535 Gossypium hirsutum HOM05D004365 ORTHO05D005123 2.5e-59 231.9 115 88.7
Gorai.002G030000 Gossypium raimondii HOM05D004365 ORTHO05D005123 2.5e-59 231.9 115 88.7
Manes.15G005400 Manihot esculenta HOM05D004365 ORTHO05D005123 4.3e-59 231.1 115 88.7
Oeu016485.1 Olea europaea HOM05D004365 ORTHO05D005123 4.3e-59 231.1 115 88.7
ECA246G3323 Erigeron canadensis HOM05D004365 ORTHO05D005123 5.6e-59 230.7 115 87.8
Thecc.04G297700 Theobroma cacao HOM05D004365 ORTHO05D005123 5.6e-59 230.7 115 87.8
SMO174G0170 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 7.3e-59 230.3 114 88.6
Ca_01870_v3 Cicer arietinum L. HOM05D004365 ORTHO05D005123 9.6e-59 229.9 115 88.7
Medtr2g034520 Medicago truncatula HOM05D004365 ORTHO05D005123 9.6e-59 229.9 115 89.6
Phvul.009G256100 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 9.6e-59 229.9 115 88.7
TAR365G0998 Trochodendron aralioides HOM05D004365 ORTHO05D005123 9.6e-59 229.9 115 87.8
TWI73G0828 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 1.2e-58 229.6 115 89.6
Haze_01277 Corylus avellana HOM05D004365 ORTHO05D005123 1.6e-58 229.2 115 87.0
HanXRQChr05g0145921 Helianthus annuus HOM05D004365 ORTHO05D005123 1.6e-58 229.2 115 87.0
TPR.G5757 Trifolium pratense HOM05D004365 ORTHO05D005123 1.6e-58 229.2 115 89.6
CSS0008168 Camellia sinensis var. sinensis HOM05D004365 ORTHO05D005123 2.1e-58 228.8 115 87.0
DCAR_023347 Daucus carota HOM05D004365 ORTHO05D005123 2.1e-58 228.8 115 87.8
Duzib212G0477 Durio zibethinus HOM05D004365 ORTHO05D005123 2.1e-58 228.8 115 87.8
Hma1.2p1_0013F.1_g008720 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 2.1e-58 228.8 115 86.1
Mapoly0028s0097 Marchantia polymorpha HOM05D004365 ORTHO05D005123 2.1e-58 228.8 115 89.6
PSO761G0124 Papaver somniferum HOM05D004365 ORTHO05D005123 2.8e-58 228.4 115 86.1
unitig_22.g6354 Utricularia gibba HOM05D004365 ORTHO05D005123 2.8e-58 228.4 115 87.8
GSVIVG01035016001 Vitis vinifera HOM05D004365 ORTHO05D005123 2.8e-58 228.4 115 87.0
Actinidia13364 Actinidia chinensis HOM05D004365 ORTHO05D005123 3.6e-58 228.0 115 87.0
Aqoxy2G02775 Aquilegia oxysepala HOM05D004365 ORTHO05D005123 4.7e-58 227.6 115 87.0
FvH4_4g19480 Fragaria vesca HOM05D004365 ORTHO05D005123 4.7e-58 227.6 115 86.1
FAN07G2773 Fragaria x ananassa HOM05D004365 ORTHO05D005123 4.7e-58 227.6 115 86.1
MSTRG.21775 Avicennia marina HOM05D004365 ORTHO05D005123 8.1e-58 226.9 115 87.0
Cc03_g00970 Coffea canephora HOM05D004365 ORTHO05D005123 8.1e-58 226.9 115 87.8
Glyma.09G037400 Glycine max HOM05D004365 ORTHO05D005123 8.1e-58 226.9 115 86.1
Nitab4.5_0000647g0090 Nicotiana tabacum HOM05D004365 ORTHO05D005123 8.1e-58 226.9 115 87.0
Peaxi162Scf00164g01133 Petunia axillaris HOM05D004365 ORTHO05D005123 8.1e-58 226.9 115 87.0
PGR004G2507 Punica granatum HOM05D004365 ORTHO05D005123 8.1e-58 226.9 115 87.0
Solyc05g053430.3 Solanum lycopersicum HOM05D004365 ORTHO05D005123 8.1e-58 226.9 115 87.0
Sopen05g031930 Solanum pennellii HOM05D004365 ORTHO05D005123 8.1e-58 226.9 115 87.0
PGSC0003DMG400027213 Solanum tuberosum HOM05D004365 ORTHO05D005123 8.1e-58 226.9 115 87.0
AL3G29960 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 1.1e-57 226.5 115 85.2
AT3G16980 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 1.1e-57 226.5 115 85.2
