Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G156100 Phaseolus vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1655.2 811 100.0
Glyma.12G146600 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1521.1 811 91.5
Glyma.06G255000 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1507.7 811 90.4
Lj3g0027191 Lotus japonicus HOM05D004364 ORTHO05D006299 0.0e+00 1467.6 809 87.8
Ca_01795_v3 Cicer arietinum L. HOM05D004364 ORTHO05D006299 0.0e+00 1420.2 805 84.2
Lalb_Chr06g0175311 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1411.4 810 83.3
TPR.G32881 Trifolium pratense HOM05D004364 ORTHO05D006299 0.0e+00 1407.9 804 83.8
arahy.Tifrunner.gnm1.ann1.19RIMK Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1405.2 809 82.7
Psat5g247520 Pisum sativum HOM05D004364 ORTHO05D006299 0.0e+00 1401.3 806 83.0
Lalb_Chr02g0159341 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1399.4 810 83.0
Medtr2g081180 Medicago truncatula HOM05D004364 ORTHO05D006299 0.0e+00 1396.3 806 82.1
arahy.Tifrunner.gnm1.ann1.B7TU6S Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1389.0 809 82.3
Cfa020489 Carpinus fangiana HOM05D004364 ORTHO05D006299 0.0e+00 1382.5 811 82.6
TWI39G0400 Tripterygium wilfordii HOM05D004364 ORTHO05D006299 0.0e+00 1380.2 809 82.4
Manes.03G117700 Manihot esculenta HOM05D004364 ORTHO05D006299 0.0e+00 1379.0 806 82.1
Potri.011G125800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1373.6 807 82.3
MD11G1234900 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1370.5 808 81.8
Prupe.4G192200 Prunus persica HOM05D004364 ORTHO05D006299 0.0e+00 1368.6 809 81.5
Potri.001G408800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1365.1 808 82.1
CiPaw.11G178500 Carya illinoinensis HOM05D004364 ORTHO05D006299 0.0e+00 1362.8 805 81.4
Sabra11G0111700 Salix brachista HOM05D004364 ORTHO05D006299 0.0e+00 1362.8 818 80.8
FvH4_3g21160 Fragaria vesca HOM05D004364 ORTHO05D006299 0.0e+00 1359.7 809 80.6
RcHm_v2.0_Chr5g0036241 Rosa chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1359.4 809 80.8
GSVIVG01014465001 Vitis vinifera HOM05D004364 ORTHO05D006299 0.0e+00 1358.6 807 81.4
Atru.chr2.2938 Acer truncatum HOM05D004364 ORTHO05D006299 0.0e+00 1354.7 809 81.0
FAN11G0387 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1350.1 813 80.0
MD03G1217200 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1348.6 808 80.7
FAN16G3737 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1346.6 813 80.1
CANSAT11G0334 Cannabis sativa HOM05D004364 ORTHO05D006299 0.0e+00 1342.0 809 80.0
Gohir.D08G031200 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1341.6 811 80.8
PGR083G1074 Punica granatum HOM05D004364 ORTHO05D006299 0.0e+00 1341.3 808 79.8
Ciclev10007478m.g Citrus clementina HOM05D004364 ORTHO05D006299 0.0e+00 1340.9 810 79.5
FAN25G2975 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1340.5 813 79.7
