Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G015700 Populus trichocarpa HOM05D005536 ORTHO05D006999 1.7e-296 1021.9 532 100.0
Sabra03G0008600 Salix brachista HOM05D005536 ORTHO05D006999 6.4e-275 950.3 550 90.7
Manes.10G122900 Manihot esculenta HOM05D005536 ORTHO05D006999 2.3e-232 808.9 520 80.6
CiPaw.05G049900 Carya illinoinensis HOM05D005536 ORTHO05D006999 1.6e-225 786.2 525 77.5
GSVIVG01023338001 Vitis vinifera HOM05D005536 ORTHO05D006999 3.9e-224 781.6 492 80.9
Dinv19387 Davidia involucrata HOM05D005536 ORTHO05D006999 2.0e-223 779.2 492 81.3
Prupe.1G573200 Prunus persica HOM05D005536 ORTHO05D006999 4.8e-222 774.6 494 79.1
Thecc.02G089300 Theobroma cacao HOM05D005536 ORTHO05D006999 1.8e-221 772.7 507 78.9
QL02p099453 Quercus lobata HOM05D005536 ORTHO05D006999 7.0e-221 770.8 492 80.7
Cfa005500 Carpinus fangiana HOM05D005536 ORTHO05D006999 3.5e-220 768.5 503 77.3
Haze_01749 Corylus avellana HOM05D005536 ORTHO05D006999 3.5e-220 768.5 501 78.8
Hma1.2p1_1108F.1_g257740 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 5.9e-220 767.7 493 78.9
Gohir.A13G035900 Gossypium hirsutum HOM05D005536 ORTHO05D006999 1.7e-219 766.1 511 77.7
Ciclev10000782m.g Citrus clementina HOM05D005536 ORTHO05D006999 8.5e-219 763.8 509 77.8
Duzib132G1177 Durio zibethinus HOM05D005536 ORTHO05D006999 4.2e-218 761.5 513 76.0
TAR376G0002 Trochodendron aralioides HOM05D005536 ORTHO05D006999 5.5e-218 761.1 492 78.3
RcHm_v2.0_Chr7g0221201 Rosa chinensis HOM05D005536 ORTHO05D006999 2.1e-217 759.2 491 79.4
Gorai.013G038700 Gossypium raimondii HOM05D005536 ORTHO05D006999 3.6e-217 758.4 511 77.1
Gohir.D13G034200 Gossypium hirsutum HOM05D005536 ORTHO05D006999 7.4e-215 750.7 511 76.5
FAN08G1062 Fragaria x ananassa HOM05D005536 ORTHO05D006999 1.7e-214 749.6 491 78.6
CANSAT11G0651 Cannabis sativa HOM05D005536 ORTHO05D006999 2.8e-214 748.8 500 76.6
Lj5A254G85 Lonicera japonica HOM05D005536 ORTHO05D006999 2.8e-214 748.8 516 75.6
FAN04G2224 Fragaria x ananassa HOM05D005536 ORTHO05D006999 8.2e-214 747.3 510 76.3
MBI06_g20964_MAGBIO Magnolia biondii HOM05D005536 ORTHO05D006999 4.1e-213 745.0 493 77.3
Rhsim11G0127400 Rhododendron simsii HOM05D005536 ORTHO05D006999 1.2e-212 743.4 516 74.8
TPR.G2082 Trifolium pratense HOM05D005536 ORTHO05D006999 1.6e-212 743.0 491 76.0
vmacro01743 Vaccinium macrocarpon HOM05D005536 ORTHO05D006999 1.6e-212 743.0 499 76.8
FvH4_5g28860 Fragaria vesca HOM05D005536 ORTHO05D006999 2.6e-212 742.3 510 75.7
ClCG11G000890 Citrullus lanatus HOM05D005536 ORTHO05D006999 2.2e-211 739.2 512 73.4
