Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G024866 Phaseolus vulgaris HOM05D006375 ORTHO05D008188 0.0e+00 1307.4 689 100.0
Phvul.008G233100 Phaseolus vulgaris HOM05D006375 ORTHO05D008188 0.0e+00 1300.4 688 99.6
VMungo0647G2002 Vigna mungo HOM05D006375 ORTHO05D008188 0.0e+00 1180.2 694 87.8
Glyma.14G214000 Glycine max HOM05D006375 ORTHO05D008188 0.0e+00 1092.0 693 81.4
TPR.G8261 Trifolium pratense HOM05D006375 ORTHO05D008188 2.3e-285 985.3 698 73.6
LjContig00141g0022245 Lotus japonicus HOM05D006375 ORTHO05D008188 1.3e-283 979.5 693 74.3
Lalb_Chr04g0251361 Lupinus albus HOM05D006375 ORTHO05D008188 1.0e-280 969.9 692 74.1
Medtr5g078360 Medicago truncatula HOM05D006375 ORTHO05D008188 2.0e-273 945.7 697 73.0
Psat2g047400 Pisum sativum HOM05D006375 ORTHO05D008188 3.2e-266 921.8 697 71.3
arahy.Tifrunner.gnm1.ann1.WVM8AG Arachis hypogaea HOM05D006375 ORTHO05D008188 1.9e-263 912.5 703 70.7
arahy.Tifrunner.gnm1.ann1.EH3TRU Arachis hypogaea HOM05D006375 ORTHO05D008188 2.1e-262 909.1 717 69.0
QL02p058134 Quercus lobata HOM05D006375 ORTHO05D008188 2.5e-223 779.2 741 58.7
QL93p0100_0515 Quercus lobata HOM05D006375 ORTHO05D008188 9.6e-223 777.3 741 58.6
Cfa007814 Carpinus fangiana HOM05D006375 ORTHO05D008188 6.2e-222 774.6 746 57.1
Haze_14261 Corylus avellana HOM05D006375 ORTHO05D008188 1.8e-213 746.5 798 53.5
Potri.004G087400 Populus trichocarpa HOM05D006375 ORTHO05D008188 4.6e-209 731.9 723 58.4
Thecc.04G114800 Theobroma cacao HOM05D006375 ORTHO05D008188 1.5e-207 726.9 751 55.7
Ciclev10010990m.g Citrus clementina HOM05D006375 ORTHO05D008188 3.1e-205 719.2 720 57.4
RcHm_v2.0_Chr3g0493161 Rosa chinensis HOM05D006375 ORTHO05D008188 4.1e-205 718.8 723 54.8
Cpa.g.sc116.55 Carica papaya HOM05D006375 ORTHO05D008188 1.5e-204 716.8 710 57.2
Prupe.3G161000 Prunus persica HOM05D006375 ORTHO05D008188 1.5e-204 716.8 681 57.9
Sabra04G0058300 Salix brachista HOM05D006375 ORTHO05D008188 5.9e-204 714.9 690 59.6
Manes.01G118300 Manihot esculenta HOM05D006375 ORTHO05D008188 4.6e-201 705.3 689 57.2
CANSAT64G0280 Cannabis sativa HOM05D006375 ORTHO05D008188 1.4e-200 703.7 733 54.6
MD17G1258300 Malus domestica HOM05D006375 ORTHO05D008188 3.0e-200 702.6 688 57.6
Gohir.A07G078100 Gossypium hirsutum HOM05D006375 ORTHO05D008188 3.3e-199 699.1 728 55.9
Lj4C263T11 Lonicera japonica HOM05D006375 ORTHO05D008188 2.2e-198 696.4 726 54.8
Atru.chr1.1908 Acer truncatum HOM05D006375 ORTHO05D008188 8.2e-198 694.5 704 57.2
Gorai.001G088500 Gossypium raimondii HOM05D006375 ORTHO05D008188 3.1e-197 692.6 727 56.5