Gohir.A08G020600 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1340.5 811 80.9
Gorai.004G028800 Gossypium raimondii HOM05D004364 ORTHO05D006299 0.0e+00 1340.5 811 80.8
Duzib170G0088 Durio zibethinus HOM05D004364 ORTHO05D006299 0.0e+00 1338.9 811 80.9
Cpa.g.sc12.20 Carica papaya HOM05D004364 ORTHO05D006299 0.0e+00 1336.6 816 79.7
Eucgr.F01066 Eucalyptus grandis HOM05D004364 ORTHO05D006299 0.0e+00 1336.6 808 79.7
MELO3C018182.2 Cucumis melo HOM05D004364 ORTHO05D006299 0.0e+00 1335.1 809 79.0
CsaV3_3G044300 Cucumis sativus L. HOM05D004364 ORTHO05D006299 0.0e+00 1331.2 809 78.9
Thecc.07G069000 Theobroma cacao HOM05D004364 ORTHO05D006299 0.0e+00 1328.5 811 80.4
Sed0018829 Sechium edule HOM05D004364 ORTHO05D006299 0.0e+00 1327.4 812 78.7
Nn1g06827 Nelumbo nucifera HOM05D004364 ORTHO05D006299 0.0e+00 1326.2 807 79.6
TAR626G1658 Trochodendron aralioides HOM05D004364 ORTHO05D006299 0.0e+00 1313.5 811 77.9
THA.LOC104816919 Tarenaya hassleriana HOM05D004364 ORTHO05D006299 0.0e+00 1307.7 819 77.4
ClCG11G018570 Citrullus lanatus HOM05D004364 ORTHO05D006299 0.0e+00 1306.2 888 72.7
Haze_09550 Corylus avellana HOM05D004364 ORTHO05D006299 0.0e+00 1306.2 831 78.1
CSS0001646 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1297.7 807 77.6
PSO832G2674 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1294.3 809 77.5
FAN21G1304 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1291.2 809 77.4
PSO210G4872 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1288.9 809 77.0
HanXRQChr03g0076071 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1286.9 804 77.0
Sp3g18670 Schrenkiella parvula HOM05D004364 ORTHO05D006299 0.0e+00 1286.9 805 76.6
BcaB04g19118 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1283.1 805 76.1
Sc16g0006700 Simmondsia chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1281.9 808 75.4
A05p28190 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1278.8 805 75.8
C05p43630 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1278.8 805 75.9
Thhalv10020069m.g Eutrema salsugineum HOM05D004364 ORTHO05D006299 0.0e+00 1278.8 806 76.6
A03p41850 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1278.1 805 75.9
HanXRQChr13g0407291 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1277.3 806 76.3
BcaC01g03545 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1275.4 805 75.7
C03p51230 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1275.4 805 75.7
AL3G34510 Arabidopsis lyrata HOM05D004364 ORTHO05D006299 0.0e+00 1274.6 806 76.1
BraA03t13338Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1274.6 806 75.9
BraA05t21700Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1274.2 806 75.7
AT3G20630 Arabidopsis thaliana HOM05D004364 ORTHO05D006299 0.0e+00 1273.8 806 75.7
ECA240G1374 Erigeron canadensis HOM05D004364 ORTHO05D006299 0.0e+00 1273.1 796 76.9
BolC3t17413H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1271.9 806 75.7
