Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G204400 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1696.4 845 100.0
Sabra05G0155000 Salix brachista HOM05D004503 ORTHO05D005460 0.0e+00 1639.8 893 92.3
Potri.002G057800 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1581.6 845 92.4
Manes.02G088300 Manihot esculenta HOM05D004503 ORTHO05D005460 0.0e+00 1467.6 849 86.1
Thecc.01G170000 Theobroma cacao HOM05D004503 ORTHO05D005460 0.0e+00 1465.3 847 84.9
Gorai.001G211500 Gossypium raimondii HOM05D004503 ORTHO05D005460 0.0e+00 1463.7 845 84.5
Gohir.A07G183000 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1459.1 847 84.5
TWI14G0297 Tripterygium wilfordii HOM05D004503 ORTHO05D005460 0.0e+00 1451.4 848 83.1
COL.COLO4_08894 Corchorus olitorius HOM05D004503 ORTHO05D005460 0.0e+00 1445.6 864 82.3
Atru.chr6.2055 Acer truncatum HOM05D004503 ORTHO05D005460 0.0e+00 1425.6 846 82.7
Duzib138G1342 Durio zibethinus HOM05D004503 ORTHO05D005460 0.0e+00 1423.7 847 82.8
Ciclev10030701m.g Citrus clementina HOM05D004503 ORTHO05D005460 0.0e+00 1421.8 846 82.5
TAR629G1355 Trochodendron aralioides HOM05D004503 ORTHO05D005460 0.0e+00 1421.0 846 82.4
PGR042G1526 Punica granatum HOM05D004503 ORTHO05D005460 0.0e+00 1419.4 851 82.8
GSVIVG01020844001 Vitis vinifera HOM05D004503 ORTHO05D005460 0.0e+00 1418.7 842 82.4
MELO3C026971.2 Cucumis melo HOM05D004503 ORTHO05D005460 0.0e+00 1413.3 847 81.2
THA.LOC104826541 Tarenaya hassleriana HOM05D004503 ORTHO05D005460 0.0e+00 1412.9 864 80.8
Dinv07955 Davidia involucrata HOM05D004503 ORTHO05D005460 0.0e+00 1407.5 846 81.6
arahy.Tifrunner.gnm1.ann1.S01VYL Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1405.2 848 81.0
CsaV3_4G031940 Cucumis sativus L. HOM05D004503 ORTHO05D005460 0.0e+00 1404.4 847 80.9
Cpa.g.sc648.4 Carica papaya HOM05D004503 ORTHO05D005460 0.0e+00 1401.7 850 81.5
Lj1C677T5 Lonicera japonica HOM05D004503 ORTHO05D005460 0.0e+00 1401.0 847 81.3
arahy.Tifrunner.gnm1.ann1.96CX7H Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1400.6 848 80.7
CANSAT64G0633 Cannabis sativa HOM05D004503 ORTHO05D005460 0.0e+00 1399.0 847 81.3
CiPaw.13G152400 Carya illinoinensis HOM05D004503 ORTHO05D005460 0.0e+00 1398.6 850 81.4
Ca_14599_v3 Cicer arietinum L. HOM05D004503 ORTHO05D005460 0.0e+00 1395.2 853 79.8
Glyma.18G109800 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1395.2 844 80.3
Lalb_Chr07g0191281 Lupinus albus HOM05D004503 ORTHO05D005460 0.0e+00 1395.2 844 80.5
Medtr3g046640 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1395.2 853 79.7
VMungo0647G0468 Vigna mungo HOM05D004503 ORTHO05D005460 0.0e+00 1395.2 844 80.8
Phvul.006G022400 Phaseolus vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1394.4 844 80.6
Medtr0071s0030 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1392.5 853 79.6
