Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G009600 Populus trichocarpa HOM05D004134 ORTHO05D005240 0.0e+00 1441.8 729 100.0
Sabra03G0005000 Salix brachista HOM05D004134 ORTHO05D005240 0.0e+00 1171.0 700 86.6
Dinv19398 Davidia involucrata HOM05D004134 ORTHO05D005240 0.0e+00 1154.4 726 77.3
CSS0009525 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 0.0e+00 1138.3 622 85.5
CSS0031590 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 0.0e+00 1137.1 621 85.7
CiPaw.05G006000 Carya illinoinensis HOM05D004134 ORTHO05D005240 0.0e+00 1134.8 682 80.1
Thecc.01G149600 Theobroma cacao HOM05D004134 ORTHO05D005240 0.0e+00 1132.9 659 81.5
Haze_10066 Corylus avellana HOM05D004134 ORTHO05D005240 0.0e+00 1128.6 661 81.5
Haze_10069 Corylus avellana HOM05D004134 ORTHO05D005240 0.0e+00 1126.3 680 79.9
Duzib264G0885 Durio zibethinus HOM05D004134 ORTHO05D005240 0.0e+00 1123.6 635 82.2
Actinidia26163 Actinidia chinensis HOM05D004134 ORTHO05D005240 0.0e+00 1122.1 619 84.3
Gohir.D12G002200 Gossypium hirsutum HOM05D004134 ORTHO05D005240 0.0e+00 1116.7 634 82.0
Gorai.008G001600 Gossypium raimondii HOM05D004134 ORTHO05D005240 0.0e+00 1116.3 634 82.2
Duzib147G1693 Durio zibethinus HOM05D004134 ORTHO05D005240 0.0e+00 1115.5 656 80.3
Gohir.A12G002500 Gossypium hirsutum HOM05D004134 ORTHO05D005240 0.0e+00 1111.3 634 81.9
PGR042G0619 Punica granatum HOM05D004134 ORTHO05D005240 0.0e+00 1109.4 699 78.8
Manes.02G223500 Manihot esculenta HOM05D004134 ORTHO05D005240 0.0e+00 1108.2 617 83.8
TWI23G0224 Tripterygium wilfordii HOM05D004134 ORTHO05D005240 0.0e+00 1105.1 633 81.4
Nn1g06242 Nelumbo nucifera HOM05D004134 ORTHO05D005240 0.0e+00 1103.2 661 78.7
Ciclev10000416m.g Citrus clementina HOM05D004134 ORTHO05D005240 0.0e+00 1100.5 619 82.9
Rhsim10G0097200 Rhododendron simsii HOM05D004134 ORTHO05D005240 0.0e+00 1097.4 657 80.1
Sed0024495 Sechium edule HOM05D004134 ORTHO05D005240 0.0e+00 1097.4 707 76.1
RhsimUnG0241700 Rhododendron simsii HOM05D004134 ORTHO05D005240 0.0e+00 1097.0 697 76.2
COL.COLO4_33567 Corchorus olitorius HOM05D004134 ORTHO05D005240 0.0e+00 1092.8 628 82.0
THA.LOC104801417 Tarenaya hassleriana HOM05D004134 ORTHO05D005240 0.0e+00 1089.3 639 80.0
PGSC0003DMG400024925 Solanum tuberosum HOM05D004134 ORTHO05D005240 0.0e+00 1088.6 733 72.7
Cfa014311 Carpinus fangiana HOM05D004134 ORTHO05D001258 0.0e+00 1086.6 615 82.9
Lju50A15T20 Lonicera japonica HOM05D004134 ORTHO05D005240 0.0e+00 1085.9 680 77.4
Potri.004G222500 Populus trichocarpa HOM05D004134 ORTHO05D005240 0.0e+00 1085.9 539 94.6
Atru.chr6.762 Acer truncatum HOM05D004134 ORTHO05D005240 0.0e+00 1083.9 707 76.1
Glyma.16G003700 Glycine max HOM05D004134 ORTHO05D005240 0.0e+00 1083.2 637 79.9
Phvul.006G218200 Phaseolus vulgaris HOM05D004134 ORTHO05D005240 0.0e+00 1080.5 634 79.7
Sabra01G0168600 Salix brachista HOM05D004134 ORTHO05D005240 0.0e+00 1079.3 813 71.3
Lj8C281T2 Lonicera japonica HOM05D004134 ORTHO05D005240 0.0e+00 1075.5 616 82.6
Glyma.12G167800 Glycine max HOM05D004134 ORTHO05D005240 5.0e-312 1074.7 659 77.2
