Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 0.0e+00 1353.6 704 100.0
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 0.0e+00 1327.4 704 97.6
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 0.0e+00 1202.2 690 89.7
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 0.0e+00 1201.0 707 87.3
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 0.0e+00 1199.9 707 87.6
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1198.7 695 88.5
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1198.0 694 87.9
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 0.0e+00 1197.2 694 88.6
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 0.0e+00 1194.5 694 88.2
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 0.0e+00 1192.9 698 88.0
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1191.4 698 88.0
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1191.0 690 88.4
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 0.0e+00 1188.7 703 87.9
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 0.0e+00 1187.9 699 87.4
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1187.2 696 87.5
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1185.6 694 87.5
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 0.0e+00 1184.1 695 87.8
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1181.0 694 87.0
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 0.0e+00 1179.1 707 86.7
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1178.7 699 87.4
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1177.9 694 86.9
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 0.0e+00 1177.2 704 86.2
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1176.0 704 86.1
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 0.0e+00 1176.0 689 87.4
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1175.6 704 86.1
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1174.8 694 86.7
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 0.0e+00 1174.5 694 87.2
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 0.0e+00 1172.9 706 86.5
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 0.0e+00 1171.0 697 85.8
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 0.0e+00 1171.0 723 83.8
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 0.0e+00 1169.8 706 85.8
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1168.3 689 86.8
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1168.3 689 86.8
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1168.3 689 86.8
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 0.0e+00 1165.2 690 86.7
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 0.0e+00 1165.2 678 88.1
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1164.8 694 86.2
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 0.0e+00 1164.4 694 86.0
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 0.0e+00 1164.1 699 85.4
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1162.5 704 84.4
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 0.0e+00 1157.1 693 84.7
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1155.6 699 85.8
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 0.0e+00 1152.9 700 85.7
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 0.0e+00 1148.3 730 82.6
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1147.5 699 84.4
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1147.5 690 85.2
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 0.0e+00 1146.0 735 81.5
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1145.6 690 85.1
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1145.2 694 85.6
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 0.0e+00 1144.0 696 83.9
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 0.0e+00 1143.3 696 83.8
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 0.0e+00 1143.3 689 85.8
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 0.0e+00 1142.9 696 83.6
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1142.5 696 83.6
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1142.5 696 83.6
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 0.0e+00 1142.5 696 83.8
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 0.0e+00 1141.7 690 84.9
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 0.0e+00 1141.7 691 84.1
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 0.0e+00 1141.3 694 85.7
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 0.0e+00 1140.9 691 84.1
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1139.0 713 84.0
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 0.0e+00 1139.0 700 84.0
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 0.0e+00 1138.6 694 83.0
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 0.0e+00 1137.9 696 83.3
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1137.5 687 84.1
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1137.1 687 83.8
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 0.0e+00 1136.7 699 84.0
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 0.0e+00 1135.9 697 83.5
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 0.0e+00 1135.6 720 81.4
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 0.0e+00 1134.0 707 82.5
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 0.0e+00 1133.2 691 83.8
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 0.0e+00 1132.5 694 83.3
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1132.5 706 83.6
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1129.8 696 83.0
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 0.0e+00 1128.2 694 84.4
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1125.5 687 84.4
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 0.0e+00 1121.3 712 82.6
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 0.0e+00 1120.1 694 83.9
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 0.0e+00 1119.8 701 81.9
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 0.0e+00 1119.4 688 83.9
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 0.0e+00 1117.8 690 82.5
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 0.0e+00 1116.7 693 82.5
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 0.0e+00 1115.1 669 84.5
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 0.0e+00 1112.8 698 81.9
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 0.0e+00 1112.8 712 82.7
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 0.0e+00 1108.6 693 80.7
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1107.8 696 81.5
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 0.0e+00 1103.2 740 77.6
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 0.0e+00 1100.9 765 76.5