BcaB08g34342 Brassica carinata HOM05D004365 ORTHO05D005123 1.1e-57 226.5 115 86.1
BcaC07g37975 Brassica carinata HOM05D004365 ORTHO05D005123 1.1e-57 226.5 115 86.1
A08p12300 Brassica napus HOM05D004365 ORTHO05D005123 1.1e-57 226.5 115 86.1
BolC8t48354H Brassica oleracea HOM05D004365 ORTHO05D005123 1.1e-57 226.5 115 86.1
MD13G1156200 Malus domestica HOM05D004365 ORTHO05D005123 1.1e-57 226.5 115 86.1
PSO210G6722 Papaver somniferum HOM05D004365 ORTHO05D005123 1.1e-57 226.5 115 85.2
THA.LOC104820300 Tarenaya hassleriana HOM05D004365 ORTHO05D005123 1.1e-57 226.5 115 86.1
Carub.0003s1673 Capsella rubella HOM05D004365 ORTHO05D005123 1.4e-57 226.1 115 85.2
Sc05g0009630 Simmondsia chinensis HOM05D004365 ORTHO05D005123 1.4e-57 226.1 115 87.0
SMO364G0316 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 1.8e-57 225.7 115 87.0
CDE02G0371 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 2.4e-57 225.3 115 83.5
Psat6g078760 Pisum sativum HOM05D004365 ORTHO05D005123 2.4e-57 225.3 115 87.8
Aa31LG8G4020 Aethionema arabicum HOM05D004365 ORTHO05D005123 3.1e-57 224.9 115 85.2
CDE09G0896 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 3.1e-57 224.9 115 82.6
MD16G1157100 Malus domestica HOM05D004365 ORTHO05D005123 3.1e-57 224.9 115 84.3
Eucgr.H02666 Eucalyptus grandis HOM05D004365 ORTHO05D005123 4.0e-57 224.6 115 85.2
BcaC09g50324 Brassica carinata HOM05D004365 ORTHO05D005123 8.9e-57 223.4 115 84.3
BcaNung00211 Brassica carinata HOM05D004365 ORTHO05D005123 8.9e-57 223.4 115 84.3
A01p21300 Brassica napus HOM05D004365 ORTHO05D005123 8.9e-57 223.4 115 84.3
Thhalv10021989m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 1.2e-56 223.0 115 84.3
Cpa.g.sc9.86 Carica papaya HOM05D004365 ORTHO05D005123 1.5e-56 222.6 115 84.3
Glyma.15G142700 Glycine max HOM05D004365 ORTHO05D005123 2.6e-56 221.9 115 84.3
Pp3c18_17910 Physcomitrium patens HOM05D004365 ORTHO05D005123 2.6e-56 221.9 115 85.2
AL7G38770 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 4.4e-56 221.1 115 83.5
AT4G16265 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 4.4e-56 221.1 115 83.5
Carub.0007s2525 Capsella rubella HOM05D004365 ORTHO05D005123 4.4e-56 221.1 115 83.5
SEGI_37796 Sequoiadendron giganteum HOM05D004365 ORTHO05D005123 7.6e-56 220.3 115 82.6
vmacro15189 Vaccinium macrocarpon HOM05D004365 ORTHO05D005123 9.9e-56 219.9 135 75.6
Thhalv10026603m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 1.7e-55 219.2 115 82.6
CARHR222650 Cardamine hirsuta HOM05D004365 ORTHO05D005123 8.4e-55 216.9 115 80.9
Dinv44302 Davidia involucrata HOM05D004365 ORTHO05D005123 1.9e-54 215.7 115 81.7
Nitab4.5_0006365g0010 Nicotiana tabacum HOM05D004365 ORTHO05D005123 2.4e-54 215.3 134 74.6
CARHR092230 Cardamine hirsuta HOM05D004365 ORTHO05D005123 3.2e-54 214.9 115 82.6
Zm00001eb088460 Zea mays HOM05D004365 ORTHO05D005123 1.6e-53 212.6 115 78.3
TWI09G0163 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 2.1e-53 212.2 115 82.6
arahy.Tifrunner.gnm1.ann1.79Y4XM Arachis hypogaea HOM05D004365 ORTHO05D005123 6.0e-53 210.7 112 84.8
arahy.Tifrunner.gnm1.ann1.C4ZZV2 Arachis hypogaea HOM05D004365 ORTHO05D005123 6.0e-53 210.7 112 84.8
A09p28560 Brassica napus HOM05D004365 ORTHO05D005123 8.7e-52 206.8 113 79.6