TAR381G1335 Trochodendron aralioides HOM05D004134 ORTHO05D005240 1.0e-311 1072.8 623 79.9
Sc12g0003380 Simmondsia chinensis HOM05D004134 ORTHO05D005240 1.0e-310 1069.7 630 80.5
CsaV3_5G039580 Cucumis sativus L. HOM05D004134 ORTHO05D005240 2.9e-310 1068.1 704 73.6
MELO3C022134.2 Cucumis melo HOM05D004134 ORTHO05D005240 8.4e-310 1066.6 706 72.9
QL02p100166 Quercus lobata HOM05D004134 ORTHO05D005240 3.2e-309 1064.7 710 73.2
Eucgr.G00349 Eucalyptus grandis HOM05D004134 ORTHO05D005240 2.3e-307 1058.5 619 80.0
VMungo0540G2254 Vigna mungo HOM05D004134 ORTHO05D005240 3.0e-307 1058.1 711 73.3
CANSAT54G0881 Cannabis sativa HOM05D004134 ORTHO05D005240 8.7e-307 1056.6 679 74.7
TPR.G2118 Trifolium pratense HOM05D004134 ORTHO05D005240 1.1e-306 1056.2 658 75.1
GSVIVG01004116001 Vitis vinifera HOM05D004134 ORTHO05D005240 5.6e-306 1053.9 630 80.3
MSTRG.5116 Avicennia marina HOM05D004134 ORTHO05D005240 2.8e-305 1051.6 701 71.8
Psat0s1535g0080 Pisum sativum HOM05D004134 ORTHO05D005240 2.1e-300 1035.4 637 76.0
Prupe.7G053600 Prunus persica HOM05D004134 ORTHO05D005240 2.1e-300 1035.4 663 76.2
Ca_00047_v3 Cicer arietinum L. HOM05D004134 ORTHO05D005240 7.9e-300 1033.5 619 76.7
Aa31LG3G10940 Aethionema arabicum HOM05D004134 ORTHO05D005240 5.6e-298 1027.3 642 74.6
Lj6g0001374 Lotus japonicus HOM05D004134 ORTHO05D005240 4.8e-297 1024.2 625 75.8
HanXRQChr07g0187421 Helianthus annuus HOM05D004134 ORTHO05D005240 6.2e-297 1023.8 666 74.5
Lj8C283T12 Lonicera japonica HOM05D004134 ORTHO05D005240 6.9e-296 1020.4 616 78.6
arahy.Tifrunner.gnm1.ann1.FJZE1E Arachis hypogaea HOM05D004134 ORTHO05D005240 2.0e-295 1018.8 688 71.8
arahy.Tifrunner.gnm1.ann1.PV76CP Arachis hypogaea HOM05D004134 ORTHO05D005240 1.0e-294 1016.5 690 71.7
CAN.G798.51 Capsicum annuum HOM05D004134 ORTHO05D005240 1.7e-294 1015.8 638 76.3
Medtr2g006020 Medicago truncatula HOM05D004134 ORTHO05D005240 2.1e-292 1008.8 681 69.8
SGA_v2.0_scaffold272G46372 Striga asiatica HOM05D004134 ORTHO05D005240 6.0e-292 1007.3 669 72.0
Lsat_1_v5_gn_7_76380 Lactuca sativa HOM05D004134 ORTHO05D005240 5.1e-291 1004.2 625 77.0
Migut.B00788 Erythranthe guttata HOM05D004134 ORTHO05D005240 2.5e-290 1001.9 713 68.0
BcaC02g12241 Brassica carinata HOM05D004134 ORTHO05D005240 3.3e-290 1001.5 626 74.6
C04p06100 Brassica napus HOM05D004134 ORTHO05D005240 3.3e-290 1001.5 626 74.6
BolC4t22236H Brassica oleracea HOM05D004134 ORTHO05D005240 3.3e-290 1001.5 626 74.6
AL4G38180 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 3.7e-289 998.0 625 74.2
Carub.0004s2260 Capsella rubella HOM05D004134 ORTHO05D005240 3.7e-289 998.0 625 74.2
BcaB02g08952 Brassica carinata HOM05D004134 ORTHO05D005240 2.4e-288 995.3 622 74.3
A05p05210 Brassica napus HOM05D004134 ORTHO05D005240 2.4e-288 995.3 619 74.5
BraA05t19492Z Brassica rapa HOM05D004134 ORTHO05D005240 5.3e-288 994.2 618 74.6
Sp4g27170 Schrenkiella parvula HOM05D004134 ORTHO05D005240 6.9e-288 993.8 750 67.1
BraA03t11704Z Brassica rapa HOM05D004134 ORTHO05D005240 2.6e-287 991.9 721 67.4
