Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G221301 Populus trichocarpa HOM05D005584 ORTHO05D006809 2.0e-115 419.1 206 100.0
Potri.009G167600 Populus trichocarpa HOM05D005584 ORTHO05D006809 1.4e-81 306.6 225 73.8
Sabra09G0130200 Salix brachista HOM05D005584 ORTHO05D006809 1.0e-79 300.4 226 71.7
Manes.12G026800 Manihot esculenta HOM05D005584 ORTHO05D006809 1.5e-62 243.4 224 60.3
QL03p059496 Quercus lobata HOM05D005584 ORTHO05D006809 8.5e-58 227.6 218 58.7
COL.COLO4_24203 Corchorus olitorius HOM05D005584 ORTHO05D006809 1.1e-57 227.3 223 55.2
Duzib251G0376 Durio zibethinus HOM05D005584 ORTHO05D006809 2.0e-54 216.5 223 54.3
Thecc.02G253500 Theobroma cacao HOM05D005584 ORTHO05D006809 3.3e-54 215.7 223 55.6
Ciclev10032655m.g Citrus clementina HOM05D005584 ORTHO05D006809 2.2e-53 213.0 223 54.7
Gohir.A01G162200 Gossypium hirsutum HOM05D005584 ORTHO05D006809 4.8e-53 211.8 223 52.9
Gohir.D05G347832 Gossypium hirsutum HOM05D005584 ORTHO05D006809 4.8e-53 211.8 222 53.6
TWI18G1102 Tripterygium wilfordii HOM05D005584 ORTHO05D006809 6.3e-53 211.5 225 55.6
Gohir.D08G021700 Gossypium hirsutum HOM05D005584 ORTHO05D006809 8.2e-53 211.1 223 52.9
Gohir.D01G149500 Gossypium hirsutum HOM05D005584 ORTHO05D006809 9.1e-52 207.6 226 51.8
Cpa.g.sc69.68 Carica papaya HOM05D005584 ORTHO05D006809 4.5e-51 205.3 225 53.8
MD11G1211500 Malus domestica HOM05D005584 ORTHO05D006809 4.5e-51 205.3 223 52.9
GSVIVG01013774001 Vitis vinifera HOM05D005584 ORTHO05D006809 5.9e-51 204.9 214 55.1
arahy.Tifrunner.gnm1.ann1.0L0HR0 Arachis hypogaea HOM05D005584 ORTHO05D006809 7.7e-51 204.5 218 53.2
arahy.Tifrunner.gnm1.ann1.5FW2L6 Arachis hypogaea HOM05D005584 ORTHO05D006809 7.7e-51 204.5 218 53.2
Atru.chr11.2060 Acer truncatum HOM05D005584 ORTHO05D006809 1.7e-50 203.4 214 56.1
Ca_28318_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 5.0e-50 201.8 220 53.6
Dinv15274 Davidia involucrata HOM05D001482 ORTHO05D001499 4.2e-49 198.7 222 50.9
PGR142G0158 Punica granatum HOM05D005584 ORTHO05D006809 1.2e-48 197.2 223 53.4
CiPaw.05G185800 Carya illinoinensis HOM05D005584 ORTHO05D006809 2.1e-48 196.4 220 54.5
RcHm_v2.0_Chr5g0041131 Rosa chinensis HOM05D005584 ORTHO05D006809 2.1e-48 196.4 223 51.1
TAR374G1289 Trochodendron aralioides HOM05D005584 ORTHO05D006809 3.6e-48 195.7 225 53.3
Lalb_Chr12g0210051 Lupinus albus HOM05D005584 ORTHO05D006809 6.1e-48 194.9 222 51.8
Medtr5g077780 Medicago truncatula HOM05D005584 ORTHO05D006809 6.1e-48 194.9 220 52.7
vmacro01156 Vaccinium macrocarpon HOM05D005584 ORTHO05D006809 1.4e-47 193.7 221 50.7
Cfa009174 Carpinus fangiana HOM05D005584 ORTHO05D006809 2.3e-47 193.0 207 54.6
Prupe.4G221000 Prunus persica HOM05D005584 ORTHO05D006809 4.0e-47 192.2 223 49.8
