Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G143400 Populus trichocarpa HOM05D001514 ORTHO05D005209 1.1e-124 449.9 222 100.0
Sabra06G0113700 Salix brachista HOM05D001514 ORTHO05D005209 3.8e-112 408.3 250 83.6
Manes.03G199800 Manihot esculenta HOM05D001514 ORTHO05D005209 1.5e-108 396.4 222 84.2
Haze_10270 Corylus avellana HOM05D001514 ORTHO05D005209 3.3e-108 395.2 223 83.9
Atru.chr7.1692 Acer truncatum HOM05D001514 ORTHO05D005209 1.4e-106 389.8 224 83.0
TAR626G0523 Trochodendron aralioides HOM05D001514 ORTHO05D005209 1.4e-106 389.8 213 85.4
TAR626G1304 Trochodendron aralioides HOM05D001514 ORTHO05D005209 1.4e-106 389.8 213 85.4
TWI60G0494 Tripterygium wilfordii HOM05D001514 ORTHO05D005209 3.1e-106 388.7 222 81.1
CiPaw.03G207800 Carya illinoinensis HOM05D001514 ORTHO05D005209 6.9e-106 387.5 223 83.0
Prupe.7G201200 Prunus persica HOM05D001514 ORTHO05D005209 6.9e-106 387.5 222 82.9
Thecc.09G079100 Theobroma cacao HOM05D001514 ORTHO05D005209 9.0e-106 387.1 223 83.0
TAR383G0900 Trochodendron aralioides HOM05D001514 ORTHO05D005209 3.4e-105 385.2 212 83.0
Ciclev10012695m.g Citrus clementina HOM05D001514 ORTHO05D005209 4.5e-105 384.8 223 83.0
CSS0005970 Camellia sinensis var. sinensis HOM05D001514 ORTHO05D005209 5.9e-105 384.4 223 80.7
MD15G1215700 Malus domestica HOM05D001514 ORTHO05D005209 2.2e-104 382.5 223 81.2
Nn8g38685 Nelumbo nucifera HOM05D001514 ORTHO05D005209 5.0e-104 381.3 213 83.1
Duzib168G1760 Durio zibethinus HOM05D001514 ORTHO05D005209 8.4e-104 380.6 225 82.2
COL.COLO4_18112 Corchorus olitorius HOM05D001514 ORTHO05D005209 1.9e-103 379.4 223 79.4
QL11p000460 Quercus lobata HOM05D001514 ORTHO05D005209 1.9e-103 379.4 222 80.6
Eucgr.C00825 Eucalyptus grandis HOM05D001514 ORTHO05D005209 1.2e-102 376.7 223 78.9
Dinv42376 Davidia involucrata HOM05D001514 ORTHO05D005209 1.6e-102 376.3 219 80.8
Hma1.2p1_0928F.1_g237710 Hydrangea macrophylla HOM05D001514 ORTHO05D005209 7.9e-102 374.0 217 81.1
Haze_25985 Corylus avellana HOM05D001514 ORTHO05D005209 1.3e-101 373.2 260 71.2
Haze_25993 Corylus avellana HOM05D001514 ORTHO05D005209 1.3e-101 373.2 260 71.2
Cpa.g.sc280.6 Carica papaya HOM05D001514 ORTHO05D005209 2.3e-101 372.5 223 80.7
MD15G1215800 Malus domestica HOM05D001514 ORTHO05D005209 2.3e-101 372.5 224 79.9
Cc06_g12020 Coffea canephora HOM05D001514 ORTHO05D005209 3.9e-101 371.7 223 78.5
GSVIVG01015097001 Vitis vinifera HOM05D001514 ORTHO05D005209 6.7e-101 370.9 224 79.9
CsaV3_2G001190 Cucumis sativus L. HOM05D001514 ORTHO05D005209 8.7e-101 370.5 224 81.2
MBI13_g11335_MAGBIO Magnolia biondii HOM05D001514 ORTHO05D005209 1.1e-100 370.2 213 80.8
Nitab4.5_0011363g0010 Nicotiana tabacum HOM05D001514 ORTHO05D005209 4.3e-100 368.2 222 78.4
Gohir.A13G191300 Gossypium hirsutum HOM05D001514 ORTHO05D005209 5.7e-100 367.9 223 77.6