C03p29850 Brassica napus HOM05D004134 ORTHO05D005240 7.7e-287 990.3 626 73.6
MD10G1070100 Malus domestica HOM05D004134 ORTHO05D005240 1.7e-286 989.2 638 75.7
BolC3t15332H Brassica oleracea HOM05D004134 ORTHO05D005240 2.2e-286 988.8 626 73.5
BcaC01g05160 Brassica carinata HOM05D004134 ORTHO05D005240 5.0e-286 987.6 626 73.5
A03p25010 Brassica napus HOM05D004134 ORTHO05D005240 7.2e-285 983.8 721 67.1
Solyc01g103720.4 Solanum lycopersicum HOM05D004134 ORTHO05D005240 6.1e-284 980.7 564 80.9
vmacro19872 Vaccinium macrocarpon HOM05D004134 ORTHO05D005240 6.1e-284 980.7 695 71.7
FvH4_5g21650 Fragaria vesca HOM05D004134 ORTHO05D005240 1.4e-283 979.5 689 69.5
AT2G40360 Arabidopsis thaliana HOM05D004134 ORTHO05D005240 3.0e-283 978.4 625 72.3
FAN18G3216 Fragaria x ananassa HOM05D004134 ORTHO05D005240 6.7e-283 977.2 695 69.2
SGA_v2.0_scaffold304G47905 Striga asiatica HOM05D004134 ORTHO05D005240 1.5e-282 976.1 667 70.8
MD05G1062400 Malus domestica HOM05D004134 ORTHO05D005240 5.7e-282 974.2 668 72.8
BcaB01g03295 Brassica carinata HOM05D004134 ORTHO05D005240 9.7e-282 973.4 617 73.3
DCAR_001836 Daucus carota HOM05D004134 ORTHO05D005240 1.7e-281 972.6 655 71.0
Hund16551 Selenicereus undatus HOM05D004134 ORTHO05D005240 3.4e-279 964.9 674 68.4
MBI13_g20493_MAGBIO Magnolia biondii HOM05D004134 ORTHO05D005240 3.8e-278 961.4 571 79.3
CARHR135440 Cardamine hirsuta HOM05D004134 ORTHO05D005240 1.4e-275 953.0 747 62.7
Oeu034147.1 Olea europaea HOM05D004134 ORTHO05D005240 2.3e-275 952.2 601 75.0
PSO384G1237 Papaver somniferum HOM05D004134 ORTHO05D005240 6.7e-275 950.7 619 72.5
PSO339G3543 Papaver somniferum HOM05D004134 ORTHO05D005240 8.8e-275 950.3 619 72.4
Aqoxy6G03049 Aquilegia oxysepala HOM05D004134 ORTHO05D005240 1.3e-273 946.4 628 71.7
Dinv07474 Davidia involucrata HOM05D004134 ORTHO05D005240 2.8e-273 945.3 606 76.9
Zm00001eb131370 Zea mays HOM05D004134 ORTHO05D005240 1.0e-270 936.8 678 65.2
Hma1.2p1_0427F.1_g150710 Hydrangea macrophylla HOM05D004134 ORTHO05D005240 5.0e-270 934.5 625 72.8
Thhalv10001320m.g Eutrema salsugineum HOM05D004134 ORTHO05D005240 1.1e-269 933.3 661 68.2
EL10Ac6g14818 Beta vulgaris HOM05D004134 ORTHO05D005240 1.4e-267 926.4 642 68.8
PSO063G3695 Papaver somniferum HOM05D004134 ORTHO05D005240 2.6e-263 912.1 639 68.5
FAN04G2346 Fragaria x ananassa HOM05D004134 ORTHO05D005240 1.5e-258 896.3 695 65.2
FAN13G2390 Fragaria x ananassa HOM05D004134 ORTHO05D005240 2.0e-258 896.0 759 61.0
unitig_899.g15494 Utricularia gibba HOM05D004134 ORTHO05D005240 2.5e-253 879.0 651 66.2
SalBow1G3184 Salvia bowleyana HOM05D004134 ORTHO05D005240 3.6e-252 875.2 637 67.0
RcHm_v2.0_Chr7g0241541 Rosa chinensis HOM05D004134 ORTHO05D005240 2.6e-250 869.0 670 66.3
AL3G45050 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 1.9e-245 852.8 620 65.5
SalBow8G0286 Salvia bowleyana HOM05D004134 ORTHO05D005240 3.6e-244 848.6 637 65.6
RcHm_v2.0_Chr7g0209131 Rosa chinensis HOM05D004134 ORTHO05D005240 8.0e-244 847.4 658 65.2
