Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G153800 Phaseolus vulgaris HOM05D004152 ORTHO05D004878 2.7e-138 495.4 253 100.0
VMungo0331G1163 Vigna mungo HOM05D004152 ORTHO05D004878 6.6e-121 437.6 254 90.2
Glyma.08G210500 Glycine max HOM05D004152 ORTHO05D004878 2.8e-111 405.6 251 84.5
Glyma.07G032200 Glycine max HOM05D004152 ORTHO05D004878 4.0e-110 401.7 251 84.9
Psat7g255640 Pisum sativum HOM05D004152 ORTHO05D004878 7.4e-96 354.4 254 73.6
Lj3g0007947 Lotus japonicus HOM05D004152 ORTHO05D004878 8.2e-95 350.9 257 73.2
Haze_18794 Corylus avellana HOM05D004152 ORTHO05D004878 3.4e-93 345.5 243 75.7
Medtr4g011180 Medicago truncatula HOM05D004152 ORTHO05D004878 5.9e-93 344.7 251 71.7
Gohir.A04G110300 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.0e-92 344.0 228 77.2
Lalb_Chr25g0279491 Lupinus albus HOM05D004152 ORTHO05D004878 2.2e-92 342.8 221 77.4
Gorai.012G137200 Gossypium raimondii HOM05D004152 ORTHO05D004878 2.9e-92 342.4 228 77.2
Ca_20428_v3 Cicer arietinum L. HOM05D004152 ORTHO05D004878 5.0e-92 341.7 257 70.0
ClCG01G004210 Citrullus lanatus HOM05D004152 ORTHO05D004878 5.0e-92 341.7 232 76.3
MD04G1062100 Malus domestica HOM05D004152 ORTHO05D004878 5.0e-92 341.7 230 75.7
arahy.Tifrunner.gnm1.ann1.HAI1EF Arachis hypogaea HOM05D004152 ORTHO05D004878 1.1e-91 340.5 255 71.0
Gohir.D04G150500 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.1e-91 340.5 228 76.8
Gohir.D04G150600 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.1e-91 340.5 228 76.8
MD06G1055800 Malus domestica HOM05D004152 ORTHO05D004878 4.2e-91 338.6 252 71.4
Thecc.02G150400 Theobroma cacao HOM05D004152 ORTHO05D004878 9.3e-91 337.4 224 75.9
Duzib052G0353 Durio zibethinus HOM05D004152 ORTHO05D004878 2.1e-90 336.3 213 78.4
CANSAT21G2552 Cannabis sativa HOM05D004152 ORTHO05D004878 2.7e-90 335.9 260 70.8
Lj2C222T2 Lonicera japonica HOM05D004152 ORTHO05D004878 2.7e-90 335.9 205 80.5
FAN18G1702 Fragaria x ananassa HOM05D004152 ORTHO05D004878 4.6e-90 335.1 247 69.2
Cfa019694 Carpinus fangiana HOM05D004152 ORTHO05D004878 6.1e-90 334.7 241 72.2
QL12p011587 Quercus lobata HOM05D004152 ORTHO05D004878 6.1e-90 334.7 262 67.6
COL.COLO4_08312 Corchorus olitorius HOM05D004152 ORTHO05D004878 1.0e-89 334.0 222 75.2
Potri.003G107800 Populus trichocarpa HOM05D004152 ORTHO05D004878 1.0e-89 334.0 223 74.4
Sabra03G0074600 Salix brachista HOM05D004152 ORTHO05D004878 1.3e-89 333.6 225 75.1
FAN13G0727 Fragaria x ananassa HOM05D004152 ORTHO05D004878 1.8e-89 333.2 253 70.0
CiPaw.16G091100 Carya illinoinensis HOM05D004152 ORTHO05D004878 3.0e-89 332.4 233 74.2
Ciclev10021871m.g Citrus clementina HOM05D004152 ORTHO05D004878 3.9e-89 332.0 201 80.6
FAN08G2273 Fragaria x ananassa HOM05D004152 ORTHO05D004878 3.9e-89 332.0 256 69.1
SGA_v2.0_scaffold104G30172 Striga asiatica HOM05D004152 ORTHO05D004878 3.9e-89 332.0 268 69.0
Prupe.5G066300 Prunus persica HOM05D004152 ORTHO05D004878 5.1e-89 331.6 244 69.7