Psat1g222160 Pisum sativum HOM05D005536 ORTHO05D006999 5.0e-211 738.0 491 75.4
FAN13G0194 Fragaria x ananassa HOM05D005536 ORTHO05D006999 8.5e-211 737.3 540 72.4
TWI59G0084 Tripterygium wilfordii HOM05D005536 ORTHO05D006999 1.1e-210 736.9 487 77.8
Atru.BG.35.p Acer truncatum HOM05D005536 ORTHO05D006999 2.5e-210 735.7 482 79.3
Medtr2g006350 Medicago truncatula HOM05D005536 ORTHO05D006999 2.5e-210 735.7 491 75.2
Lalb_Chr20g0123601 Lupinus albus HOM05D005536 ORTHO05D006999 4.2e-210 734.9 525 73.0
Oeu049828.1 Olea europaea HOM05D005536 ORTHO05D006999 2.7e-209 732.3 495 76.2
Cc02_g22780 Coffea canephora HOM05D005536 ORTHO05D006999 3.6e-209 731.9 492 75.4
Ca_00061_v3 Cicer arietinum L. HOM05D005536 ORTHO05D006999 4.7e-209 731.5 490 75.7
MELO3C022605.2 Cucumis melo HOM05D005536 ORTHO05D006999 6.1e-209 731.1 512 72.3
CSS0004244 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 1.8e-208 729.6 491 75.8
Nn1g08381 Nelumbo nucifera HOM05D005536 ORTHO05D006999 1.8e-208 729.6 493 76.9
DCAR_006692 Daucus carota HOM05D005536 ORTHO05D006999 8.8e-208 727.2 496 75.4
Solyc01g103950.4 Solanum lycopersicum HOM05D005536 ORTHO05D006999 8.8e-208 727.2 521 73.3
VMungo0540G0609 Vigna mungo HOM05D005536 ORTHO05D006999 1.2e-207 726.9 513 72.1
CAN.G798.23 Capsicum annuum HOM05D005536 ORTHO05D006999 7.5e-207 724.2 521 73.3
Eucgr.G00559 Eucalyptus grandis HOM05D005536 ORTHO05D006999 1.3e-206 723.4 499 74.3
DCAR_025347 Daucus carota HOM05D005536 ORTHO05D006999 1.7e-206 723.0 523 72.5
Nitab4.5_0000948g0240 Nicotiana tabacum HOM05D005536 ORTHO05D006999 1.7e-206 723.0 491 76.2
Peaxi162Scf00011g00635 Petunia axillaris HOM05D005536 ORTHO05D006999 1.7e-206 723.0 491 76.4
PGR042G3208 Punica granatum HOM05D005536 ORTHO05D006999 2.2e-206 722.6 495 76.0
Sopen01g046340 Solanum pennellii HOM05D005536 ORTHO05D006999 2.8e-206 722.2 521 72.9
PGSC0003DMG401023772 Solanum tuberosum HOM05D005536 ORTHO05D006999 6.3e-206 721.1 491 76.0
Actinidia39023 Actinidia chinensis HOM05D005536 ORTHO05D006999 8.3e-206 720.7 491 77.2
arahy.Tifrunner.gnm1.ann1.CHH5X5 Arachis hypogaea HOM05D005536 ORTHO05D006999 1.4e-205 719.9 494 74.5
Aqoxy5G01212 Aquilegia oxysepala HOM05D005536 ORTHO05D006999 2.4e-205 719.2 498 74.5
CsaV3_5G012850 Cucumis sativus L. HOM05D005536 ORTHO05D006999 2.4e-205 719.2 507 72.2
Migut.B00813 Erythranthe guttata HOM05D005536 ORTHO05D006999 2.4e-205 719.2 521 71.4
Sed0010884 Sechium edule HOM05D005536 ORTHO05D006999 5.3e-205 718.0 517 72.0
Lj6g0001247 Lotus japonicus HOM05D005536 ORTHO05D006999 7.0e-205 717.6 489 74.0