EL10Ac8g19111 Beta vulgaris HOM05D001514 ORTHO05D005209 6.9e-98 360.9 223 74.9
Gorai.013G225400 Gossypium raimondii HOM05D001514 ORTHO05D005209 9.0e-98 360.5 223 76.7
ClCG11G001470 Citrullus lanatus HOM05D001514 ORTHO05D005209 2.0e-97 359.4 241 74.7
Gohir.D13G196700 Gossypium hirsutum HOM05D001514 ORTHO05D005209 2.0e-97 359.4 223 76.7
AUR62025186 Chenopodium quinoa HOM05D001514 ORTHO05D005209 4.5e-97 358.2 223 74.0
PGSC0003DMG400000323 Solanum tuberosum HOM05D001514 ORTHO05D005209 5.9e-97 357.8 224 76.8
Sed0009954 Sechium edule HOM05D001514 ORTHO05D005209 7.7e-97 357.5 223 78.5
Solyc12g009090.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.7e-96 356.3 224 76.3
FvH4_1g08420 Fragaria vesca HOM05D001514 ORTHO05D005209 2.9e-96 355.5 222 74.8
Sopen12g004040 Solanum pennellii HOM05D001514 ORTHO05D005209 3.8e-96 355.1 224 76.3
Aa31sc437G10 Aethionema arabicum HOM05D001514 ORTHO05D005209 6.5e-96 354.4 222 76.1
AL4G21890 Arabidopsis lyrata HOM05D001514 ORTHO05D005209 6.5e-96 354.4 222 75.7
Hund08725 Selenicereus undatus HOM05D001514 ORTHO05D005209 6.5e-96 354.4 214 74.8
Sp4g11040 Schrenkiella parvula HOM05D001514 ORTHO05D005209 4.6e-94 348.2 222 74.8
PGR142G1966 Punica granatum HOM05D001514 ORTHO05D005209 1.4e-93 346.7 223 74.9
ECA233G5402 Erigeron canadensis HOM05D001514 ORTHO05D005209 1.8e-93 346.3 223 73.1
Thhalv10002659m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 1.8e-93 346.3 222 74.3
Nitab4.5_0000073g0250 Nicotiana tabacum HOM05D001514 ORTHO05D005209 1.8e-93 346.3 225 74.7
THA.LOC104808891 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 1.8e-93 346.3 223 75.8
AT2G28230 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 2.3e-93 345.9 222 74.3
RcHm_v2.0_Chr2g0094521 Rosa chinensis HOM05D001514 ORTHO05D005209 2.3e-93 345.9 213 77.5
Lsat_1_v5_gn_7_35041 Lactuca sativa HOM05D001514 ORTHO05D005209 3.9e-93 345.1 222 73.0
MELO3C004649.2 Cucumis melo HOM05D001514 ORTHO05D005209 6.7e-93 344.4 223 77.6
SGA_v2.0_scaffold97G29140 Striga asiatica HOM05D001514 ORTHO05D005209 6.7e-93 344.4 223 72.6
BcaB02g10157 Brassica carinata HOM05D001514 ORTHO05D005209 2.0e-92 342.8 213 74.2
MSTRG.6002 Avicennia marina HOM05D001514 ORTHO05D005209 4.3e-92 341.7 223 71.7
HanXRQChr09g0237811 Helianthus annuus HOM05D001514 ORTHO05D005209 5.7e-92 341.3 223 74.0
SalBow6G1458 Salvia bowleyana HOM05D001514 ORTHO05D005209 9.7e-92 340.5 223 70.9
THA.LOC104826585 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 9.7e-92 340.5 242 71.1
Carub.0004s0911 Capsella rubella HOM05D001514 ORTHO05D005209 2.2e-91 339.3 222 72.1
BcaC02g10956 Brassica carinata HOM05D001514 ORTHO05D005209 8.2e-91 337.4 213 73.2
C04p23290 Brassica napus HOM05D001514 ORTHO05D005209 8.2e-91 337.4 213 73.2