Nitab4.5_0000618g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.1e-88 330.5 238 72.3
MSTRG.12117 Avicennia marina HOM05D004152 ORTHO05D004878 1.5e-88 330.1 213 79.8
Gorai.005G214700 Gossypium raimondii HOM05D004152 ORTHO05D004878 2.5e-88 329.3 246 70.3
arahy.Tifrunner.gnm1.ann1.Y2K32V Arachis hypogaea HOM05D004152 ORTHO05D004878 3.3e-88 328.9 256 67.2
SalBow6G1227 Salvia bowleyana HOM05D004152 ORTHO05D004878 3.3e-88 328.9 187 86.1
FAN04G2897 Fragaria x ananassa HOM05D004152 ORTHO05D004878 4.3e-88 328.6 253 67.6
Manes.01G082700 Manihot esculenta HOM05D004152 ORTHO05D004878 5.7e-88 328.2 249 69.5
Cpa.g.sc29.188 Carica papaya HOM05D004152 ORTHO05D004878 7.4e-88 327.8 247 70.4
Solyc06g060790.1 Solanum lycopersicum HOM05D004152 ORTHO05D004878 9.7e-88 327.4 253 68.8
Nitab4.5_0002881g0050 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.3e-87 327.0 238 71.4
Migut.A01125 Erythranthe guttata HOM05D004152 ORTHO05D004878 1.6e-87 326.6 181 88.4
Sopen06g020930 Solanum pennellii HOM05D004152 ORTHO05D004878 2.2e-87 326.2 253 67.2
unitig_899.g15440 Utricularia gibba HOM05D004152 ORTHO05D004878 2.8e-87 325.9 194 82.5
FvH4_5g19250 Fragaria vesca HOM05D004152 ORTHO05D004878 3.7e-87 325.5 192 82.8
Gohir.D02G191900 Gossypium hirsutum HOM05D004152 ORTHO05D004878 4.8e-87 325.1 188 84.6
PGSC0003DMG400024154 Solanum tuberosum HOM05D004152 ORTHO05D004878 4.8e-87 325.1 206 77.7
TWI81G0703 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 8.2e-87 324.3 246 69.9
PGR031G2826 Punica granatum HOM05D004152 ORTHO05D004878 1.8e-86 323.2 261 66.3
Aqoxy7G00850 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 2.4e-86 322.8 258 68.6
A03p23950 Brassica napus HOM05D004152 ORTHO05D004878 2.4e-86 322.8 217 75.6
MELO3C005518.2 Cucumis melo HOM05D004152 ORTHO05D004878 2.4e-86 322.8 252 68.3
Aqoxy7G00694 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 3.1e-86 322.4 210 74.8
TWI60G0584 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 4.1e-86 322.0 248 67.3
Atru.chr9.1286 Acer truncatum HOM05D004152 ORTHO05D004878 5.3e-86 321.6 249 67.9
BraA03t11610Z Brassica rapa HOM05D004152 ORTHO05D004878 5.3e-86 321.6 217 75.6
TAR629G1833 Trochodendron aralioides HOM05D004152 ORTHO05D004878 6.9e-86 321.2 208 76.0
CsaV3_5G004400 Cucumis sativus L. HOM05D004152 ORTHO05D004878 9.1e-86 320.9 253 68.0
HanXRQChr13g0417841 Helianthus annuus HOM05D004152 ORTHO05D004878 9.1e-86 320.9 220 74.5
Oeu040710.1 Olea europaea HOM05D004152 ORTHO05D004878 1.5e-85 320.1 217 75.6
CSS0047405 Camellia sinensis var. sinensis HOM05D004152 ORTHO05D004878 2.0e-85 319.7 181 84.0
DCAR_002274 Daucus carota HOM05D004152 ORTHO05D004878 2.6e-85 319.3 252 67.1
Rhsim07G0110300 Rhododendron simsii HOM05D004152 ORTHO05D004878 2.6e-85 319.3 230 74.3
THA.LOC104824129 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 2.6e-85 319.3 192 82.8
C03p28570 Brassica napus HOM05D004152 ORTHO05D004878 4.5e-85 318.5 204 77.0
DCAR_008502 Daucus carota HOM05D004152 ORTHO05D004878 7.7e-85 317.8 226 69.5