Gohir.D07G082900 Gossypium hirsutum HOM05D006375 ORTHO05D008188 9.1e-197 691.0 727 56.4
CSS0034734 Camellia sinensis var. sinensis HOM05D006375 ORTHO05D008188 3.4e-196 689.1 747 52.9
Hma1.2p1_0158F.1_g070200 Hydrangea macrophylla HOM05D006375 ORTHO05D008188 4.5e-196 688.7 716 54.6
MELO3C022863.2 Cucumis melo HOM05D006375 ORTHO05D008188 3.2e-194 682.6 754 52.0
Sed0006511 Sechium edule HOM05D006375 ORTHO05D008188 5.5e-194 681.8 743 51.8
CSS0009955 Camellia sinensis var. sinensis HOM05D006375 ORTHO05D008188 6.7e-192 674.9 721 53.5
Rhsim10G0177200 Rhododendron simsii HOM05D006375 ORTHO05D008188 1.5e-191 673.7 732 53.3
CsaV3_5G024160 Cucumis sativus L. HOM05D006375 ORTHO05D008188 7.4e-191 671.4 734 52.3
Nitab4.5_0000201g0170 Nicotiana tabacum HOM05D006375 ORTHO05D008188 1.1e-189 667.5 687 54.7
COL.COLO4_05994 Corchorus olitorius HOM05D006375 ORTHO05D008188 3.1e-189 666.0 749 52.3
TAR374G0480 Trochodendron aralioides HOM05D006375 ORTHO05D008188 7.0e-189 664.8 734 53.3
Actinidia06495 Actinidia chinensis HOM05D006375 ORTHO05D008188 4.5e-188 662.1 746 51.7
FvH4_1g28770 Fragaria vesca HOM05D006375 ORTHO05D008188 1.0e-187 661.0 724 52.6
DCAR_003431 Daucus carota HOM05D006375 ORTHO05D008188 2.9e-187 659.4 709 53.9
Nitab4.5_0010112g0040 Nicotiana tabacum HOM05D006375 ORTHO05D008188 5.0e-187 658.7 711 52.7
GSVIVG01030782001 Vitis vinifera HOM05D006375 ORTHO05D008188 6.5e-187 658.3 693 53.4
PGSC0003DMG400015671 Solanum tuberosum HOM05D006375 ORTHO05D008188 7.2e-186 654.8 691 54.8
SGA_v2.0_scaffold2G00936 Striga asiatica HOM05D006375 ORTHO05D008188 9.4e-186 654.4 706 52.8
Solyc11g011150.2 Solanum lycopersicum HOM05D006375 ORTHO05D008188 2.3e-184 649.8 692 54.0
Sopen11g005910 Solanum pennellii HOM05D006375 ORTHO05D008188 2.3e-184 649.8 689 54.1
MSTRG.2615 Avicennia marina HOM05D006375 ORTHO05D008188 6.7e-184 648.3 722 52.2
Hund04476 Selenicereus undatus HOM05D006375 ORTHO05D008188 6.7e-184 648.3 738 51.6
HanXRQChr14g0444701 Helianthus annuus HOM05D006375 ORTHO05D008188 8.8e-184 647.9 709 52.5
FAN19G0463 Fragaria x ananassa HOM05D006375 ORTHO05D008188 1.5e-183 647.1 735 51.4
EL10Ac6g15274 Beta vulgaris HOM05D006375 ORTHO05D008188 2.0e-183 646.7 732 52.0
Nn3g18305 Nelumbo nucifera HOM05D006375 ORTHO05D008188 5.7e-183 645.2 725 52.3
PGR004G2253 Punica granatum HOM05D006375 ORTHO05D008188 1.3e-182 644.0 692 52.7
ECA238G1164 Erigeron canadensis HOM05D006375 ORTHO05D008188 3.1e-181 639.4 688 53.3
TWI53G2003 Tripterygium wilfordii HOM05D006375 ORTHO05D008188 5.3e-181 638.6 699 53.6
FAN23G0218 Fragaria x ananassa HOM05D006375 ORTHO05D008188 1.6e-180 637.1 758 49.9