BraA09t38417Z Brassica rapa HOM05D004365 ORTHO05D005123 8.7e-52 206.8 113 79.6
Hund03115 Selenicereus undatus HOM05D004365 ORTHO05D005123 1.1e-51 206.5 105 86.7
Migut.N00047 Erythranthe guttata HOM05D004365 ORTHO05D005123 1.9e-51 205.7 105 85.7
EL10Ac3g05464 Beta vulgaris HOM05D004365 ORTHO05D005123 3.3e-51 204.9 115 80.0
BraA08t33228Z Brassica rapa HOM05D004365 ORTHO05D005123 7.3e-51 203.8 105 84.8
Hund11961 Selenicereus undatus HOM05D004365 ORTHO05D005123 7.3e-51 203.8 105 84.8
Os12g0560400 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 2.8e-50 201.8 105 85.7
Os03g0102200 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 3.6e-50 201.4 115 74.8
HPP92_005120 Vanilla planifolia HOM05D004365 ORTHO05D005123 3.6e-50 201.4 114 75.4
BolC1t02605H Brassica oleracea HOM05D004365 ORTHO05D005123 6.2e-50 200.7 105 82.9
SpUn0413_0020 Schrenkiella parvula HOM05D004365 ORTHO05D005123 3.1e-49 198.4 105 81.9
arahy.Tifrunner.gnm1.ann1.MX4EIU Arachis hypogaea HOM05D004365 ORTHO05D005123 5.3e-49 197.6 114 73.7
Manes.03G202800 Manihot esculenta HOM05D004365 ORTHO05D005123 5.3e-49 197.6 115 76.5
BcaC04g21057 Brassica carinata HOM05D004365 ORTHO05D005123 1.5e-48 196.1 112 75.9
C09p36150 Brassica napus HOM05D004365 ORTHO05D005123 2.0e-48 195.7 112 75.9
BolC9t56454H Brassica oleracea HOM05D004365 ORTHO05D005123 2.0e-48 195.7 112 75.9
Lalb_Chr08g0234431 Lupinus albus HOM05D004365 ORTHO05D005123 3.4e-48 194.9 112 75.0
SalBow2G2782 Salvia bowleyana HOM05D004365 ORTHO05D005123 4.4e-48 194.5 128 71.9
Glyma.07G241200 Glycine max HOM05D004365 ORTHO05D005123 2.9e-47 191.8 115 70.4
Lj4g0028172 Lotus japonicus HOM05D004365 ORTHO05D005123 6.4e-47 190.7 115 72.2
Sabra10G0110300 Salix brachista HOM05D004365 ORTHO05D005123 7.1e-46 187.2 115 79.1
Phvul.003G112600 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 2.1e-45 185.7 115 67.8
Sp7g14780 Schrenkiella parvula HOM05D004365 ORTHO05D005123 7.9e-45 183.7 130 66.2
TWI53G1753 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 7.9e-45 183.7 114 70.2
Dinv15193 Davidia involucrata HOM05D004365 ORTHO05D005123 2.3e-44 182.2 98 83.7
Mapoly0087s0071 Marchantia polymorpha HOM05D004365 ORTHO05D005123 3.3e-43 178.3 115 68.7
TWI53G0542 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 1.3e-42 176.4 114 67.5
VMungo1215G2752 Vigna mungo HOM05D004365 ORTHO05D005123 1.6e-42 176.0 115 65.2
VMungo1309G0143 Vigna mungo HOM05D004365 ORTHO05D005123 9.0e-41 170.2 88 87.5
DCAR_027008 Daucus carota HOM05D004365 ORTHO05D005123 1.5e-40 169.5 180 51.1
arahy.Tifrunner.gnm1.ann1.2XVX11 Arachis hypogaea HOM05D004365 ORTHO05D005123 4.5e-40 167.9 114 65.8
Os07g0615800 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 1.7e-39 166.0 115 58.3
ATR0665G356 Amborella trichopoda HOM05D004365 ORTHO05D005123 3.8e-39 164.9 88 84.1
AUR62041403 Chenopodium quinoa HOM05D004365 ORTHO05D005123 2.4e-38 162.2 93 78.5
Rhsim02G0004900 Rhododendron simsii HOM05D004365 ORTHO05D005123 1.6e-37 159.5 90 80.0
TPR.G10905 Trifolium pratense HOM05D004365 ORTHO05D005123 2.7e-37 158.7 88 81.8
FAN12G3053 Fragaria x ananassa HOM05D004365 ORTHO05D005123 4.6e-37 157.9 80 86.2
AUR62016130 Chenopodium quinoa HOM05D004365 ORTHO05D005123 6.0e-37 157.5 80 86.2