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1092.8 716 80.0
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 0.0e+00 1087.4 688 79.9
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 0.0e+00 1078.9 729 77.4
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 1.1e-309 1066.2 667 81.4
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 4.0e-309 1064.3 667 82.5
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 2.0e-308 1062.0 740 76.1
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 7.9e-305 1050.0 691 77.4
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 1.0e-304 1049.7 694 76.9
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 8.1e-302 1040.0 716 76.1
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 1.3e-296 1022.7 745 71.3
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 2.8e-286 988.4 614 81.6
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 2.2e-283 978.8 632 81.8
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 3.2e-282 974.9 592 84.1
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 7.7e-276 953.7 707 68.0
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 7.7e-276 953.7 707 68.0
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.0e-272 943.3 585 81.2
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 1.7e-270 936.0 683 67.9
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 3.2e-266 921.8 695 67.5
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 1.4e-264 916.4 692 67.6
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 1.1e-263 913.3 684 72.5
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 1.0e-259 900.2 567 79.9
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 3.2e-258 895.2 554 83.0
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 4.7e-257 891.3 590 78.5
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 7.0e-253 877.5 505 88.9
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 3.8e-251 871.7 676 70.0
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 5.0e-235 818.1 486 86.4
Os10g0488300 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 4.4e-223 778.5 680 58.4
Zm00001eb045280 Zea mays HOM05D004330 ORTHO05D005182 1.7e-214 750.0 680 56.5
CDE03G0141 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 4.7e-201 705.3 442 79.9
COL.COLO4_33595 Corchorus olitorius HOM05D004330 ORTHO05D005182 3.8e-198 695.7 452 82.3
SEGI_21093 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 9.7e-154 548.1 329 80.9
MCO11G104 Micromonas commoda HOM05D004330 ORTHO05D005182 1.3e-153 547.7 729 43.9
Cre08.g367200 Chlamydomonas reinhardtii HOM05D004330 ORTHO05D005182 5.3e-144 515.8 755 39.1
Migut.C00321 Erythranthe guttata HOM05D004330 ORTHO05D005182 3.2e-133 479.9 280 86.1
CSS0031487 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 9.1e-128 461.8 273 85.0
Haze_02247 Corylus avellana HOM05D004330 ORTHO05D005182 2.1e-124 450.7 269 85.5
CBR_g54934 Chara braunii HOM05D004330 ORTHO05D005182 3.9e-118 429.9 357 61.6
PRCOL_00005416 Prasinoderma coloniale HOM05D004330 ORTHO05D005182 4.7e-116 422.9 748 36.1
COL.COLO4_00397 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.9e-112 411.0 237 88.2
MBI16_g41537_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 2.4e-112 410.6 233 85.8
SGA_v2.0_scaffold227G43197 Striga asiatica HOM05D004330 ORTHO05D005182 1.2e-108 398.3 253 79.4
HPP92_006235 Vanilla planifolia HOM05D004330 ORTHO05D005182 3.6e-108 396.7 261 80.5
CDE03G0281 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 1.8e-99 367.9 245 80.0
HPP92_006237 Vanilla planifolia HOM05D004330 ORTHO05D005182 3.2e-80 303.9 181 80.1
SalBow1G7663 Salvia bowleyana HOM05D001091 ORTHO05D001020 4.3e-77 293.5 215 69.3
FvH4_6g22200 Fragaria vesca HOM05D004330 ORTHO05D005182 1.4e-75 288.5 193 81.9
MBI13_g40628_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 9.9e-74 282.3 148 89.9
Rhsim02G0174800 Rhododendron simsii HOM05D004330 ORTHO05D005182 8.7e-70 269.2 195 72.3
FAN14G0768 Fragaria x ananassa HOM05D004330 ORTHO05D005182 1.3e-60 238.8 192 71.4
CBR_g54936 Chara braunii HOM05D000019 ORTHO05D000353 3.7e-60 237.3 155 65.8
Actinidia09912 Actinidia chinensis HOM05D004330 ORTHO05D005182 4.6e-55 220.3 165 72.1
Oeu028617.1 Olea europaea HOM05D004330 ORTHO05D005182 1.3e-54 218.8 156 71.2
QL04p036179 Quercus lobata HOM05D004330 ORTHO05D037441 1.6e-52 211.8 180 66.7
QL09p008022 Quercus lobata HOM05D004330 ORTHO05D005182 1.4e-51 208.8 214 56.5
Cfa027264 Carpinus fangiana HOM05D004330 ORTHO05D005182 9.0e-51 206.1 489 28.6
Nitab4.5_0006062g0030 Nicotiana tabacum HOM05D004330 ORTHO05D005182 2.9e-49 201.1 121 85.1
Hund19535 Selenicereus undatus HOM05D004330 ORTHO05D005182 3.2e-48 197.6 113 88.5
HanXRQChr10g0312231 Helianthus annuus HOM05D004330 ORTHO05D005182 1.3e-41 175.6 104 85.6
Rhsim02G0174700 Rhododendron simsii HOM05D004330 ORTHO05D005182 5.5e-40 170.2 111 81.1
SEGI_19884 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 2.4e-35 154.8 111 71.2
C06p46260 Brassica napus HOM05D004330 ORTHO05D005182 4.7e-31 140.6 100 70.0
C06p46170 Brassica napus HOM05D004330 ORTHO05D005182 2.6e-29 134.8 100 68.0
C06p46210 Brassica napus HOM05D004330 ORTHO05D005182 2.6e-29 134.8 100 68.0
CARHR152420 Cardamine hirsuta HOM05D004330 ORTHO05D005182 1.4e-27 129.0 143 52.4
MBI13_g40627_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 3.8e-25 120.9 81 74.1
Haze_14000 Corylus avellana HOM05D004330 ORTHO05D005182 1.1e-24 119.4 80 76.2
COL.COLO4_23503 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.4e-22 112.5 76 77.6
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 5.2e-22 110.5 63 82.5
EL10Ac2g03252 Beta vulgaris HOM05D004330 ORTHO05D005182 2.6e-21 108.2 69 73.9
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 9.8e-21 106.3 82 65.9
HPP92_006236 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.7e-20 105.5 57 86.0
CARHR064590 Cardamine hirsuta HOM05D004330 ORTHO05D005182 2.8e-20 104.8 105 58.1
Zm00001eb378040 Zea mays HOM05D004330 ORTHO05D000629 1.1e-19 102.8 59 83.1
HPP92_006372 Vanilla planifolia HOM05D004330 ORTHO05D005182 5.0e-17 94.0 93 54.8
EL10Ac2g03375 Beta vulgaris HOM05D015602 ORTHO05D006373 1.1e-16 92.8 65 72.3
SGA_v2.0_scaffold123G33447 Striga asiatica HOM05D004330 ORTHO05D005182 4.9e-12 77.4 78 51.3
GSVIVG01018671001 Vitis vinifera HOM05D004330 ORTHO05D005182 1.2e-10 72.8 60 65.0
COL.COLO4_37492 Corchorus olitorius HOM05D004330 ORTHO05D005182 3.8e-09 67.8 42 81.0
QL05p049490 Quercus lobata HOM05D000205 ORTHO05D037441 8.6e-09 66.6 40 80.0
Haze_02240 Corylus avellana HOM05D000586 ORTHO05D001010 1.9e-08 65.5 46 71.7


User provided reference genes

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