Hma1.2p1_0015F.1_g010280 Hydrangea macrophylla HOM05D004364 ORTHO05D006299 0.0e+00 1270.0 808 76.5
BolC5t33082H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1269.6 806 75.3
Solyc07g063650.4 Solanum lycopersicum HOM05D004364 ORTHO05D006299 0.0e+00 1268.8 806 76.4
Aqoxy1G03944 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1266.5 806 76.9
Sopen07g031830 Solanum pennellii HOM05D004364 ORTHO05D006299 0.0e+00 1265.4 806 76.2
BcaB06g26128 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1262.3 805 74.9
CAN.G162.111 Capsicum annuum HOM05D004364 ORTHO05D006299 0.0e+00 1260.0 806 75.3
Cc05_g12790 Coffea canephora HOM05D004364 ORTHO05D006299 0.0e+00 1260.0 804 75.1
BcaC05g28303 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1257.3 807 75.1
CARHR096430 Cardamine hirsuta HOM05D004364 ORTHO05D006299 0.0e+00 1252.7 805 74.4
Oeu060533.1 Olea europaea HOM05D004364 ORTHO05D006299 0.0e+00 1252.3 806 75.2
DCAR_008692 Daucus carota HOM05D004364 ORTHO05D006299 0.0e+00 1241.1 801 74.2
Migut.H01895 Erythranthe guttata HOM05D004364 ORTHO05D006299 0.0e+00 1240.7 804 73.9
AUR62041167 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1238.4 818 73.5
Nitab4.5_0001386g0060 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1236.5 806 73.2
MSTRG.12935 Avicennia marina HOM05D004364 ORTHO05D006299 0.0e+00 1235.3 804 73.6
AUR62029293 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1235.3 809 73.9
Lj8C162G4 Lonicera japonica HOM05D004364 ORTHO05D006299 0.0e+00 1232.2 782 76.9
Aa31LG8G7430 Aethionema arabicum HOM05D004364 ORTHO05D006299 0.0e+00 1226.8 861 69.7
EL10Ac4g08041 Beta vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1219.1 809 72.7
Ah.04g165340 Amaranthus hybridus HOM05D004364 ORTHO05D006299 0.0e+00 1215.7 811 72.1
Aqoxy5G02435 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1210.3 809 73.7
Hund02178 Selenicereus undatus HOM05D004364 ORTHO05D006299 0.0e+00 1208.4 808 72.5
SalBow7G1127 Salvia bowleyana HOM05D004364 ORTHO05D006299 0.0e+00 1206.0 865 68.3
Peaxi162Scf01216g00070 Petunia axillaris HOM05D004364 ORTHO05D006299 0.0e+00 1201.8 805 72.8
ATR1132G023 Amborella trichopoda HOM05D004364 ORTHO05D006299 0.0e+00 1194.1 856 67.9
COL.COLO4_09498 Corchorus olitorius HOM05D004364 ORTHO05D006299 0.0e+00 1191.8 811 74.1
HPP92_005995 Vanilla planifolia HOM05D004364 ORTHO05D006299 0.0e+00 1189.5 809 70.3
SGA_v2.0_scaffold9G04963 Striga asiatica HOM05D004364 ORTHO05D006299 0.0e+00 1188.3 804 71.6
SEGI_22005 Sequoiadendron giganteum HOM05D004364 ORTHO05D006299 0.0e+00 1187.6 806 70.3
Carub.0003s2061 Capsella rubella HOM05D004364 ORTHO05D006299 0.0e+00 1181.0 764 75.1
QL08p017220 Quercus lobata HOM05D004364 ORTHO05D006299 0.0e+00 1177.9 965 63.9
vmacro09573 Vaccinium macrocarpon HOM05D004364 ORTHO05D006299 0.0e+00 1171.8 910 65.3
Zm00001eb336890 Zea mays HOM05D004364 ORTHO05D006299 0.0e+00 1167.1 809 69.8