SGA_v2.0_scaffold119G32662 Striga asiatica HOM05D004365 ORTHO05D005123 7.9e-37 157.1 84 84.5
Potri.010G142500 Populus trichocarpa HOM05D004365 ORTHO05D005123 1.0e-36 156.8 94 74.5
FvH4_3g15650 Fragaria vesca HOM05D004365 ORTHO05D005123 1.8e-36 156.0 80 86.2
Atru.chr4.3028 Acer truncatum HOM05D004365 ORTHO05D005123 2.3e-36 155.6 79 87.3
BcaB04g18375 Brassica carinata HOM05D004365 ORTHO05D005123 8.7e-36 153.7 80 83.8
BraA01t02037Z Brassica rapa HOM05D004365 ORTHO05D005123 8.7e-36 153.7 81 82.7
FAN12G1077 Fragaria x ananassa HOM05D004365 ORTHO05D005123 1.1e-35 153.3 82 81.7
COL.COLO4_34649 Corchorus olitorius HOM05D001765 ORTHO05D005123 4.8e-34 147.9 77 87.0
Eucgr.H02672 Eucalyptus grandis HOM05D004365 ORTHO05D005123 4.8e-34 147.9 84 78.6
Zm00001eb086380 Zea mays HOM05D004365 ORTHO05D005123 3.1e-33 145.2 80 77.5
Zm00001eb138580 Zea mays HOM05D004365 ORTHO05D005123 9.0e-33 143.7 81 75.3
Zm00001eb230190 Zea mays HOM05D004365 ORTHO05D005123 1.2e-32 143.3 81 76.5
Haze_26633 Corylus avellana HOM05D004365 ORTHO05D005123 1.9e-30 136.0 110 53.6
MCO01G087 Micromonas commoda HOM05D004365 ORTHO05D005123 1.0e-28 130.2 111 52.3
AL7G38230 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 4.5e-24 114.8 61 78.7
Zm00001eb270680 Zea mays HOM05D004365 ORTHO05D005123 1.4e-22 109.8 64 76.6
Zm00001eb327460 Zea mays HOM05D004365 ORTHO05D005123 1.2e-21 106.7 97 48.5
SHI00177 Sapria himalayana HOM05D004365 ORTHO05D005123 3.0e-20 102.1 71 67.6
AagrBONN_evm.TU.Sc2ySwM_117.3306 Anthoceros agrestis HOM05D004365 ORTHO05D005123 6.7e-20 100.9 114 42.1
Cre12.g505750 Chlamydomonas reinhardtii HOM05D004365 ORTHO05D005123 1.5e-19 99.8 113 44.2
PRCOL_00000204 Prasinoderma coloniale HOM05D004365 ORTHO05D005123 4.3e-19 98.2 113 46.0
Hma1.2p1_0096F.1_g047650 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 2.8e-18 95.5 56 75.0
BcaB01g01499 Brassica carinata HOM05D004365 ORTHO05D005123 3.1e-17 92.0 62 66.1
Zm00001eb137030 Zea mays HOM05D004365 ORTHO05D005123 3.4e-16 88.6 54 75.9
Cfa024902 Carpinus fangiana HOM05D004365 ORTHO05D005123 5.0e-15 84.7 64 53.1
Mapoly0020s0069 Marchantia polymorpha HOM05D004365 ORTHO05D005123 1.1e-14 83.6 116 35.3
Hma1.2p1_0234F.1_g098400 Hydrangea macrophylla HOM05D001088 ORTHO05D005123 7.9e-13 77.4 48 70.8
SMO304G0059 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 1.1e-11 73.6 104 39.4
AagrBONN_evm.TU.Sc2ySwM_344.170 Anthoceros agrestis HOM05D001942 ORTHO05D001996 2.8e-10 68.9 105 34.3
Pp3c15_5550 Physcomitrium patens HOM05D006029 ORTHO05D007439 2.2e-07 59.3 112 32.1
Os11g0676650 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 3.8e-07 58.5 37 70.3
Ciclev10022957m.g Citrus clementina HOM05D006029 ORTHO05D007439 5.0e-07 58.2 117 31.6
PGR102G2016 Punica granatum HOM05D006029 ORTHO05D007439 5.0e-07 58.2 115 29.6
Nn1g00349 Nelumbo nucifera HOM05D006029 ORTHO05D007439 1.9e-06 56.2 113 31.9
TAR374G1259 Trochodendron aralioides HOM05D006029 ORTHO05D007439 1.9e-06 56.2 112 29.5
AagrBONN_evm.TU.Sc2ySwM_117.3630 Anthoceros agrestis HOM05D006029 ORTHO05D007439 2.5e-06 55.8 112 33.0
EL10Ac5g10924 Beta vulgaris HOM05D006029 ORTHO05D007439 3.2e-06 55.5 113 26.5


User provided reference genes

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