CSS0030415 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 5.2e-47 191.8 213 53.1
FvH4_3g23340 Fragaria vesca HOM05D005584 ORTHO05D006809 6.7e-47 191.4 223 49.3
AUR62014068 Chenopodium quinoa HOM05D005584 ORTHO05D006809 8.8e-47 191.0 222 50.0
Hma1.2p1_0587F.1_g184080 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 2.6e-46 189.5 222 50.5
Sopen08g021760 Solanum pennellii HOM05D005584 ORTHO05D006809 3.3e-46 189.1 225 48.9
FAN11G0752 Fragaria x ananassa HOM05D005584 ORTHO05D006809 5.7e-46 188.3 207 50.2
Phvul.011G052800 Phaseolus vulgaris HOM05D005584 ORTHO05D006809 5.7e-46 188.3 223 51.1
PGSC0003DMG400033619 Solanum tuberosum HOM05D005584 ORTHO05D006809 5.7e-46 188.3 225 48.4
CANSAT56G2850 Cannabis sativa HOM05D005584 ORTHO05D006809 1.7e-45 186.8 226 47.8
CsaV3_2G024710 Cucumis sativus L. HOM05D005584 ORTHO05D006809 2.2e-45 186.4 226 49.1
FAN21G3548 Fragaria x ananassa HOM05D005584 ORTHO05D006809 2.8e-45 186.0 223 48.0
Peaxi162Scf00105g01417 Petunia axillaris HOM05D005584 ORTHO05D006809 2.8e-45 186.0 224 48.2
Actinidia08155 Actinidia chinensis HOM05D005584 ORTHO05D006809 3.7e-45 185.7 223 49.3
Haze_12208 Corylus avellana HOM05D005584 ORTHO05D006809 3.7e-45 185.7 210 51.4
FAN16G0047 Fragaria x ananassa HOM05D005584 ORTHO05D006809 3.7e-45 185.7 223 48.0
Lj1g0002439 Lotus japonicus HOM05D005584 ORTHO05D006809 1.1e-44 184.1 216 50.5
Psat2g045680 Pisum sativum HOM05D005584 ORTHO05D006809 1.4e-44 183.7 220 50.0
FAN25G2737 Fragaria x ananassa HOM05D005584 ORTHO05D006809 4.1e-44 182.2 223 47.5
CSS0021029 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 5.3e-44 181.8 212 50.9
Solyc08g067820.3 Solanum lycopersicum HOM05D005584 ORTHO05D006809 7.0e-44 181.4 225 47.1
Eucgr.K03598 Eucalyptus grandis HOM05D005584 ORTHO05D006809 9.1e-44 181.0 220 50.5
Lj3g0022996 Lotus japonicus HOM05D005584 ORTHO05D006809 2.7e-43 179.5 216 49.5
AL4G22490 Arabidopsis lyrata HOM05D005584 ORTHO05D006809 4.5e-43 178.7 200 52.0
Oeu056410.1 Olea europaea HOM05D005584 ORTHO05D006809 1.3e-42 177.2 214 48.1
VMungo1127G1231 Vigna mungo HOM05D005584 ORTHO05D006809 1.7e-42 176.8 207 51.2
Nn4g22723 Nelumbo nucifera HOM05D005584 ORTHO05D006809 2.2e-42 176.4 218 48.2
Sed0009924 Sechium edule HOM05D005584 ORTHO05D006809 2.2e-42 176.4 220 50.5
BraA07t29554Z Brassica rapa HOM05D005584 ORTHO05D006809 3.8e-42 175.6 215 47.4
Gorai.009G374800 Gossypium raimondii HOM05D005584 ORTHO05D006809 3.8e-42 175.6 213 48.8
Aqoxy3G01083 Aquilegia oxysepala HOM05D005584 ORTHO05D006809 5.0e-42 175.3 214 47.2
Carub.0004s0855 Capsella rubella HOM05D005584 ORTHO05D006809 5.0e-42 175.3 203 52.2
Nn2g14080 Nelumbo nucifera HOM05D005584 ORTHO05D006809 8.5e-42 174.5 216 48.6
BcaB02g10116 Brassica carinata HOM05D005584 ORTHO05D006809 1.5e-41 173.7 202 49.0
