Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G052800 Phaseolus vulgaris HOM05D005584 ORTHO05D006809 4.4e-121 438.0 221 100.0
VMungo1127G1231 Vigna mungo HOM05D005584 ORTHO05D006809 1.7e-96 356.3 196 89.8
Ca_28318_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 1.1e-90 337.0 223 77.6
Medtr5g077780 Medicago truncatula HOM05D005584 ORTHO05D006809 5.3e-90 334.7 223 75.8
Lalb_Chr12g0210051 Lupinus albus HOM05D005584 ORTHO05D006809 1.9e-87 326.2 230 74.3
Lj1g0002439 Lotus japonicus HOM05D005584 ORTHO05D006809 3.2e-87 325.5 223 74.4
Lj3g0022996 Lotus japonicus HOM05D005584 ORTHO05D006809 1.2e-86 323.6 223 74.4
arahy.Tifrunner.gnm1.ann1.0L0HR0 Arachis hypogaea HOM05D005584 ORTHO05D006809 3.6e-86 322.0 231 73.6
arahy.Tifrunner.gnm1.ann1.5FW2L6 Arachis hypogaea HOM05D005584 ORTHO05D006809 3.6e-86 322.0 231 73.6
Psat2g045680 Pisum sativum HOM05D005584 ORTHO05D006809 3.6e-86 322.0 223 75.8
Glyma.12G050500 Glycine max HOM05D005584 ORTHO05D006809 2.2e-83 312.8 178 86.5
COL.COLO4_24203 Corchorus olitorius HOM05D005584 ORTHO05D006809 8.8e-77 290.8 229 66.8
Thecc.02G253500 Theobroma cacao HOM05D005584 ORTHO05D006809 1.5e-76 290.0 229 67.2
Gohir.A01G162200 Gossypium hirsutum HOM05D005584 ORTHO05D006809 5.7e-76 288.1 229 66.8
Duzib251G0376 Durio zibethinus HOM05D005584 ORTHO05D006809 7.4e-76 287.7 229 66.4
Atru.chr11.2060 Acer truncatum HOM05D005584 ORTHO05D006809 1.3e-75 287.0 229 64.6
RcHm_v2.0_Chr5g0041131 Rosa chinensis HOM05D005584 ORTHO05D006809 1.7e-75 286.6 231 66.7
PGR142G0158 Punica granatum HOM05D005584 ORTHO05D006809 6.3e-75 284.6 229 65.9
Gohir.D08G021700 Gossypium hirsutum HOM05D005584 ORTHO05D006809 1.4e-74 283.5 229 66.4
TWI18G1102 Tripterygium wilfordii HOM05D005584 ORTHO05D006809 1.4e-74 283.5 231 66.2
MD11G1211500 Malus domestica HOM05D005584 ORTHO05D006809 3.1e-74 282.3 231 64.1
CiPaw.05G185800 Carya illinoinensis HOM05D005584 ORTHO05D006809 6.9e-74 281.2 231 68.0
Manes.12G026800 Manihot esculenta HOM05D005584 ORTHO05D006809 6.9e-74 281.2 231 64.1
Gohir.D05G347832 Gossypium hirsutum HOM05D005584 ORTHO05D006809 2.0e-73 279.6 229 65.5
QL03p059496 Quercus lobata HOM05D005584 ORTHO05D006809 3.4e-73 278.9 234 63.7
Haze_12208 Corylus avellana HOM05D005584 ORTHO05D006809 1.0e-72 277.3 222 67.1
Eucgr.K03598 Eucalyptus grandis HOM05D005584 ORTHO05D006809 1.0e-72 277.3 228 63.6
Gohir.D01G149500 Gossypium hirsutum HOM05D005584 ORTHO05D006809 1.0e-72 277.3 229 65.1
Ciclev10032655m.g Citrus clementina HOM05D005584 ORTHO05D006809 1.3e-72 276.9 231 65.4
Potri.009G167600 Populus trichocarpa HOM05D005584 ORTHO05D006809 1.3e-72 276.9 234 65.0
FvH4_3g23340 Fragaria vesca HOM05D005584 ORTHO05D006809 1.7e-72 276.6 231 64.1
Prupe.4G221000 Prunus persica HOM05D005584 ORTHO05D006809 2.2e-72 276.2 231 64.5
FAN16G0047 Fragaria x ananassa HOM05D005584 ORTHO05D006809 3.8e-72 275.4 231 64.9
FAN21G3548 Fragaria x ananassa HOM05D005584 ORTHO05D006809 8.5e-72 274.2 233 64.8