Glyma.08G307900 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1391.3 844 80.0
ClCG11G016490 Citrullus lanatus HOM05D004503 ORTHO05D005460 0.0e+00 1388.6 847 80.2
Prupe.3G176600 Prunus persica HOM05D004503 ORTHO05D005460 0.0e+00 1388.6 847 79.8
Lj6g0014906 Lotus japonicus HOM05D004503 ORTHO05D005460 0.0e+00 1387.1 851 79.7
Actinidia12541 Actinidia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1385.9 846 80.1
QL01p017640 Quercus lobata HOM05D004503 ORTHO05D005460 0.0e+00 1384.0 908 76.2
MD17G1136200 Malus domestica HOM05D004503 ORTHO05D005460 0.0e+00 1381.7 839 80.1
Sed0003027 Sechium edule HOM05D004503 ORTHO05D005460 0.0e+00 1380.2 847 79.5
Psat5g185680 Pisum sativum HOM05D004503 ORTHO05D005460 0.0e+00 1378.2 853 79.1
Nitab4.5_0002251g0070 Nicotiana tabacum HOM05D004503 ORTHO05D005460 0.0e+00 1370.5 850 79.9
Sopen07g029580 Solanum pennellii HOM05D004503 ORTHO05D005460 0.0e+00 1369.0 849 79.2
MSTRG.6739 Avicennia marina HOM05D004503 ORTHO05D005460 0.0e+00 1366.7 846 79.6
Solyc07g056220.3 Solanum lycopersicum HOM05D004503 ORTHO05D005460 0.0e+00 1366.7 849 79.0
Aa31LG5G23690 Aethionema arabicum HOM05D004503 ORTHO05D005460 0.0e+00 1363.6 863 77.8
Migut.M00558 Erythranthe guttata HOM05D004503 ORTHO05D005460 0.0e+00 1360.9 846 78.5
Sc09g0009430 Simmondsia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1357.4 850 78.2
HanXRQChr13g0387771 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1350.5 846 78.0
Lsat_1_v5_gn_8_31680 Lactuca sativa HOM05D004503 ORTHO05D005460 0.0e+00 1350.5 843 77.5
Peaxi162Scf00111g00222 Petunia axillaris HOM05D004503 ORTHO05D005460 0.0e+00 1350.1 912 73.7
CAN.G585.22 Capsicum annuum HOM05D004503 ORTHO05D005460 0.0e+00 1349.7 849 78.4
SGA_v2.0_scaffold70G23615 Striga asiatica HOM05D004503 ORTHO05D005460 0.0e+00 1347.8 869 76.9
RcHm_v2.0_Chr2g0152001 Rosa chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1347.0 863 76.4
vmacro08730 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 0.0e+00 1346.3 925 73.7
Thhalv10016232m.g Eutrema salsugineum HOM05D004503 ORTHO05D005460 0.0e+00 1338.6 865 77.6
EL10Ac1g01630 Beta vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1337.8 851 77.0
PSO675G5402 Papaver somniferum HOM05D004503 ORTHO05D005460 0.0e+00 1337.0 846 77.5
FAN05G2445 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1336.6 863 76.0
Sp4g20340 Schrenkiella parvula HOM05D004503 ORTHO05D005460 0.0e+00 1335.1 865 77.5
BcaC01g05572 Brassica carinata HOM05D004503 ORTHO05D005460 0.0e+00 1333.2 865 77.1
C03p24750 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1333.2 865 77.1
BolC3t14864H Brassica oleracea HOM05D004503 ORTHO05D005460 0.0e+00 1333.2 865 77.1
FvH4_6g38590 Fragaria vesca HOM05D004503 ORTHO05D005460 0.0e+00 1330.9 863 75.8
A03p21010 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1330.1 865 76.9
BraA03t11340Z Brassica rapa HOM05D004503 ORTHO05D005460 0.0e+00 1330.1 865 76.9