ATR0598G338 Amborella trichopoda HOM05D001514 ORTHO05D005209 3.1e-90 335.5 213 71.8
Carub.0004s0910 Capsella rubella HOM05D001514 ORTHO05D005209 2.0e-89 332.8 222 69.8
PSO210G4222 Papaver somniferum HOM05D001514 ORTHO05D005209 2.0e-89 332.8 215 72.6
A07p18760 Brassica napus HOM05D001514 ORTHO05D005209 2.6e-89 332.4 213 71.8
PSO386G0176 Papaver somniferum HOM05D001514 ORTHO05D005209 2.6e-89 332.4 215 73.0
vmacro06328 Vaccinium macrocarpon HOM05D001514 ORTHO05D005209 3.4e-89 332.0 252 66.3
Ca_21314_v3 Cicer arietinum L. HOM05D001514 ORTHO05D005209 7.7e-89 330.9 222 69.4
Lj4g0013364 Lotus japonicus HOM05D001514 ORTHO05D005209 7.7e-89 330.9 213 70.9
Migut.J00937 Erythranthe guttata HOM05D001514 ORTHO05D005209 2.9e-88 328.9 213 70.9
Lj7A685T53 Lonicera japonica HOM05D001514 ORTHO05D005209 5.0e-88 328.2 265 61.5
SalBow3G1655 Salvia bowleyana HOM05D001514 ORTHO05D005209 6.5e-88 327.8 218 70.2
Nitab4.5_0001866g0080 Nicotiana tabacum HOM05D001514 ORTHO05D005209 8.5e-88 327.4 215 74.0
Sabra06G0112300 Salix brachista HOM05D001514 ORTHO05D005209 8.5e-88 327.4 169 97.0
BolC4t23831H Brassica oleracea HOM05D001514 ORTHO05D005209 1.4e-87 326.6 208 73.6
Lalb_Chr07g0181101 Lupinus albus HOM05D001514 ORTHO05D005209 1.2e-86 323.6 222 67.1
AUR62028988 Chenopodium quinoa HOM05D001514 ORTHO05D005209 2.1e-86 322.8 202 74.3
Glyma.17G050300 Glycine max HOM05D001514 ORTHO05D005209 4.7e-86 321.6 217 68.7
BraA07t29585Z Brassica rapa HOM05D001514 ORTHO05D005209 1.0e-85 320.5 208 71.6
Glyma.13G109300 Glycine max HOM05D001514 ORTHO05D005209 2.3e-85 319.3 217 68.2
Psat4g016720 Pisum sativum HOM05D001514 ORTHO05D005209 6.7e-85 317.8 220 66.8
Solyc05g041170.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 6.7e-85 317.8 213 65.7
CDE05G2440 Ceratophyllum demersum HOM05D001514 ORTHO05D005209 8.8e-85 317.4 214 69.2
Medtr4g125510 Medicago truncatula HOM05D001514 ORTHO05D005209 2.0e-84 316.2 217 66.8
AT4G09070 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 4.4e-84 315.1 222 64.9
Phvul.003G131900 Phaseolus vulgaris HOM05D001514 ORTHO05D005209 1.7e-83 313.2 217 65.4
TPR.G9427 Trifolium pratense HOM05D001514 ORTHO05D005209 3.7e-83 312.0 214 66.4
Aqoxy7G01056 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 4.8e-83 311.6 215 66.5
arahy.Tifrunner.gnm1.ann1.0DN5L0 Arachis hypogaea HOM05D001514 ORTHO05D005209 2.4e-82 309.3 217 64.1
arahy.Tifrunner.gnm1.ann1.0TW07M Arachis hypogaea HOM05D001514 ORTHO05D005209 2.4e-82 309.3 217 64.1
arahy.Tifrunner.gnm1.ann1.I7BKR8 Arachis hypogaea HOM05D001514 ORTHO05D005209 2.4e-82 309.3 217 64.1
HPP92_009229 Vanilla planifolia HOM05D001514 ORTHO05D005209 4.1e-82 308.5 212 68.4
Medtr2g063927 Medicago truncatula HOM05D001514 ORTHO05D005209 4.5e-81 305.1 218 63.3
Aqoxy7G01057 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 5.9e-81 304.7 215 66.0