BcaC02g12415 Brassica carinata HOM05D004152 ORTHO05D004878 1.0e-84 317.4 248 68.1
BolC3t15222H Brassica oleracea HOM05D004152 ORTHO05D004878 1.0e-84 317.4 220 72.7
EL10Ac5g12362 Beta vulgaris HOM05D004152 ORTHO05D004878 1.3e-84 317.0 240 66.7
BolC4t22054H Brassica oleracea HOM05D004152 ORTHO05D004878 2.2e-84 316.2 248 68.1
Sed0004379 Sechium edule HOM05D004152 ORTHO05D004878 2.2e-84 316.2 257 66.1
Sc10g0005540 Simmondsia chinensis HOM05D004152 ORTHO05D004878 2.2e-84 316.2 249 67.9
HanXRQChr03g0088791 Helianthus annuus HOM05D004152 ORTHO05D004878 2.9e-84 315.8 218 73.9
BraA05t19344Z Brassica rapa HOM05D004152 ORTHO05D004878 5.0e-84 315.1 239 68.2
Carub.0004s2557 Capsella rubella HOM05D004152 ORTHO05D004878 5.0e-84 315.1 190 79.5
BcaNung03538 Brassica carinata HOM05D004152 ORTHO05D004878 6.5e-84 314.7 222 71.6
Thhalv10017142m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 6.5e-84 314.7 253 66.0
CARHR138160 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.1e-83 313.9 190 78.9
AT2G43090 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 1.9e-83 313.2 190 80.0
AL4G41740 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 7.2e-83 311.2 250 66.0
Sp4g25220 Schrenkiella parvula HOM05D004152 ORTHO05D004878 7.2e-83 311.2 190 78.9
AUR62007107 Chenopodium quinoa HOM05D004152 ORTHO05D004878 9.4e-83 310.8 252 65.9
AUR62019969 Chenopodium quinoa HOM05D004152 ORTHO05D004878 1.6e-82 310.1 205 75.1
CAN.G62.23 Capsicum annuum HOM05D004152 ORTHO05D004878 3.6e-82 308.9 185 82.2
BcaB01g01073 Brassica carinata HOM05D004152 ORTHO05D004878 7.9e-82 307.8 204 75.0
Nn6g33894 Nelumbo nucifera HOM05D004152 ORTHO05D004878 2.3e-81 306.2 258 64.7
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 3.0e-81 305.8 208 72.6
PSO210G0624 Papaver somniferum HOM05D004152 ORTHO05D004878 3.0e-81 305.8 259 62.9
Ah.12g054170 Amaranthus hybridus HOM05D004152 ORTHO05D004878 1.5e-80 303.5 243 67.1
CARHR169410 Cardamine hirsuta HOM05D004152 ORTHO05D004878 2.0e-80 303.1 255 65.5
PSO210G4930 Papaver somniferum HOM05D004152 ORTHO05D004878 9.7e-80 300.8 253 63.6
Peaxi162Scf01022g00023 Petunia axillaris HOM05D004152 ORTHO05D004878 1.7e-79 300.1 229 67.7
ECA240G2077 Erigeron canadensis HOM05D004152 ORTHO05D004878 2.2e-79 299.7 215 70.7
Actinidia10839 Actinidia chinensis HOM05D004152 ORTHO05D004878 8.2e-79 297.7 198 76.8
THA.LOC104803472 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 3.1e-78 295.8 247 64.0
CARHR169370 Cardamine hirsuta HOM05D004152 ORTHO05D004878 9.1e-78 294.3 225 67.6
CDE11G0751 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 1.2e-77 293.9 227 67.4
Hund14573 Selenicereus undatus HOM05D004152 ORTHO05D004878 7.7e-77 291.2 193 73.6
Aa31LG10G13480 Aethionema arabicum HOM05D004152 ORTHO05D004878 1.0e-76 290.8 226 69.5
Aa31LG1G24900 Aethionema arabicum HOM05D004152 ORTHO05D004878 1.4e-75 287.0 184 76.6
SEGI_19785 Sequoiadendron giganteum HOM05D004152 ORTHO05D004878 2.5e-75 286.2 242 62.8