Mapoly0025s0073 Marchantia polymorpha HOM05D004134 ORTHO05D005240 2.2e-241 839.3 626 61.8
SMO361G0066 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 1.6e-236 823.2 655 60.6
Prupe.6G114000 Prunus persica HOM05D004134 ORTHO05D005240 9.8e-234 813.9 675 62.7
Pp3c18_14790 Physcomitrium patens HOM05D004134 ORTHO05D005240 1.7e-233 813.1 640 60.0
Haze_12759 Corylus avellana HOM05D004134 ORTHO05D005240 4.9e-233 811.6 680 63.5
Nitab4.5_0002596g0050 Nicotiana tabacum HOM05D004134 ORTHO05D005240 5.0e-230 801.6 739 57.1
CARHR115520 Cardamine hirsuta HOM05D004134 ORTHO05D005240 2.9e-225 785.8 553 66.4
CBR_g19000 Chara braunii HOM05D004134 ORTHO05D005240 8.3e-225 784.3 685 55.8
SMO004G0015 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 8.3e-225 784.3 621 61.0
Nitab4.5_0000948g0120 Nicotiana tabacum HOM05D004134 ORTHO05D005240 1.1e-208 730.7 662 57.3
ClCG08G001520 Citrullus lanatus HOM05D004134 ORTHO05D005240 1.4e-208 730.3 444 78.2
Cpa.g.sc612.1 Carica papaya HOM05D004134 ORTHO05D005240 2.7e-207 726.1 635 59.7
Sopen01g046140 Solanum pennellii HOM05D004134 ORTHO05D005240 2.8e-204 716.1 552 65.2
Lalb_Chr21g0308281 Lupinus albus HOM05D004134 ORTHO05D005240 6.2e-204 714.9 465 74.6
AagrBONN_evm.TU.Sc2ySwM_344.2863 Anthoceros agrestis HOM05D004134 ORTHO05D005240 6.4e-201 704.9 554 60.3
SalBow8G3818 Salvia bowleyana HOM05D004134 ORTHO05D005240 1.4e-200 703.7 536 64.4
SalBow8G2435 Salvia bowleyana HOM05D004134 ORTHO05D005240 3.9e-198 695.7 637 57.3
RcHm_v2.0_Chr7g0241521 Rosa chinensis HOM05D004134 ORTHO05D005240 1.3e-196 690.6 474 73.0
Peaxi162Scf00011g00938 Petunia axillaris HOM05D004134 ORTHO05D005240 1.1e-184 651.0 464 69.0
Cc07_g19170 Coffea canephora HOM05D004134 ORTHO05D005240 5.1e-182 642.1 432 70.4
AUR62027202 Chenopodium quinoa HOM05D004134 ORTHO05D005240 8.2e-180 634.8 507 62.5
Ah.09g229700 Amaranthus hybridus HOM05D004134 ORTHO05D005240 2.2e-177 626.7 458 65.3
ATR0681G288 Amborella trichopoda HOM05D004134 ORTHO05D005240 5.5e-176 622.1 423 68.6
ATR0598G150 Amborella trichopoda HOM05D004134 ORTHO05D005240 4.6e-175 619.0 423 68.3
Cre10.g417950 Chlamydomonas reinhardtii HOM05D004134 ORTHO05D005240 6.7e-174 615.1 678 48.2
PRCOL_00006650 Prasinoderma coloniale HOM05D004134 ORTHO05D005240 2.0e-165 587.0 730 43.3
Haze_26888 Corylus avellana HOM05D004134 ORTHO05D005240 1.8e-150 537.3 647 43.1
HPP92_014183 Vanilla planifolia HOM05D004134 ORTHO05D005240 1.7e-145 520.8 430 60.7
Cfa026475 Carpinus fangiana HOM05D004134 ORTHO05D005240 5.2e-142 509.2 669 41.6
AUR62003266 Chenopodium quinoa HOM05D004134 ORTHO05D005240 2.8e-140 503.4 504 52.8
MCO01G460 Micromonas commoda HOM05D004134 ORTHO05D005240 2.7e-135 486.9 620 40.8
AL6G11500 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 8.0e-127 458.8 319 65.8
Ah.09g232800 Amaranthus hybridus HOM05D004134 ORTHO05D005240 4.0e-110 403.3 434 49.1
Cpa.g.sc5814.1 Carica papaya HOM05D004134 ORTHO05D005240 1.7e-105 387.9 226 81.0
Cc07_g19180 Coffea canephora HOM05D004134 ORTHO05D005240 2.1e-98 364.4 189 87.8