VMungo1215G3125 Vigna mungo HOM05D001514 ORTHO05D005209 5.9e-81 304.7 202 68.3
Actinidia29922 Actinidia chinensis HOM05D001514 ORTHO05D005209 7.2e-79 297.7 180 76.1
Thhalv10017586m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 3.6e-78 295.4 222 64.4
Peaxi162Scf00928g00034 Petunia axillaris HOM05D001514 ORTHO05D005209 1.5e-76 290.0 218 66.1
Solyc10g049510.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.1e-74 282.0 213 59.6
Os09g0443500 Oryza sativa ssp. japonica HOM05D001514 ORTHO05D005209 7.0e-74 281.2 222 58.1
Solyc10g054950.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 7.0e-74 281.2 210 61.4
Zm00001eb314270 Zea mays HOM05D001514 ORTHO05D005209 5.0e-72 275.0 222 56.8
CANSAT11G2059 Cannabis sativa HOM05D001514 ORTHO05D005209 1.9e-71 273.1 170 76.5
CARHR121150 Cardamine hirsuta HOM05D001514 ORTHO05D005209 5.5e-71 271.6 222 59.5
Sc08g0008840 Simmondsia chinensis HOM05D001514 ORTHO05D005209 6.1e-70 268.1 167 78.4
Sc08g0009330 Simmondsia chinensis HOM05D001514 ORTHO05D005209 6.1e-70 268.1 167 78.4
Carub.0006s2765 Capsella rubella HOM05D001514 ORTHO05D005209 1.8e-69 266.5 222 53.2
Rhsim03G0229200 Rhododendron simsii HOM05D001514 ORTHO05D005209 2.6e-68 262.7 173 74.0
FAN26G1993 Fragaria x ananassa HOM05D001514 ORTHO05D005209 1.7e-67 260.0 173 72.3
Actinidia38471 Actinidia chinensis HOM05D001514 ORTHO05D005209 2.2e-67 259.6 223 60.1
FAN26G0729 Fragaria x ananassa HOM05D001514 ORTHO05D005209 6.5e-64 248.1 193 64.8
PGSC0003DMG400027872 Solanum tuberosum HOM05D001514 ORTHO05D005209 8.5e-64 247.7 189 61.4
Solyc10g055100.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.1e-63 247.3 210 55.7
Mapoly0097s0017 Marchantia polymorpha HOM05D001514 ORTHO05D005209 1.9e-63 246.5 216 49.1
Solyc10g055160.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.9e-63 246.5 185 60.5
SMO141G0192 Selaginella moellendorffii HOM05D001514 ORTHO05D005209 1.2e-62 243.8 207 52.7
Nitab4.5_0000073g0220 Nicotiana tabacum HOM05D001514 ORTHO05D005209 2.7e-62 242.7 136 83.1
DCAR_024739 Daucus carota HOM05D001514 ORTHO05D005209 8.0e-62 241.1 141 78.0
Solyc10g055020.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.7e-59 233.4 219 52.5
Solyc10g054980.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.8e-58 229.9 213 52.6
Psat0s2317g0240 Pisum sativum HOM05D001514 ORTHO05D005209 3.1e-58 229.2 211 51.7
DCAR_026438 Daucus carota HOM05D001514 ORTHO05D005209 7.0e-58 228.0 142 74.6
PGSC0003DMG400024425 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.6e-57 226.9 169 60.4
CAN.G1963.7 Capsicum annuum HOM05D001514 ORTHO05D005209 1.7e-56 223.4 164 65.2
CAN.G2532.1 Capsicum annuum HOM05D001514 ORTHO05D005209 2.3e-56 223.0 159 64.8
Psat0s4474g0080 Pisum sativum HOM05D001514 ORTHO05D005209 1.6e-54 216.9 211 48.3