Lj8A264G55 Lonicera japonica HOM05D004152 ORTHO05D004878 5.5e-75 285.0 170 82.9
Carub.0002s0595 Capsella rubella HOM05D004152 ORTHO05D004878 1.0e-73 280.8 193 72.0
Os02g0655300 Oryza sativa ssp. japonica HOM05D004152 ORTHO05D004878 2.3e-73 279.6 183 75.4
Zm00001eb249330 Zea mays HOM05D004152 ORTHO05D004878 2.3e-73 279.6 183 75.4
AL5G40810 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 3.0e-73 279.3 197 71.6
AT3G58990 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 3.0e-73 279.3 197 71.6
Carub.0005s2573 Capsella rubella HOM05D004152 ORTHO05D004878 3.0e-73 279.3 181 74.0
Lsat_1_v5_gn_6_92521 Lactuca sativa HOM05D004152 ORTHO05D004878 3.0e-73 279.3 246 61.8
Mapoly0001s0104 Marchantia polymorpha HOM05D004152 ORTHO05D004878 3.9e-73 278.9 190 71.1
ATR0693G400 Amborella trichopoda HOM05D004152 ORTHO05D004878 1.3e-71 273.9 178 77.0
Pp3c1_29090 Physcomitrium patens HOM05D004152 ORTHO05D004878 2.2e-71 273.1 176 73.3
SMO274G0039 Selaginella moellendorffii HOM05D004152 ORTHO05D004878 2.8e-71 272.7 185 69.7
Pp3c14_19120 Physcomitrium patens HOM05D004152 ORTHO05D004878 6.3e-71 271.6 204 64.2
CARHR138170 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.1e-70 270.8 250 59.6
AagrBONN_evm.TU.Sc2ySwM_228.3330 Anthoceros agrestis HOM05D004152 ORTHO05D004878 1.8e-70 270.0 190 68.9
Sp4g25230 Schrenkiella parvula HOM05D004152 ORTHO05D004878 9.1e-70 267.7 255 60.8
BcaC01g05264 Brassica carinata HOM05D004152 ORTHO05D004878 1.6e-69 266.9 218 65.1
BraA05t19345Z Brassica rapa HOM05D004152 ORTHO05D004878 4.5e-69 265.4 256 57.8
A05p03590 Brassica napus HOM05D004152 ORTHO05D004878 7.7e-69 264.6 256 57.8
AT2G43100 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 1.0e-68 264.2 197 68.0
AL4G41750 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 1.3e-68 263.8 256 59.0
Aa31LG1G24910 Aethionema arabicum HOM05D004152 ORTHO05D004878 5.0e-68 261.9 224 61.2
BcaC02g12414 Brassica carinata HOM05D004152 ORTHO05D004878 6.5e-68 261.5 226 62.4
Thhalv10017125m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 6.5e-68 261.5 254 57.9
BcaNung03539 Brassica carinata HOM05D004152 ORTHO05D004878 1.1e-67 260.8 252 57.1
C04p04150 Brassica napus HOM05D004152 ORTHO05D004878 1.1e-67 260.8 226 61.9
BolC4t22055H Brassica oleracea HOM05D004152 ORTHO05D004878 1.1e-67 260.8 226 61.9
Carub.0004s2558 Capsella rubella HOM05D004152 ORTHO05D004878 2.1e-66 256.5 256 56.6
Cre06.g252650 Chlamydomonas reinhardtii HOM05D004152 ORTHO05D004878 1.8e-65 253.4 188 66.0
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 4.4e-64 248.8 189 66.7
Dinv39162 Davidia involucrata HOM05D004152 ORTHO05D004878 1.3e-63 247.3 153 79.1
CDE11G0227 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 4.8e-63 245.4 150 78.7
Gohir.A03G168700 Gossypium hirsutum HOM05D004152 ORTHO05D004878 8.2e-63 244.6 249 57.0
SHI09309 Sapria himalayana HOM05D004152 ORTHO05D004878 5.7e-56 221.9 133 79.7