A07p18380 Brassica napus HOM05D005584 ORTHO05D006809 1.5e-41 173.7 216 47.7
ECA233G2638 Erigeron canadensis HOM05D005584 ORTHO05D006809 1.5e-41 173.7 204 50.0
Lsat_1_v5_gn_9_120260 Lactuca sativa HOM05D005584 ORTHO05D006809 1.5e-41 173.7 222 48.6
BcaC02g10906 Brassica carinata HOM05D005584 ORTHO05D006809 1.9e-41 173.3 192 50.5
Migut.E00177 Erythranthe guttata HOM05D005584 ORTHO05D006809 1.9e-41 173.3 223 45.3
CARHR120490 Cardamine hirsuta HOM05D005584 ORTHO05D006809 4.2e-41 172.2 200 51.0
C04p23810 Brassica napus HOM05D005584 ORTHO05D006809 5.5e-41 171.8 192 50.0
Aa31LG5G8210 Aethionema arabicum HOM05D005584 ORTHO05D006809 1.2e-40 170.6 233 45.5
HanXRQChr12g0371541 Helianthus annuus HOM05D005584 ORTHO05D006809 1.2e-40 170.6 200 51.0
Sp4g10620 Schrenkiella parvula HOM05D005584 ORTHO05D006809 1.2e-40 170.6 198 49.0
MBI10_g28000_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 1.6e-40 170.2 222 47.3
BolC4t23879H Brassica oleracea HOM05D005584 ORTHO05D006809 2.7e-40 169.5 192 49.5
PSO017G5970 Papaver somniferum HOM05D005584 ORTHO05D006809 3.6e-40 169.1 222 45.9
Thhalv10017205m.g Eutrema salsugineum HOM05D005584 ORTHO05D006809 6.1e-40 168.3 212 46.7
MSTRG.2403 Avicennia marina HOM05D005584 ORTHO05D006809 1.4e-39 167.2 204 47.1
Cc08_g15830 Coffea canephora HOM05D005584 ORTHO05D006809 2.3e-39 166.4 199 47.2
Hund25366 Selenicereus undatus HOM05D005584 ORTHO05D003410 4.0e-39 165.6 258 42.2
ClCG08G017930 Citrullus lanatus HOM05D005584 ORTHO05D006809 1.2e-38 164.1 205 48.3
Rhsim12G0043700 Rhododendron simsii HOM05D005584 ORTHO05D006809 1.5e-38 163.7 226 44.2
unitig_62.g23668 Utricularia gibba HOM05D005584 ORTHO05D006809 2.6e-38 162.9 205 46.3
SGA_v2.0_scaffold57G20112 Striga asiatica HOM05D005584 ORTHO05D006809 9.8e-38 161.0 222 45.5
Gorai.002G185600 Gossypium raimondii HOM05D005584 ORTHO05D006809 1.7e-37 160.2 197 49.7
Nitab4.5_0006579g0040 Nicotiana tabacum HOM05D005584 ORTHO05D006809 1.7e-37 160.2 191 50.3
PSO478G2901 Papaver somniferum HOM05D005584 ORTHO05D006809 1.7e-37 160.2 222 45.0
Nitab4.5_0000125g0200 Nicotiana tabacum HOM05D005584 ORTHO05D006809 3.7e-37 159.1 160 54.4
Glyma.12G050500 Glycine max HOM05D005584 ORTHO05D006809 9.1e-36 154.5 186 50.0
SalBow8G4058 Salvia bowleyana HOM05D005584 ORTHO05D006809 7.7e-35 151.4 221 44.3
HPP92_004538 Vanilla planifolia HOM05D005584 ORTHO05D006809 3.8e-34 149.1 217 45.2
AT5G27300 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 5.0e-34 148.7 181 48.6
CDE06G1284 Ceratophyllum demersum HOM05D005584 ORTHO05D006809 4.2e-33 145.6 188 44.7
Gorai.001G098200 Gossypium raimondii HOM05D005584 ORTHO05D006809 4.2e-33 145.6 210 43.8