Pp3c7_2780 Physcomitrium patens HOM05D001514 ORTHO05D005209 8.0e-54 214.5 214 43.9
unitig_749.g14240 Utricularia gibba HOM05D001514 ORTHO05D005209 1.0e-53 214.2 150 68.0
AagrBONN_evm.TU.Sc2ySwM_344.5098 Anthoceros agrestis HOM05D001514 ORTHO05D005209 2.9e-51 206.1 187 49.2
Sopen10g024920 Solanum pennellii HOM05D001514 ORTHO05D005209 3.2e-50 202.6 169 56.2
CAN.G299.3 Capsicum annuum HOM05D001514 ORTHO05D005209 2.7e-49 199.5 127 76.4
Solyc10g055010.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.9e-49 198.4 143 62.9
PGSC0003DMG400040125 Solanum tuberosum HOM05D001514 ORTHO05D005209 8.6e-48 194.5 203 48.3
CBR_g11153 Chara braunii HOM05D001514 ORTHO05D005209 9.5e-47 191.0 216 39.8
CAN.G1774.14 Capsicum annuum HOM05D001514 ORTHO05D005209 4.7e-46 188.7 137 63.5
Solyc10g055070.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.4e-45 187.2 161 54.7
Manes.15G009400 Manihot esculenta HOM05D001514 ORTHO05D005209 6.8e-45 184.9 128 71.9
PGSC0003DMG400003348 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.3e-40 170.6 131 62.6
MD02G1088400 Malus domestica HOM05D001514 ORTHO05D005209 3.0e-40 169.5 172 53.5
Sopen10g024960 Solanum pennellii HOM05D001514 ORTHO05D005209 1.1e-37 161.0 121 61.2
Solyc10g055150.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.0e-37 159.1 131 57.3
Solyc10g049550.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.5e-36 157.1 131 53.4
Solyc10g055130.2 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.9e-34 150.2 117 59.0
Potri.005G126902 Populus trichocarpa HOM05D001514 ORTHO05D005209 8.1e-30 134.8 82 86.6
Sopen10g024890 Solanum pennellii HOM05D001514 ORTHO05D005209 3.1e-29 132.9 99 59.6
Sopen10g024880 Solanum pennellii HOM05D000004 ORTHO05D000002 1.9e-23 113.6 91 60.4
Solyc10g055040.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 8.1e-22 108.2 143 41.3
DCAR_024738 Daucus carota HOM05D001514 ORTHO05D005209 1.1e-21 107.8 80 65.0
Rhsim03G0228900 Rhododendron simsii HOM05D001514 ORTHO05D005209 1.3e-19 100.9 58 72.4
CAN.G1963.4 Capsicum annuum HOM05D001514 ORTHO05D005209 3.8e-19 99.4 66 63.6
Sopen12g011120 Solanum pennellii HOM05D001514 ORTHO05D005209 6.4e-19 98.6 81 56.8
Oeu055661.2 Olea europaea HOM05D001514 ORTHO05D005209 1.1e-15 87.8 52 67.3
AT2G28020 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 1.2e-12 77.8 61 60.7
Solyc12g062270.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.4e-12 76.3 106 37.7
ECA233G2563 Erigeron canadensis HOM05D000517 ORTHO05D000751 3.8e-11 72.8 102 40.2
BcaC07g40291 Brassica carinata HOM05D001514 ORTHO05D005209 4.9e-11 72.4 55 67.3
C08p34050 Brassica napus HOM05D001514 ORTHO05D005209 4.9e-11 72.4 55 67.3
BolC8t51003H Brassica oleracea HOM05D001514 ORTHO05D005209 8.4e-11 71.6 54 68.5


User provided reference genes

Program Settings