AUR62003604 Chenopodium quinoa HOM05D006375 ORTHO05D008188 1.3e-179 634.0 711 52.5
Sc14g0006560 Simmondsia chinensis HOM05D006375 ORTHO05D008188 2.9e-179 632.9 740 50.7
THA.LOC104827188 Tarenaya hassleriana HOM05D006375 ORTHO05D008188 2.5e-178 629.8 713 52.0
ClCG01G008800 Citrullus lanatus HOM05D006375 ORTHO05D008188 1.6e-177 627.1 739 50.1
AUR62017915 Chenopodium quinoa HOM05D006375 ORTHO05D008188 2.7e-177 626.3 695 52.5
SalBow3G0693 Salvia bowleyana HOM05D006375 ORTHO05D008188 4.7e-177 625.5 743 49.3
Ah.02g121850 Amaranthus hybridus HOM05D006375 ORTHO05D008188 1.4e-176 624.0 731 50.3
Cc07_g13460 Coffea canephora HOM05D006375 ORTHO05D008188 5.2e-176 622.1 689 53.4
AL6G27600 Arabidopsis lyrata HOM05D006375 ORTHO05D008188 1.2e-175 620.9 689 52.8
TWI74G0084 Tripterygium wilfordii HOM05D006375 ORTHO05D008188 1.5e-175 620.5 699 52.6
PSO017G5819 Papaver somniferum HOM05D006375 ORTHO05D008188 3.4e-175 619.4 741 50.5
Aqoxy3G00081 Aquilegia oxysepala HOM05D006375 ORTHO05D008188 2.8e-174 616.3 690 51.6
AT5G16630 Arabidopsis thaliana HOM05D006375 ORTHO05D008188 3.7e-174 615.9 689 53.3
Thhalv10012651m.g Eutrema salsugineum HOM05D006375 ORTHO05D008188 4.8e-174 615.5 693 53.0
PSO478G2715 Papaver somniferum HOM05D006375 ORTHO05D008188 4.1e-173 612.5 740 49.2
CiPaw.03G071800 Carya illinoinensis HOM05D006375 ORTHO05D008188 9.1e-173 611.3 741 49.4
BcaC03g18507 Brassica carinata HOM05D006375 ORTHO05D008188 2.0e-172 610.1 694 50.9
C02p08510 Brassica napus HOM05D006375 ORTHO05D008188 2.7e-172 609.8 693 50.8
CAN.G222.25 Capsicum annuum HOM05D006375 ORTHO05D008188 2.7e-172 609.8 734 49.6
Carub.0006s1484 Capsella rubella HOM05D006375 ORTHO05D008188 1.9e-170 603.6 685 52.8
Peaxi162Scf00305g00616 Petunia axillaris HOM05D006375 ORTHO05D008188 1.9e-170 603.6 694 50.7
Eucgr.F02852 Eucalyptus grandis HOM05D006375 ORTHO05D008188 1.2e-169 600.9 656 52.6
Lsat_1_v5_gn_2_69340 Lactuca sativa HOM05D006375 ORTHO05D008188 4.7e-169 599.0 686 52.6
CARHR196570 Cardamine hirsuta HOM05D006375 ORTHO05D008188 2.3e-168 596.7 700 52.1
Migut.H02262 Erythranthe guttata HOM05D006375 ORTHO05D008188 3.4e-167 592.8 609 55.5
Sp6g27540 Schrenkiella parvula HOM05D006375 ORTHO05D008188 3.4e-167 592.8 708 50.4
BraA02t05338Z Brassica rapa HOM05D006375 ORTHO05D008188 1.7e-166 590.5 695 49.2
A02p03690 Brassica napus HOM05D006375 ORTHO05D008188 1.8e-165 587.0 695 48.9
vmacro07694 Vaccinium macrocarpon HOM05D006375 ORTHO05D008188 4.1e-165 585.9 743 48.3
Aa31LG11G13020 Aethionema arabicum HOM05D006375 ORTHO05D008188 2.0e-164 583.6 726 47.9