Os01g0177200 Oryza sativa ssp. japonica HOM05D004364 ORTHO05D006299 0.0e+00 1164.8 811 68.6
CSS0013066 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1161.0 807 71.3
CDE01G0428 Ceratophyllum demersum HOM05D004364 ORTHO05D006299 0.0e+00 1154.0 824 68.9
Lsat_1_v5_gn_0_5341 Lactuca sativa HOM05D004364 ORTHO05D006299 0.0e+00 1142.5 784 70.8
RhsimUnG0257500 Rhododendron simsii HOM05D004364 ORTHO05D006299 0.0e+00 1138.3 961 61.7
Nitab4.5_0000092g0270 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1136.3 806 69.4
Mapoly0028s0083 Marchantia polymorpha HOM05D004364 ORTHO05D006299 0.0e+00 1096.6 810 65.2
Nitab4.5_0000297g0190 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1091.3 807 67.9
Pp3c19_17130 Physcomitrium patens HOM05D004364 ORTHO05D006299 5.5e-312 1074.7 817 63.6
Manes.15G081800 Manihot esculenta HOM05D004364 ORTHO05D006299 2.2e-311 1072.0 810 67.8
Dinv22351 Davidia involucrata HOM05D004364 ORTHO05D006299 1.3e-290 1003.0 605 78.7
SMO347G0465 Selaginella moellendorffii HOM05D004364 ORTHO05D006299 1.7e-282 976.1 802 59.1
unitig_21.g20140 Utricularia gibba HOM05D004364 ORTHO05D006299 5.0e-279 964.5 805 60.6
TAR624G0100 Trochodendron aralioides HOM05D004364 ORTHO05D006299 5.0e-247 858.2 783 59.3
VMungo1127G0244 Vigna mungo HOM05D004364 ORTHO05D006299 2.7e-216 756.1 381 96.6
PRCOL_00003961 Prasinoderma coloniale HOM05D004364 ORTHO05D006299 2.6e-187 659.8 856 43.9
Haze_26164 Corylus avellana HOM05D004364 ORTHO05D006299 5.2e-167 592.4 834 41.1
Nitab4.5_0001252g0070 Nicotiana tabacum HOM05D004364 ORTHO05D006299 7.2e-161 572.0 806 43.3
Cre02.g080350 Chlamydomonas reinhardtii HOM05D004364 ORTHO05D006299 5.7e-150 535.8 941 34.9
MCO15G328 Micromonas commoda HOM05D004364 ORTHO05D006299 5.9e-147 525.8 848 38.0
Lj1g0005584 Lotus japonicus HOM05D004364 ORTHO05D006299 3.0e-130 470.3 354 71.8
CBR_g17932 Chara braunii HOM05D004364 ORTHO05D006299 6.2e-120 436.0 469 50.1
SHI10080 Sapria himalayana HOM05D004364 ORTHO05D006299 2.0e-118 431.0 319 64.9
TAR624G1198 Trochodendron aralioides HOM05D004364 ORTHO05D006299 3.4e-110 403.7 247 74.1
arahy.Tifrunner.gnm1.ann1.CZGD0C Arachis hypogaea HOM05D004364 ORTHO05D006299 7.4e-97 359.4 238 75.6
Peaxi162Scf00177g00118 Petunia axillaris HOM05D004364 ORTHO05D006299 7.4e-73 279.6 196 69.4
Actinidia35287 Actinidia chinensis HOM05D004364 ORTHO05D006299 2.3e-66 258.1 172 73.3
TPR.G1046 Trifolium pratense HOM05D004364 ORTHO05D019261 1.1e-57 229.2 192 66.1
Sed0014921 Sechium edule HOM05D004364 ORTHO05D006299 1.5e-57 228.8 337 42.4
GSVIVG01015715001 Vitis vinifera HOM05D004364 ORTHO05D019261 1.2e-49 202.6 141 75.9
Lj1g0002875 Lotus japonicus HOM05D004364 ORTHO05D236196 5.2e-42 177.2 270 44.1
Medtr8g464880 Medicago truncatula HOM05D004364 ORTHO05D019261 4.1e-39 167.5 120 70.8
Rhsim03G0198500 Rhododendron simsii HOM05D004364 ORTHO05D006299 1.2e-38 166.0 90 81.1
SEGI_32785 Sequoiadendron giganteum HOM05D004364 ORTHO05D014012 3.6e-35 154.5 108 62.0