PSO170G4094 Papaver somniferum HOM05D005536 ORTHO05D006999 7.0e-205 717.6 513 72.7
PSO017G0725 Papaver somniferum HOM05D005536 ORTHO05D006999 9.1e-205 717.2 507 73.4
MSTRG.20308 Avicennia marina HOM05D005536 ORTHO05D006999 1.6e-204 716.5 494 73.1
ECA236G1742 Erigeron canadensis HOM05D005536 ORTHO05D006999 3.5e-204 715.3 500 74.8
HanXRQChr16g0512011 Helianthus annuus HOM05D005536 ORTHO05D006999 3.5e-204 715.3 496 75.8
arahy.Tifrunner.gnm1.ann1.DFQ1AC Arachis hypogaea HOM05D005536 ORTHO05D006999 7.7e-204 714.1 496 73.8
Glyma.12G169900 Glycine max HOM05D005536 ORTHO05D006999 7.7e-204 714.1 500 72.4
Glyma.08G188200 Glycine max HOM05D005536 ORTHO05D006999 3.8e-203 711.8 488 74.2
Sc18g0006730 Simmondsia chinensis HOM05D005536 ORTHO05D006999 5.5e-202 708.0 513 70.8
SalBow8G1128 Salvia bowleyana HOM05D005536 ORTHO05D004100 9.4e-202 707.2 491 73.1
Lsat_1_v5_gn_7_79100 Lactuca sativa HOM05D005536 ORTHO05D006999 2.7e-201 705.7 489 75.1
Zm00001eb138710 Zea mays HOM05D005536 ORTHO05D006999 4.7e-201 704.9 494 72.7
Phvul.006G216300 Phaseolus vulgaris HOM05D005536 ORTHO05D006999 1.8e-200 703.0 487 73.3
AUR62003134 Chenopodium quinoa HOM05D005536 ORTHO05D006999 5.2e-200 701.4 498 73.9
AT1G22940 Arabidopsis thaliana HOM05D005536 ORTHO05D006999 1.5e-199 699.9 490 72.9
C05p22080 Brassica napus HOM05D005536 ORTHO05D006999 3.4e-199 698.7 490 73.1
BcaC05g26200 Brassica carinata HOM05D005536 ORTHO05D006999 2.2e-198 696.0 490 72.9
BolC5t30904H Brassica oleracea HOM05D005536 ORTHO05D006999 2.8e-198 695.7 490 72.7
CARHR023320 Cardamine hirsuta HOM05D005536 ORTHO05D006999 2.8e-198 695.7 500 72.2
A09p41800 Brassica napus HOM05D005536 ORTHO05D006999 3.7e-198 695.3 490 72.7
AL1G36500 Arabidopsis lyrata HOM05D005536 ORTHO05D006999 4.8e-198 694.9 490 72.4
Ah.03g139170 Amaranthus hybridus HOM05D005536 ORTHO05D006999 1.8e-197 693.0 506 70.9
Carub.0001s2244 Capsella rubella HOM05D005536 ORTHO05D006999 4.1e-197 691.8 491 72.5
BcaB07g32292 Brassica carinata HOM05D005536 ORTHO05D006999 1.2e-196 690.3 503 70.8
Thhalv10007358m.g Eutrema salsugineum HOM05D005536 ORTHO05D006999 2.0e-196 689.5 490 72.0
BraA09t39668Z Brassica rapa HOM05D005536 ORTHO05D006999 2.7e-196 689.1 493 72.0
Sp1g20400 Schrenkiella parvula HOM05D005536 ORTHO05D006999 2.7e-196 689.1 489 72.2
Aa31LG7G6950 Aethionema arabicum HOM05D005536 ORTHO05D006999 5.9e-196 688.0 502 70.5
MD15G1428400 Malus domestica HOM05D005536 ORTHO05D006999 2.3e-195 686.0 567 66.7
AUR62007953 Chenopodium quinoa HOM05D005536 ORTHO05D006999 6.6e-195 684.5 473 74.6
ATR1136G209 Amborella trichopoda HOM05D005536 ORTHO05D006999 2.0e-191 672.9 507 68.6