Hma1.2p1_0158F.1_g070190 Hydrangea macrophylla HOM05D006375 ORTHO05D008188 2.8e-161 573.2 601 55.1
BolC2t06767H Brassica oleracea HOM05D006375 ORTHO05D000255 1.8e-160 570.5 698 48.9
MBI19_g34823_MAGBIO Magnolia biondii HOM05D006375 ORTHO05D008188 3.4e-159 566.2 619 51.2
ATR0564G422 Amborella trichopoda HOM05D006375 ORTHO05D008188 7.5e-159 565.1 758 45.4
CDE05G1980 Ceratophyllum demersum HOM05D006375 ORTHO05D008188 2.9e-158 563.1 721 46.7
SHI25352 Sapria himalayana HOM05D006375 ORTHO05D008188 3.5e-156 556.2 643 49.6
unitig_899.g14571 Utricularia gibba HOM05D006375 ORTHO05D008188 5.9e-156 555.4 696 46.4
Os08g0427500 Oryza sativa ssp. japonica HOM05D006375 ORTHO05D008188 2.6e-151 540.0 692 47.5
Zm00001eb041880 Zea mays HOM05D006375 ORTHO05D008188 1.7e-150 537.3 693 46.6
HPP92_024778 Vanilla planifolia HOM05D006375 ORTHO05D008188 2.4e-149 533.5 736 45.0
Ca_22495_v3 Cicer arietinum L. HOM05D006375 ORTHO05D008188 1.4e-141 507.7 413 66.3
SEGI_37856 Sequoiadendron giganteum HOM05D006375 ORTHO05D008188 7.1e-133 478.8 779 41.7
FAN26G3226 Fragaria x ananassa HOM05D006375 ORTHO05D008188 1.3e-123 448.0 485 51.1
Dinv28205 Davidia involucrata HOM05D006375 ORTHO05D008188 5.6e-122 442.6 611 46.2
Pp3c22_7360 Physcomitrium patens HOM05D006375 ORTHO05D008188 3.6e-121 439.9 491 46.8
SMO139G0070 Selaginella moellendorffii HOM05D006375 ORTHO05D008188 3.9e-115 419.9 697 38.5
SMO157G0011 Selaginella moellendorffii HOM05D006375 ORTHO05D008188 1.4e-112 411.4 703 38.0
Mapoly0069s0010 Marchantia polymorpha HOM05D006375 ORTHO05D008188 4.6e-108 396.4 836 33.7
AagrBONN_evm.TU.Sc2ySwM_340.97 Anthoceros agrestis HOM05D006375 ORTHO05D008188 7.6e-103 379.0 708 36.2
CBR_g3816 Chara braunii HOM05D006375 ORTHO05D008188 6.5e-86 322.8 581 34.3
Ca_22493_v3 Cicer arietinum L. HOM05D006375 ORTHO05D008188 7.2e-77 292.7 205 73.7
PRCOL_00001710 Prasinoderma coloniale HOM05D006375 ORTHO05D008188 1.2e-50 205.7 519 28.5
Haze_27154 Corylus avellana HOM05D006375 ORTHO05D008188 5.0e-46 190.3 375 33.6
MCO12G035 Micromonas commoda HOM05D006375 ORTHO05D008188 3.3e-45 187.6 414 29.2
Nn2g13217 Nelumbo nucifera HOM05D006375 ORTHO05D008188 3.3e-29 134.4 128 55.5
Cfa025272 Carpinus fangiana HOM05D006375 ORTHO05D008188 2.0e-26 125.2 435 25.1
Cre12.g557400 Chlamydomonas reinhardtii HOM05D006375 ORTHO05D008188 1.3e-25 122.5 311 30.5
Cfa024716 Carpinus fangiana HOM05D006375 ORTHO05D008188 1.2e-12 79.3 510 20.8
COL.COLO4_05996 Corchorus olitorius HOM05D006375 ORTHO05D000012 9.0e-11 73.2 109 43.1


User provided reference genes

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