Cc08_g12220 Coffea canephora HOM05D004152 ORTHO05D004878 7.5e-56 221.5 174 66.7
SalBow1G7183 Salvia bowleyana HOM05D004152 ORTHO05D004878 1.6e-53 213.8 206 59.7
HPP92_020921 Vanilla planifolia HOM05D004152 ORTHO05D004878 5.9e-53 211.8 217 54.8
Actinidia31515 Actinidia chinensis HOM05D004152 ORTHO05D004878 2.3e-52 209.9 172 67.4
Dinv21650 Davidia involucrata HOM05D004152 ORTHO05D004878 8.6e-52 208.0 121 83.5
Nitab4.5_0002372g0010 Nicotiana tabacum HOM05D004152 ORTHO05D004878 6.1e-50 201.8 119 83.2
Lj8A267T12 Lonicera japonica HOM05D004152 ORTHO05D004878 1.0e-49 201.1 205 57.6
Lj8A266T18 Lonicera japonica HOM05D004152 ORTHO05D004878 1.8e-46 190.3 205 56.6
EL10Ac5g12363 Beta vulgaris HOM05D004152 ORTHO05D004878 9.2e-46 188.0 216 48.6
TPR.G10893 Trifolium pratense HOM05D004152 ORTHO05D004878 5.9e-45 185.3 127 74.8
Oeu047732.1 Olea europaea HOM05D004152 ORTHO05D004878 1.0e-44 184.5 255 48.2
Carub.0005s2576 Capsella rubella HOM05D004152 ORTHO05D004878 1.3e-44 184.1 163 60.1
Ah.12g054180 Amaranthus hybridus HOM05D004152 ORTHO05D004878 1.5e-43 180.6 200 48.5
Rhsim05G0121600 Rhododendron simsii HOM05D004152 ORTHO05D004878 1.5e-43 180.6 165 62.4
Sed0021243 Sechium edule HOM05D004152 ORTHO05D004878 3.3e-43 179.5 150 67.3
BcaB05g25308 Brassica carinata HOM05D004152 ORTHO05D004878 8.9e-33 144.8 165 53.9
Lsat_1_v5_gn_7_1160 Lactuca sativa HOM05D004152 ORTHO05D004878 1.6e-29 134.0 76 80.3
SalBow1G0783 Salvia bowleyana HOM05D001430 ORTHO05D004878 3.0e-28 129.8 103 63.1
C04p04140 Brassica napus HOM05D000373 ORTHO05D007048 3.9e-28 129.4 76 80.3
A05p03570 Brassica napus HOM05D000373 ORTHO05D007048 4.3e-27 125.9 76 77.6
Lsat_1_v5_gn_5_55401 Lactuca sativa HOM05D004152 ORTHO05D004878 7.5e-24 115.2 85 65.9
ATR0693G063 Amborella trichopoda HOM05D004152 ORTHO05D004878 1.4e-22 110.9 125 51.2
AUR62007106 Chenopodium quinoa HOM05D004152 ORTHO05D004878 6.0e-21 105.5 112 51.8
Rhsim03G0103100 Rhododendron simsii HOM05D004152 ORTHO05D004878 1.5e-19 100.9 88 61.4
COL.COLO4_34273 Corchorus olitorius HOM05D004152 ORTHO05D004878 2.4e-14 83.6 154 39.0
GSVIVG01007403001 Vitis vinifera HOM05D004152 ORTHO05D004878 7.1e-14 82.0 201 35.3
Ah.14g083550 Amaranthus hybridus HOM05D004152 ORTHO05D004878 4.6e-13 79.3 50 78.0
Cfa024802 Carpinus fangiana HOM05D003112 ORTHO05D003660 2.4e-09 67.0 133 36.1
PRCOL_00005264 Prasinoderma coloniale HOM05D003112 ORTHO05D003660 2.4e-09 67.0 149 32.2
MCO01G562 Micromonas commoda HOM05D003112 ORTHO05D003660 6.9e-09 65.5 151 33.1
CsaV3_5G004360 Cucumis sativus L. HOM05D004152 ORTHO05D004878 4.4e-08 62.8 54 59.3
C03p28580 Brassica napus HOM05D004152 ORTHO05D004878 9.9e-08 61.6 103 35.9
BcaB01g00650 Brassica carinata HOM05D004152 ORTHO05D004878 1.7e-07 60.8 54 53.7
A03p23960 Brassica napus HOM05D004152 ORTHO05D004878 2.2e-07 60.5 54 59.3
Cfa023744 Carpinus fangiana HOM05D003112 ORTHO05D003660 1.9e-06 57.4 177 28.8


User provided reference genes

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