GSVIVG01014461001 Vitis vinifera HOM05D004364 ORTHO05D006299 3.6e-35 154.5 103 71.8
GSVIVG01015714001 Vitis vinifera HOM05D004364 ORTHO05D019261 4.4e-33 147.5 94 78.7
DCAR_027147 Daucus carota HOM05D004364 ORTHO05D006299 1.7e-32 145.6 104 66.3
GSVIVG01014462001 Vitis vinifera HOM05D004364 ORTHO05D019261 5.6e-28 130.6 80 81.2
Pp3c21_16740 Physcomitrium patens HOM05D004364 ORTHO05D006299 3.6e-27 127.9 190 43.2
MD15G1178100 Malus domestica HOM05D004364 ORTHO05D246722 4.7e-27 127.5 181 44.2
SEGI_31233 Sequoiadendron giganteum HOM05D004364 ORTHO05D019261 8.0e-27 126.7 119 57.1
CBR_g76006 Chara braunii HOM05D004364 ORTHO05D006299 1.5e-25 122.5 109 50.5
Medtr4g077475 Medicago truncatula HOM05D004364 ORTHO05D006299 7.0e-23 113.6 259 32.0
Lj8A161G44 Lonicera japonica HOM05D004364 ORTHO05D006299 3.5e-22 111.3 184 39.7
SHI10079 Sapria himalayana HOM05D004364 ORTHO05D006299 1.0e-21 109.8 109 53.2
Sabra16G0271600 Salix brachista HOM05D004364 ORTHO05D006299 1.3e-21 109.4 69 79.7
GSVIVG01015716001 Vitis vinifera HOM05D004364 ORTHO05D439286 1.2e-19 102.8 59 83.1
GSVIVG01014463001 Vitis vinifera HOM05D004364 ORTHO05D441130 3.1e-18 98.2 68 69.1
TAR624G0891 Trochodendron aralioides HOM05D000008 ORTHO05D000005 2.0e-17 95.5 131 46.6
Nn8g40041 Nelumbo nucifera HOM05D004364 ORTHO05D006299 4.4e-17 94.4 50 84.0
TAR011G0002 Trochodendron aralioides HOM05D004364 ORTHO05D019261 1.4e-15 89.4 157 43.9
Nn6g32117 Nelumbo nucifera HOM05D004364 ORTHO05D006299 1.6e-14 85.9 43 81.4
Lj1g0025632 Lotus japonicus HOM05D004364 ORTHO05D006299 1.3e-13 82.8 137 40.1
Nn6g32116 Nelumbo nucifera HOM05D004364 ORTHO05D014012 1.5e-12 79.3 51 74.5
MD15G1178000 Malus domestica HOM05D004364 ORTHO05D006299 6.8e-10 70.5 58 53.4
Gohir.D05G357560 Gossypium hirsutum HOM05D004364 ORTHO05D017991 3.4e-09 68.2 57 63.2
Gohir.D10G199250 Gossypium hirsutum HOM05D004364 ORTHO05D017991 5.8e-09 67.4 57 63.2
Gohir.D11G177550 Gossypium hirsutum HOM05D004364 ORTHO05D017991 5.8e-09 67.4 57 63.2
Lj8A161T45 Lonicera japonica HOM05D004364 ORTHO05D019261 1.7e-08 65.9 69 60.9
Sed0011564 Sechium edule HOM05D000344 ORTHO05D003478 1.7e-08 65.9 441 21.1
Gorai.002G149500 Gossypium raimondii HOM05D003868 ORTHO05D017991 2.2e-08 65.5 57 59.6
Gohir.D05G317650 Gossypium hirsutum HOM05D003868 ORTHO05D017991 2.9e-08 65.1 54 64.8
Gohir.A09G086698 Gossypium hirsutum HOM05D003868 ORTHO05D017991 8.4e-08 63.5 54 63.0
Gohir.D03G046101 Gossypium hirsutum HOM05D003868 ORTHO05D017991 8.4e-08 63.5 54 63.0
Gohir.D05G358720 Gossypium hirsutum HOM05D003868 ORTHO05D017991 8.4e-08 63.5 54 63.0
Gohir.D13G088850 Gossypium hirsutum HOM05D003868 ORTHO05D017991 8.4e-08 63.5 54 63.0
Nn8g40042 Nelumbo nucifera HOM05D004364 ORTHO05D006299 5.4e-07 60.8 34 79.4
BcaC02g07665 Brassica carinata HOM05D001091 ORTHO05D001020 7.8e-06 57.0 307 23.5


User provided reference genes

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