THA.LOC104806870 Tarenaya hassleriana HOM05D005536 ORTHO05D006999 2.0e-191 672.9 489 72.2
unitig_749.g13511 Utricularia gibba HOM05D005536 ORTHO05D006999 7.5e-191 671.0 520 67.7
Atru.chr6.551 Acer truncatum HOM05D005536 ORTHO05D006999 4.9e-190 668.3 438 78.3
COL.COLO4_11769 Corchorus olitorius HOM05D005536 ORTHO05D006999 5.0e-187 658.3 509 68.8
SEGI_00443 Sequoiadendron giganteum HOM05D005536 ORTHO05D006999 1.2e-183 647.1 513 66.3
HPP92_027057 Vanilla planifolia HOM05D005536 ORTHO05D006999 8.6e-171 604.4 515 61.7
SGA_v2.0_scaffold110G31339 Striga asiatica HOM05D005536 ORTHO05D006999 8.1e-169 597.8 641 53.4
FAN18G3948 Fragaria x ananassa HOM05D005536 ORTHO05D006999 8.9e-168 594.3 386 77.7
HPP92_011418 Vanilla planifolia HOM05D005536 ORTHO05D006999 8.3e-166 587.8 482 63.7
Nitab4.5_0002698g0120 Nicotiana tabacum HOM05D005536 ORTHO05D006999 1.2e-164 583.9 467 66.8
Pp3c1_39340 Physcomitrium patens HOM05D005536 ORTHO05D006999 6.8e-160 568.2 490 60.0
SMO244G0051 Selaginella moellendorffii HOM05D005536 ORTHO05D006999 1.3e-155 553.9 495 59.2
Mapoly0071s0067 Marchantia polymorpha HOM05D005536 ORTHO05D006999 7.3e-154 548.1 515 56.9
CDE04G3554 Ceratophyllum demersum HOM05D005536 ORTHO05D006999 7.1e-149 531.6 488 58.2
Hma1.2p1_1108F.1_g257730 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 2.7e-140 503.1 319 79.9
Hma1.2p1_3213F.1_g334040 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 1.5e-130 470.7 354 71.5
AagrBONN_evm.TU.Sc2ySwM_228.4801 Anthoceros agrestis HOM05D005536 ORTHO05D006999 4.6e-124 449.1 410 58.0
Cre08.g365600 Chlamydomonas reinhardtii HOM05D005536 ORTHO05D006999 6.1e-108 395.6 564 44.0
Hund15496 Selenicereus undatus HOM05D005536 ORTHO05D006999 8.5e-102 375.2 264 71.2
Zm00001eb264810 Zea mays HOM05D005536 ORTHO05D006999 1.4e-99 367.9 282 68.1
MD08G1236400 Malus domestica HOM05D005536 ORTHO05D006999 3.0e-83 313.5 287 60.3
CsaV3_5G012700 Cucumis sativus L. HOM05D005536 ORTHO05D006999 7.3e-77 292.4 370 47.3
Ca_00038_v3 Cicer arietinum L. HOM05D005536 ORTHO05D006999 5.4e-72 276.2 189 69.8
Actinidia00197 Actinidia chinensis HOM05D005536 ORTHO05D006999 3.5e-71 273.5 460 42.2
Cpa.g.c34456.1 Carica papaya HOM05D005536 ORTHO05D006999 3.5e-71 273.5 174 79.9
Cpa.g.sc31.109 Carica papaya HOM05D005536 ORTHO05D006999 4.6e-63 246.5 149 81.9
PGR044G0806 Punica granatum HOM05D005536 ORTHO05D006999 2.2e-57 227.6 161 74.5
CBR_g6347 Chara braunii HOM05D000019 ORTHO05D000800 1.7e-54 218.0 223 51.6
Actinidia27730 Actinidia chinensis HOM05D005536 ORTHO05D006999 9.5e-53 212.2 142 71.1