FAN25G2737 Fragaria x ananassa HOM05D005584 ORTHO05D006809 2.5e-71 272.7 231 64.9
Sabra09G0130200 Salix brachista HOM05D005584 ORTHO05D006809 2.5e-71 272.7 234 64.1
GSVIVG01013774001 Vitis vinifera HOM05D005584 ORTHO05D006809 5.5e-71 271.6 231 61.0
TAR374G1289 Trochodendron aralioides HOM05D005584 ORTHO05D006809 7.2e-71 271.2 236 62.3
CsaV3_2G024710 Cucumis sativus L. HOM05D005584 ORTHO05D006809 9.4e-71 270.8 227 63.0
Cpa.g.sc69.68 Carica papaya HOM05D005584 ORTHO05D006809 1.2e-70 270.4 236 61.0
Oeu056410.1 Olea europaea HOM05D005584 ORTHO05D006809 1.6e-70 270.0 222 62.6
Hma1.2p1_0587F.1_g184080 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 2.1e-70 269.6 231 63.2
CANSAT56G2850 Cannabis sativa HOM05D005584 ORTHO05D006809 6.1e-70 268.1 235 60.9
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 3.9e-69 265.4 222 65.3
CSS0030415 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 6.7e-69 264.6 226 61.5
Aqoxy3G01083 Aquilegia oxysepala HOM05D005584 ORTHO05D006809 1.5e-68 263.5 224 62.9
AL4G22490 Arabidopsis lyrata HOM05D005584 ORTHO05D006809 2.6e-68 262.7 228 60.1
Carub.0004s0855 Capsella rubella HOM05D005584 ORTHO05D006809 2.6e-68 262.7 227 60.4
Migut.E00177 Erythranthe guttata HOM05D005584 ORTHO05D006809 2.6e-68 262.7 232 60.3
MSTRG.2403 Avicennia marina HOM05D005584 ORTHO05D006809 3.3e-68 262.3 226 60.2
CSS0021029 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 2.2e-67 259.6 221 61.5
Sopen08g021760 Solanum pennellii HOM05D005584 ORTHO05D006809 2.8e-67 259.2 236 60.6
Sed0009924 Sechium edule HOM05D005584 ORTHO05D006809 4.8e-67 258.5 227 59.9
Dinv15274 Davidia involucrata HOM05D001482 ORTHO05D001499 1.8e-66 256.5 236 60.6
AUR62014068 Chenopodium quinoa HOM05D005584 ORTHO05D006809 2.4e-66 256.1 235 56.6
PGSC0003DMG400033619 Solanum tuberosum HOM05D005584 ORTHO05D006809 2.4e-66 256.1 236 59.3
PSO017G5970 Papaver somniferum HOM05D005584 ORTHO05D006809 3.1e-66 255.8 230 60.0
Solyc08g067820.3 Solanum lycopersicum HOM05D005584 ORTHO05D006809 3.1e-66 255.8 236 59.7
vmacro01156 Vaccinium macrocarpon HOM05D005584 ORTHO05D006809 7.0e-66 254.6 227 58.6
MBI10_g28000_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 9.1e-66 254.2 221 62.0
FAN11G0752 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.6e-65 253.4 205 64.4
Nn4g22723 Nelumbo nucifera HOM05D005584 ORTHO05D006809 1.6e-65 253.4 233 59.2
Nn2g14080 Nelumbo nucifera HOM05D005584 ORTHO05D006809 2.6e-65 252.7 233 58.8
Thhalv10017205m.g Eutrema salsugineum HOM05D005584 ORTHO05D006809 3.5e-65 252.3 231 58.0
Cfa009174 Carpinus fangiana HOM05D005584 ORTHO05D006809 7.7e-65 251.1 203 64.5
BcaC02g10906 Brassica carinata HOM05D005584 ORTHO05D006809 1.3e-64 250.4 231 57.1
CARHR120490 Cardamine hirsuta HOM05D005584 ORTHO05D006809 2.9e-64 249.2 227 58.1
C04p23810 Brassica napus HOM05D005584 ORTHO05D006809 3.8e-64 248.8 231 56.7
ECA233G2638 Erigeron canadensis HOM05D005584 ORTHO05D006809 3.8e-64 248.8 227 58.6