Nn4g24335 Nelumbo nucifera HOM05D004503 ORTHO05D005460 0.0e+00 1330.1 847 77.1
FAN14G5858 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1329.3 863 75.7
AL4G35000 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 0.0e+00 1327.8 865 76.8
CARHR132590 Cardamine hirsuta HOM05D004503 ORTHO05D005460 0.0e+00 1326.2 865 76.2
Aqoxy1G01732 Aquilegia oxysepala HOM05D004503 ORTHO05D005460 0.0e+00 1325.8 847 77.2
Cc05_g09730 Coffea canephora HOM05D004503 ORTHO05D005460 0.0e+00 1324.3 846 76.1
AT2G38020 Arabidopsis thaliana HOM05D004503 ORTHO05D005460 0.0e+00 1320.4 865 76.2
Carub.0004s1999 Capsella rubella HOM05D004503 ORTHO05D005460 0.0e+00 1319.3 865 76.2
AUR62026613 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1318.9 850 76.4
CSS0024997 Camellia sinensis var. sinensis HOM05D004503 ORTHO05D005460 0.0e+00 1313.1 862 76.3
ECA233G4498 Erigeron canadensis HOM05D004503 ORTHO05D005460 0.0e+00 1312.7 849 76.2
Gohir.D07G189800 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1308.9 764 84.2
FAN02G3131 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1305.4 922 70.9
AUR62034921 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1303.5 850 75.5
FAN09G1308 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1302.0 922 70.7
Rhsim12G0009900 Rhododendron simsii HOM05D004503 ORTHO05D005460 0.0e+00 1295.4 876 74.5
HPP92_024264 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1293.9 845 74.7
Hund26670 Selenicereus undatus HOM05D004503 ORTHO05D005460 0.0e+00 1290.0 951 68.9
HanXRQChr13g0403751 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1267.7 789 77.6
ATR0772G123 Amborella trichopoda HOM05D004503 ORTHO05D005460 0.0e+00 1255.7 859 71.1
SEGI_01586 Sequoiadendron giganteum HOM05D004503 ORTHO05D005460 0.0e+00 1236.1 841 70.7
HPP92_024256 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1232.6 844 72.0
Eucgr.A02017 Eucalyptus grandis HOM05D004503 ORTHO05D005460 0.0e+00 1224.9 730 81.5
DCAR_013322 Daucus carota HOM05D004503 ORTHO05D005460 0.0e+00 1140.9 842 69.5
Ah.05g168350 Amaranthus hybridus HOM05D004503 ORTHO05D005460 0.0e+00 1132.1 849 68.0
Cfa009838 Carpinus fangiana HOM05D004503 ORTHO05D005460 0.0e+00 1113.6 850 68.4
Mapoly0052s0038 Marchantia polymorpha HOM05D004503 ORTHO05D005460 0.0e+00 1085.9 845 61.7
Haze_23205 Corylus avellana HOM05D004503 ORTHO05D005460 0.0e+00 1083.9 1140 54.2
Os01g0666800 Oryza sativa ssp. japonica HOM05D004503 ORTHO05D005460 1.2e-311 1073.2 882 63.0
Pp3c13_19740 Physcomitrium patens HOM05D004503 ORTHO05D005460 1.7e-311 1072.4 837 61.9
SMO358G0621 Selaginella moellendorffii HOM05D004503 ORTHO05D005460 1.7e-293 1012.7 841 57.9
MBI10_g21107_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 2.0e-283 979.2 861 63.3
BcaB01g03734 Brassica carinata HOM05D004503 ORTHO05D005460 1.5e-281 973.0 696 73.3