Lalb_Chr21g0308271 Lupinus albus HOM05D004134 ORTHO05D005240 8.6e-97 359.0 192 84.4
Sopen01g046130 Solanum pennellii HOM05D004134 ORTHO05D005240 2.8e-95 354.0 183 88.5
TAR376G0266 Trochodendron aralioides HOM05D004134 ORTHO05D005240 6.0e-90 336.3 169 89.3
Carub.0008s0866 Capsella rubella HOM05D004134 ORTHO05D005240 1.2e-82 312.0 197 72.6
ATR0681G369 Amborella trichopoda HOM05D004134 ORTHO05D005240 8.7e-81 305.8 185 73.5
ATR0598G203 Amborella trichopoda HOM05D004134 ORTHO05D005240 1.1e-80 305.4 185 73.5
RcHm_v2.0_Chr7g0241531 Rosa chinensis HOM05D004134 ORTHO05D005240 1.3e-76 292.0 185 71.9
HPP92_014184 Vanilla planifolia HOM05D004134 ORTHO05D005240 7.9e-74 282.7 156 80.8
ClCG09G010900 Citrullus lanatus HOM05D004134 ORTHO05D005240 3.8e-68 263.8 136 86.0
Ah.09g229690 Amaranthus hybridus HOM05D004134 ORTHO05D005240 2.7e-66 257.7 166 72.9
ECA236G2574 Erigeron canadensis HOM05D004134 ORTHO05D005240 3.6e-58 230.7 168 66.7
A05p05190 Brassica napus HOM05D004134 ORTHO05D005240 3.3e-56 224.2 151 68.2
SalBow8G0646 Salvia bowleyana HOM05D004134 ORTHO05D005240 2.2e-52 211.5 103 90.3
Peaxi162Scf00011g00939 Petunia axillaris HOM05D004134 ORTHO05D005240 1.1e-43 182.6 84 95.2
BcaC02g12245 Brassica carinata HOM05D004134 ORTHO05D005240 1.9e-43 181.8 113 75.2
Lsat_1_v5_gn_5_138060 Lactuca sativa HOM05D004134 ORTHO05D005240 2.3e-41 174.9 111 73.9
TAR087G0001 Trochodendron aralioides HOM05D004134 ORTHO05D005240 1.0e-36 159.5 106 72.6
C04p06060 Brassica napus HOM05D004134 ORTHO05D005240 3.7e-31 141.0 79 78.5
BcaC01g05161 Brassica carinata HOM05D004134 ORTHO05D005240 4.1e-30 137.5 119 52.1
Migut.I00323 Erythranthe guttata HOM05D004134 ORTHO05D005240 1.1e-27 129.4 75 77.3
Lsat_1_v5_gn_2_109841 Lactuca sativa HOM05D004134 ORTHO05D005240 9.4e-27 126.3 72 80.6
SGA_v2.0_scaffold318G48508 Striga asiatica HOM05D001260 ORTHO05D002424 1.4e-25 122.5 85 67.1
Psat2g083520 Pisum sativum HOM05D004134 ORTHO05D023219 2.3e-25 121.7 149 45.0
TPR.G18539 Trifolium pratense HOM05D001024 ORTHO05D000878 1.5e-24 119.0 85 65.9
Ah.03g141930 Amaranthus hybridus HOM05D004134 ORTHO05D005240 3.1e-14 84.7 50 72.0
SGA_v2.0_scaffold94G28534 Striga asiatica HOM05D004134 ORTHO05D023219 3.3e-11 74.7 50 70.0
Atru.chr11.847 Acer truncatum HOM05D004134 ORTHO05D023219 1.6e-10 72.4 44 77.3
SGA_v2.0_scaffold2705G54186 Striga asiatica HOM05D004134 ORTHO05D023219 1.5e-08 65.9 43 72.1
HanXRQChr08g0221231 Helianthus annuus HOM05D001260 ORTHO05D004134 7.5e-08 63.5 285 21.1
Sabra01G0062700 Salix brachista HOM05D000645 ORTHO05D000494 9.8e-08 63.2 351 21.7
SGA_v2.0_scaffold94G28589 Striga asiatica HOM05D000645 ORTHO05D000494 1.3e-07 62.8 298 24.5
SMO361G0390 Selaginella moellendorffii HOM05D002303 ORTHO05D006504 1.4e-06 59.3 269 26.0
Rhsim11G0125000 Rhododendron simsii HOM05D004134 ORTHO05D339485 3.2e-06 58.2 62 51.6
Migut.L01939 Erythranthe guttata HOM05D000645 ORTHO05D000494 7.0e-06 57.0 248 24.2


User provided reference genes

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