PSO478G2901 Papaver somniferum HOM05D005584 ORTHO05D006809 3.8e-64 248.8 233 59.2
BraA07t29554Z Brassica rapa HOM05D005584 ORTHO05D006809 5.0e-64 248.4 231 56.7
Actinidia08155 Actinidia chinensis HOM05D005584 ORTHO05D006809 8.5e-64 247.7 235 57.9
BolC4t23879H Brassica oleracea HOM05D005584 ORTHO05D006809 1.9e-63 246.5 231 56.3
Cc08_g15830 Coffea canephora HOM05D005584 ORTHO05D006809 2.5e-63 246.1 221 57.5
A07p18380 Brassica napus HOM05D005584 ORTHO05D006809 3.2e-63 245.7 232 56.9
Sp4g10620 Schrenkiella parvula HOM05D005584 ORTHO05D006809 3.2e-63 245.7 231 56.7
Rhsim12G0043700 Rhododendron simsii HOM05D005584 ORTHO05D006809 1.0e-61 240.7 234 55.6
unitig_62.g23668 Utricularia gibba HOM05D005584 ORTHO05D006809 4.0e-61 238.8 228 56.1
ClCG08G017930 Citrullus lanatus HOM05D005584 ORTHO05D006809 1.1e-60 237.3 208 61.1
BcaB02g10116 Brassica carinata HOM05D005584 ORTHO05D006809 1.5e-60 236.9 204 59.3
Lsat_1_v5_gn_9_120260 Lactuca sativa HOM05D005584 ORTHO05D006809 2.0e-60 236.5 236 54.7
Peaxi162Scf00105g01417 Petunia axillaris HOM05D005584 ORTHO05D006809 2.0e-60 236.5 224 56.7
Aa31LG5G8210 Aethionema arabicum HOM05D005584 ORTHO05D006809 2.2e-59 233.0 261 51.3
SGA_v2.0_scaffold57G20112 Striga asiatica HOM05D005584 ORTHO05D006809 8.2e-59 231.1 197 58.4
Hund25366 Selenicereus undatus HOM05D005584 ORTHO05D003410 1.1e-58 230.7 272 50.0
HanXRQChr12g0371541 Helianthus annuus HOM05D005584 ORTHO05D006809 3.1e-58 229.2 201 57.7
SalBow8G4058 Salvia bowleyana HOM05D005584 ORTHO05D006809 1.6e-57 226.9 222 57.2
HPP92_004538 Vanilla planifolia HOM05D005584 ORTHO05D006809 7.7e-57 224.6 209 57.9
Gorai.009G374800 Gossypium raimondii HOM05D005584 ORTHO05D006809 1.4e-53 213.8 229 56.3
AT5G27300 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 1.8e-53 213.4 214 53.7
Nitab4.5_0000125g0200 Nicotiana tabacum HOM05D005584 ORTHO05D006809 4.0e-53 212.2 157 66.2
TPR.G25316 Trifolium pratense HOM05D005584 ORTHO05D006809 6.8e-53 211.5 122 82.0
Zm00001eb209860 Zea mays HOM05D005584 ORTHO05D006809 8.8e-53 211.1 257 49.4
Gorai.002G185600 Gossypium raimondii HOM05D005584 ORTHO05D006809 7.5e-52 208.0 222 54.1
Nitab4.5_0006579g0040 Nicotiana tabacum HOM05D005584 ORTHO05D006809 8.3e-51 204.5 183 58.5
EL10Ac6g13701 Beta vulgaris HOM05D005584 ORTHO05D006809 1.4e-50 203.8 235 50.6
CDE06G1284 Ceratophyllum demersum HOM05D005584 ORTHO05D006809 7.0e-50 201.4 228 49.6
SGA_v2.0_scaffold74G24685 Striga asiatica HOM05D005584 ORTHO05D006809 3.5e-49 199.1 194 53.1
AUR62005408 Chenopodium quinoa HOM05D005584 ORTHO05D006809 7.7e-49 198.0 235 48.9
Lj6A807T86 Lonicera japonica HOM05D005584 ORTHO05D006809 7.7e-49 198.0 234 50.9
Lsat_1_v5_gn_8_155560 Lactuca sativa HOM05D005584 ORTHO05D006809 1.9e-47 193.4 200 53.5
ATR1091G072 Amborella trichopoda HOM05D005584 ORTHO05D006809 3.2e-47 192.6 206 51.0
Potri.006G221301 Populus trichocarpa HOM05D005584 ORTHO05D006809 2.6e-44 183.0 223 51.1
BcaB06g28170 Brassica carinata HOM05D005584 ORTHO05D006809 2.2e-43 179.9 119 67.2