BcaNung06337 Brassica carinata HOM05D004503 ORTHO05D005460 4.3e-281 971.5 805 64.2
PSO063G7036 Papaver somniferum HOM05D004503 ORTHO05D005460 1.1e-276 956.8 626 74.4
SHI12362 Sapria himalayana HOM05D004503 ORTHO05D005460 1.1e-271 940.3 601 77.5
vmacro23147 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 3.6e-248 862.1 730 63.7
BcaC01g05574 Brassica carinata HOM05D004503 ORTHO05D005460 4.3e-225 785.4 685 62.8
Oeu020048.5 Olea europaea HOM05D004503 ORTHO05D005460 6.7e-210 734.9 469 80.4
CDE04G0954 Ceratophyllum demersum HOM05D004503 ORTHO05D005460 1.3e-205 720.7 433 82.4
Nitab4.5_0027860g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 6.7e-202 708.4 477 72.5
MBI10_g05864_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 2.3e-186 656.8 606 59.1
CBR_g46726 Chara braunii HOM05D004503 ORTHO05D005460 1.0e-178 631.3 857 41.7
PGSC0003DMG400017305 Solanum tuberosum HOM05D004503 ORTHO05D005460 1.5e-177 627.5 410 72.7
Nitab4.5_0010124g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 1.2e-174 617.8 369 84.8
TPR.G25270 Trifolium pratense HOM05D004503 ORTHO05D005460 6.8e-170 602.1 341 87.1
PRCOL_00002554 Prasinoderma coloniale HOM05D004503 ORTHO05D005460 1.2e-161 574.7 860 39.9
Oeu010987.1 Olea europaea HOM05D004503 ORTHO05D005460 9.2e-151 538.5 361 70.9
Cfa025981 Carpinus fangiana HOM05D004503 ORTHO05D005460 2.8e-139 500.4 829 36.4
TPR.G16790 Trifolium pratense HOM05D004503 ORTHO05D005460 3.2e-127 460.3 434 55.3
BcaB02g09224 Brassica carinata HOM05D004503 ORTHO05D005460 2.8e-123 447.2 596 46.6
Cre03.g199311 Chlamydomonas reinhardtii HOM05D004503 ORTHO05D005460 7.6e-121 439.1 1007 30.9
AL3G43330 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 4.5e-113 413.3 377 61.8
AagrBONN_evm.TU.Sc2ySwM_368.858 Anthoceros agrestis HOM05D004503 ORTHO05D005460 3.9e-109 400.2 331 55.6
AagrBONN_evm.TU.Sc2ySwM_368.859 Anthoceros agrestis HOM05D004503 ORTHO05D005460 5.5e-103 379.8 332 56.6
MBI10_g02225_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 2.2e-91 341.3 265 64.2
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 1.8e-90 338.2 218 78.9
BcaB01g03733 Brassica carinata HOM05D004503 ORTHO05D005460 1.3e-80 305.4 157 86.6
AagrBONN_evm.TU.Sc2ySwM_117.438 Anthoceros agrestis HOM05D004503 ORTHO05D005460 1.4e-77 295.4 320 49.1
PGR042G2164 Punica granatum HOM05D004503 ORTHO05D005460 3.4e-76 290.8 165 84.2
Actinidia25072 Actinidia chinensis HOM05D004503 ORTHO05D005460 5.7e-76 290.0 224 63.4
TPR.G20801 Trifolium pratense HOM05D004503 ORTHO05D005460 3.5e-41 174.5 97 81.4
Lsat_1_v5_gn_8_146460 Lactuca sativa HOM05D004503 ORTHO05D005460 4.7e-38 164.1 101 76.2
Lsat_1_v5_gn_2_4101 Lactuca sativa HOM05D004503 ORTHO05D005460 1.4e-34 152.5 108 67.6
Lsat_1_v5_gn_3_97321 Lactuca sativa HOM05D004503 ORTHO05D005460 1.7e-32 145.6 98 75.5
Lsat_1_v5_gn_9_81860 Lactuca sativa HOM05D004503 ORTHO05D005460 1.1e-31 142.9 94 75.5