SGA_v2.0_scaffold74G24685 Striga asiatica HOM05D005584 ORTHO05D006809 2.8e-32 142.9 221 43.4
ATR1091G072 Amborella trichopoda HOM05D005584 ORTHO05D006809 3.6e-32 142.5 216 42.6
MELO3C010671.2 Cucumis melo HOM05D005584 ORTHO05D006809 8.0e-32 141.4 198 46.0
Zm00001eb209860 Zea mays HOM05D005584 ORTHO05D006809 8.9e-31 137.9 235 39.6
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 1.7e-29 133.7 94 66.0
Lj6A807T86 Lonicera japonica HOM05D005584 ORTHO05D006809 1.7e-29 133.7 226 41.2
TPR.G25316 Trifolium pratense HOM05D005584 ORTHO05D006809 1.8e-28 130.2 123 56.9
EL10Ac6g13701 Beta vulgaris HOM05D005584 ORTHO05D006809 2.4e-28 129.8 222 40.1
AUR62005408 Chenopodium quinoa HOM05D005584 ORTHO05D006809 7.0e-28 128.3 222 40.5
Lsat_1_v5_gn_8_155560 Lactuca sativa HOM05D005584 ORTHO05D006809 1.7e-26 123.6 176 46.0
BcaB06g28170 Brassica carinata HOM05D005584 ORTHO05D006809 2.3e-26 123.2 120 55.0
SEGI_24248 Sequoiadendron giganteum HOM05D005584 ORTHO05D006809 3.8e-26 122.5 224 36.2
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 8.6e-26 121.3 208 41.3
Eucgr.D00612 Eucalyptus grandis HOM05D005584 ORTHO05D006809 5.6e-25 118.6 172 47.1
Dinv24830 Davidia involucrata HOM05D005584 ORTHO05D006809 2.8e-24 116.3 168 47.0
Mapoly0029s0094 Marchantia polymorpha HOM05D005584 ORTHO05D006809 7.5e-22 108.2 123 52.0
Pp3c16_13430 Physcomitrium patens HOM05D005584 ORTHO05D006809 9.8e-22 107.8 203 36.5
Hma1.2p1_0223F.1_g094390 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 1.1e-20 104.4 168 42.9
Ah.02g130030 Amaranthus hybridus HOM05D005584 ORTHO05D006809 2.4e-20 103.2 195 40.0
DCAR_026533 Daucus carota HOM05D005584 ORTHO05D006809 2.3e-18 96.7 171 39.8
AT2G27790 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 1.6e-16 90.5 144 43.8
Sc11g0001080 Simmondsia chinensis HOM05D005584 ORTHO05D006809 1.8e-15 87.0 161 39.1
COL.COLO4_24201 Corchorus olitorius HOM05D005584 ORTHO05D006809 6.8e-15 85.1 41 87.8
Ca_05838_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 1.3e-13 80.9 51 72.5
Hund18879 Selenicereus undatus HOM05D005584 ORTHO05D006809 8.3e-13 78.2 135 41.5
CAN.G21.11 Capsicum annuum HOM05D005584 ORTHO05D006809 5.4e-12 75.5 96 49.0
CAN.G414.8 Capsicum annuum HOM05D000928 ORTHO05D001186 9.2e-12 74.7 52 59.6
SMO361G0752 Selaginella moellendorffii HOM05D005584 ORTHO05D006809 2.0e-11 73.6 52 53.8
QL01p007518 Quercus lobata HOM05D005584 ORTHO05D006809 9.5e-09 64.7 146 36.3
Gohir.D07G091700 Gossypium hirsutum HOM05D005584 ORTHO05D006809 1.4e-07 60.8 98 39.8
Gorai.004G016800 Gossypium raimondii HOM05D005584 ORTHO05D006809 8.9e-07 58.2 45 62.2
Gohir.A07G086801 Gossypium hirsutum HOM05D005584 ORTHO05D006809 7.5e-06 55.1 90 40.0


User provided reference genes

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