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 8.3e-43 177.9 101 76.2
MELO3C010671.2 Cucumis melo HOM05D005584 ORTHO05D006809 1.1e-42 177.6 223 48.9
Eucgr.D00612 Eucalyptus grandis HOM05D005584 ORTHO05D006809 1.8e-42 176.8 144 61.1
Hma1.2p1_0223F.1_g094390 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 3.5e-41 172.6 179 58.7
SEGI_24248 Sequoiadendron giganteum HOM05D005584 ORTHO05D006809 7.7e-41 171.4 254 42.5
Dinv24830 Davidia involucrata HOM05D005584 ORTHO05D006809 5.0e-40 168.7 179 58.7
Ah.02g130030 Amaranthus hybridus HOM05D005584 ORTHO05D006809 4.7e-38 162.2 183 52.5
Sc11g0001080 Simmondsia chinensis HOM05D005584 ORTHO05D006809 6.1e-38 161.8 181 52.5
Gorai.001G098200 Gossypium raimondii HOM05D005584 ORTHO05D006809 8.0e-38 161.4 212 45.3
Mapoly0029s0094 Marchantia polymorpha HOM05D005584 ORTHO05D006809 8.0e-38 161.4 262 40.1
Pp3c16_13430 Physcomitrium patens HOM05D005584 ORTHO05D006809 2.3e-37 159.8 257 41.2
DCAR_026533 Daucus carota HOM05D005584 ORTHO05D006809 1.5e-36 157.1 174 55.2
AT2G27790 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 1.8e-34 150.2 190 46.3
CAN.G21.11 Capsicum annuum HOM05D005584 ORTHO05D006809 1.2e-25 120.9 78 74.4
SHI17678 Sapria himalayana HOM05D005584 ORTHO05D006809 8.6e-24 114.8 70 78.6
QL01p007518 Quercus lobata HOM05D005584 ORTHO05D006809 3.3e-23 112.8 168 42.9
COL.COLO4_24201 Corchorus olitorius HOM05D005584 ORTHO05D006809 2.8e-22 109.8 57 80.7
Hund18879 Selenicereus undatus HOM05D005584 ORTHO05D006809 3.1e-21 106.3 127 48.8
Ca_05838_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 3.7e-19 99.4 49 91.8
SMO361G0752 Selaginella moellendorffii HOM05D005584 ORTHO05D006809 1.9e-18 97.1 67 58.2
CAN.G414.8 Capsicum annuum HOM05D000928 ORTHO05D001186 8.6e-16 88.2 50 70.0
CBR_g19306 Chara braunii HOM05D005584 ORTHO05D006809 1.6e-14 84.0 77 53.2
BcaB05g23234 Brassica carinata HOM05D005584 ORTHO05D006809 6.8e-13 78.6 64 59.4
MBI02_g20871_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 1.5e-12 77.4 48 77.1
MBI02_g44783_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 1.5e-12 77.4 48 77.1
MBI02_g25373_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 4.4e-12 75.9 48 75.0
Os02g0105000 Oryza sativa ssp. japonica HOM05D005584 ORTHO05D006809 1.7e-11 73.9 58 63.8
MBI12_g21981_MAGBIO Magnolia biondii HOM05D001465 ORTHO05D001434 3.8e-11 72.8 89 49.4
MBI14_g03623_MAGBIO Magnolia biondii HOM05D000013 ORTHO05D006809 4.9e-11 72.4 48 70.8
Gorai.004G016800 Gossypium raimondii HOM05D005584 ORTHO05D006809 1.9e-10 70.5 68 58.8
Glyma.11G125900 Glycine max HOM05D005584 ORTHO05D006809 4.1e-10 69.3 31 96.8
MBI14_g10639_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 5.4e-10 68.9 43 74.4
MBI19_g26621_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 2.7e-09 66.6 43 72.1
MBI03_g02127_MAGBIO Magnolia biondii HOM05D002786 ORTHO05D006809 4.7e-06 55.8 42 61.9


User provided reference genes

Program Settings