MD15G1428300 Malus domestica HOM05D005536 ORTHO05D006999 5.1e-46 189.9 133 76.7
Cpa.g.sc31.106 Carica papaya HOM05D005536 ORTHO05D006999 1.1e-45 188.7 152 69.7
EL10Ac6g14966 Beta vulgaris HOM05D005536 ORTHO05D006999 5.8e-42 176.4 121 72.7
Actinidia27729 Actinidia chinensis HOM05D005536 ORTHO05D006999 9.3e-40 169.1 156 57.1
CBR_g6345 Chara braunii HOM05D005536 ORTHO05D006999 1.6e-39 168.3 148 59.5
CsaV3_5G012690 Cucumis sativus L. HOM05D005536 ORTHO05D006999 1.2e-34 152.1 174 51.1
CSS0010000 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 2.0e-34 151.4 99 80.8
CSS0024456 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 2.0e-34 151.4 99 80.8
Cfa024720 Carpinus fangiana HOM05D005536 ORTHO05D006999 1.4e-32 145.2 225 41.3
Os12g0192500 Oryza sativa ssp. japonica HOM05D005536 ORTHO05D006999 2.1e-31 141.4 97 72.2
MD08G1236300 Malus domestica HOM05D005536 ORTHO05D006999 6.7e-30 136.3 133 60.9
Actinidia02850 Actinidia chinensis HOM05D005536 ORTHO05D006999 4.3e-29 133.7 297 34.7
Cpa.g.sc31.103 Carica papaya HOM05D005536 ORTHO05D006999 8.1e-28 129.4 119 58.0
Actinidia02848 Actinidia chinensis HOM05D005536 ORTHO05D006999 1.0e-17 95.9 92 60.9
ECA236G5131 Erigeron canadensis HOM05D005536 ORTHO05D006999 4.2e-16 90.5 62 72.6
Haze_27076 Corylus avellana HOM05D005536 ORTHO05D006999 2.3e-14 84.7 138 39.1
Actinidia27731 Actinidia chinensis HOM05D005536 ORTHO05D006999 6.7e-14 83.2 63 73.0
Cpa.g.sc31.102 Carica papaya HOM05D005536 ORTHO05D006999 4.8e-12 77.0 107 48.6
COL.COLO4_00968 Corchorus olitorius HOM05D005536 ORTHO05D155286 1.4e-11 75.5 203 29.1
CARHR153920 Cardamine hirsuta HOM05D005536 ORTHO05D116486 3.4e-10 70.9 82 50.0
CDE04G3097 Ceratophyllum demersum HOM05D005540 ORTHO05D006932 3.6e-07 60.8 111 34.2
CDE06G0494 Ceratophyllum demersum HOM05D005540 ORTHO05D006932 3.6e-07 60.8 111 33.3
unitig_0.g2608 Utricularia gibba HOM05D005540 ORTHO05D006932 6.1e-07 60.1 169 30.8
Medtr2g006225 Medicago truncatula HOM05D005536 ORTHO05D266164 1.8e-06 58.5 76 47.4
Sed0017329 Sechium edule HOM05D005540 ORTHO05D006932 2.3e-06 58.2 111 34.2
Sed0021451 Sechium edule HOM05D005540 ORTHO05D006932 3.0e-06 57.8 102 36.3
CANSAT78G2033 Cannabis sativa HOM05D005540 ORTHO05D006932 5.1e-06 57.0 121 30.6
Rhsim08G0085100 Rhododendron simsii HOM05D005540 ORTHO05D006932 6.7e-06 56.6 82 36.6
Sed0014193 Sechium edule HOM05D005540 ORTHO05D006932 6.7e-06 56.6 111 32.4
ClCG05G010900 Citrullus lanatus HOM05D005540 ORTHO05D006932 8.7e-06 56.2 102 33.3


User provided reference genes

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