Lsat_1_v5_gn_1_120320 Lactuca sativa HOM05D004503 ORTHO05D005460 7.3e-31 140.2 120 62.5
FvH4_6g38010 Fragaria vesca HOM05D004503 ORTHO05D005460 2.8e-30 138.3 168 48.8
Lsat_1_v5_gn_9_102961 Lactuca sativa HOM05D004503 ORTHO05D005460 8.9e-29 133.3 91 72.5
Lsat_1_v5_gn_5_109060 Lactuca sativa HOM05D004503 ORTHO05D005460 1.2e-28 132.9 106 68.9
Lsat_1_v5_gn_9_107141 Lactuca sativa HOM05D004503 ORTHO05D005460 2.0e-28 132.1 85 72.9
MBI10_g02227_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 2.4e-26 125.2 125 60.8
TPR.G6024 Trifolium pratense HOM05D004503 ORTHO05D005460 2.4e-26 125.2 67 83.6
Lsat_1_v5_gn_4_94880 Lactuca sativa HOM05D001336 ORTHO05D001211 7.1e-26 123.6 98 62.2
Lsat_1_v5_gn_6_107780 Lactuca sativa HOM05D004503 ORTHO05D003526 9.3e-26 123.2 95 69.5
Lsat_1_v5_gn_2_120 Lactuca sativa HOM05D003203 ORTHO05D003526 4.6e-25 120.9 113 58.4
Nitab4.5_0010753g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 6.0e-25 120.6 185 44.3
Lsat_1_v5_gn_0_13460 Lactuca sativa HOM05D003536 ORTHO05D004233 5.1e-24 117.5 100 64.0
Lsat_1_v5_gn_1_93381 Lactuca sativa HOM05D003203 ORTHO05D003526 1.1e-23 116.3 103 63.1
Lsat_1_v5_gn_4_100901 Lactuca sativa HOM05D004503 ORTHO05D005460 1.6e-22 112.5 68 75.0
Lsat_1_v5_gn_8_98160 Lactuca sativa HOM05D004503 ORTHO05D005460 2.4e-21 108.6 96 61.5
Lsat_1_v5_gn_2_36800 Lactuca sativa HOM05D004503 ORTHO05D005460 6.9e-21 107.1 61 77.0
Lsat_1_v5_gn_2_105761 Lactuca sativa HOM05D001000 ORTHO05D001896 1.5e-20 105.9 75 64.0
Nitab4.5_0010753g0030 Nicotiana tabacum HOM05D004503 ORTHO05D005460 4.4e-20 104.4 121 47.1
Lsat_1_v5_gn_8_13240 Lactuca sativa HOM05D004503 ORTHO05D005460 6.0e-17 94.0 81 64.2
Lsat_1_v5_gn_8_75300 Lactuca sativa HOM05D004503 ORTHO05D005460 7.9e-17 93.6 115 47.0
TPR.G24652 Trifolium pratense HOM05D004503 ORTHO05D005460 3.9e-16 91.3 54 87.0
C04p09630 Brassica napus HOM05D004503 ORTHO05D005460 4.3e-15 87.8 87 55.2
BolC4t22570H Brassica oleracea HOM05D004503 ORTHO05D005460 4.3e-15 87.8 87 55.2
Lsat_1_v5_gn_8_84700 Lactuca sativa HOM05D004503 ORTHO05D005460 5.3e-13 80.9 52 69.2
SalBow8G3309 Salvia bowleyana HOM05D004503 ORTHO05D005460 6.9e-13 80.5 49 83.7
Lsat_1_v5_gn_2_51260 Lactuca sativa HOM05D001336 ORTHO05D001211 9.0e-13 80.1 52 69.2
Lsat_1_v5_gn_8_136521 Lactuca sativa HOM05D004503 ORTHO05D000404 4.2e-10 71.2 79 50.6
Lsat_1_v5_gn_4_85140 Lactuca sativa HOM05D003203 ORTHO05D003526 2.1e-09 68.9 37 89.2
Rhsim08G0005700 Rhododendron simsii HOM05D004503 ORTHO05D037450 5.1e-08 64.3 85 49.4
Lsat_1_v5_gn_5_118461 Lactuca sativa HOM05D001336 ORTHO05D001211 1.1e-07 63.2 89 44.9
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 1.1e-07 63.2 194 25.8
MBI10_g02226_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 3.7e-06 58.2 36 75.0


User provided reference genes

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