Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G256100 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 9.5e-67 256.5 115 100.0
Glyma.09G037400 Glycine max HOM05D004365 ORTHO05D005123 1.5e-64 249.2 115 95.7
Haze_01277 Corylus avellana HOM05D004365 ORTHO05D005123 2.0e-64 248.8 115 96.5
Ca_01870_v3 Cicer arietinum L. HOM05D004365 ORTHO05D005123 2.6e-64 248.4 115 95.7
Lj6g0010863 Lotus japonicus HOM05D004365 ORTHO05D005123 3.4e-64 248.1 115 95.7
QL06p011635 Quercus lobata HOM05D004365 ORTHO05D005123 3.4e-64 248.1 114 96.5
GSVIVG01035016001 Vitis vinifera HOM05D004365 ORTHO05D005123 3.4e-64 248.1 115 96.5
Sed0006030 Sechium edule HOM05D004365 ORTHO05D005123 4.4e-64 247.7 115 95.7
PGR004G2507 Punica granatum HOM05D004365 ORTHO05D005123 5.8e-64 247.3 115 96.5
CANSAT54G2312 Cannabis sativa HOM05D004365 ORTHO05D005123 7.6e-64 246.9 115 95.7
CiPaw.01G139700 Carya illinoinensis HOM05D004365 ORTHO05D005123 1.3e-63 246.1 115 94.8
Lalb_Chr18g0058831 Lupinus albus HOM05D004365 ORTHO05D005123 1.3e-63 246.1 115 94.8
Medtr2g034520 Medicago truncatula HOM05D004365 ORTHO05D005123 1.3e-63 246.1 115 94.8
RcHm_v2.0_Chr4g0424591 Rosa chinensis HOM05D004365 ORTHO05D005123 1.3e-63 246.1 115 94.8
ClCG05G006460 Citrullus lanatus HOM05D004365 ORTHO05D005123 1.7e-63 245.7 115 94.8
Sed0001961 Sechium edule HOM05D004365 ORTHO05D005123 1.7e-63 245.7 115 94.8
Nn4g25611 Nelumbo nucifera HOM05D004365 ORTHO05D005123 2.2e-63 245.4 115 94.8
Psat6g078760 Pisum sativum HOM05D004365 ORTHO05D005123 2.9e-63 245.0 115 94.8
Ah.13g072000 Amaranthus hybridus HOM05D004365 ORTHO05D005123 3.7e-63 244.6 115 93.9
ECA246G3323 Erigeron canadensis HOM05D004365 ORTHO05D005123 3.7e-63 244.6 115 94.8
Glyma.15G142700 Glycine max HOM05D004365 ORTHO05D005123 4.9e-63 244.2 115 93.9
Hma1.2p1_0013F.1_g008720 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 4.9e-63 244.2 115 93.9
TPR.G5757 Trifolium pratense HOM05D004365 ORTHO05D005123 8.4e-63 243.4 115 93.9
HanXRQChr05g0145921 Helianthus annuus HOM05D004365 ORTHO05D005123 1.1e-62 243.0 115 93.9
MSTRG.21775 Avicennia marina HOM05D004365 ORTHO05D005123 1.4e-62 242.7 115 93.9
SMO174G0170 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 1.9e-62 242.3 114 93.0
TAR365G0998 Trochodendron aralioides HOM05D004365 ORTHO05D005123 1.9e-62 242.3 115 92.2
Actinidia13364 Actinidia chinensis HOM05D004365 ORTHO05D005123 2.4e-62 241.9 115 93.9
Lsat_1_v5_gn_6_116841 Lactuca sativa HOM05D004365 ORTHO05D005123 2.4e-62 241.9 115 92.2
Aqoxy2G02775 Aquilegia oxysepala HOM05D004365 ORTHO05D005123 3.2e-62 241.5 115 93.0
CSS0008168 Camellia sinensis var. sinensis HOM05D004365 ORTHO05D005123 4.1e-62 241.1 115 93.0
Sc05g0009630 Simmondsia chinensis HOM05D004365 ORTHO05D005123 4.1e-62 241.1 115 92.2
FvH4_4g19480 Fragaria vesca HOM05D004365 ORTHO05D005123 5.4e-62 240.7 115 92.2
FAN07G2773 Fragaria x ananassa HOM05D004365 ORTHO05D005123 5.4e-62 240.7 115 92.2
Eucgr.H02666 Eucalyptus grandis HOM05D004365 ORTHO05D005123 7.1e-62 240.4 115 93.0
Prupe.1G122000 Prunus persica HOM05D004365 ORTHO05D005123 7.1e-62 240.4 115 91.3
Ciclev10006256m.g Citrus clementina HOM05D004365 ORTHO05D005123 9.2e-62 240.0 115 91.3
Cc03_g00970 Coffea canephora HOM05D004365 ORTHO05D005123 1.6e-61 239.2 115 93.0
Oeu016485.1 Olea europaea HOM05D004365 ORTHO05D005123 2.1e-61 238.8 115 91.3
TWI73G0828 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 2.1e-61 238.8 115 91.3
DCAR_023347 Daucus carota HOM05D004365 ORTHO05D005123 2.7e-61 238.4 115 91.3
unitig_22.g6354 Utricularia gibba HOM05D004365 ORTHO05D005123 3.5e-61 238.0 115 93.0
PSO761G0124 Papaver somniferum HOM05D004365 ORTHO05D005123 4.6e-61 237.7 115 90.4
Nitab4.5_0000647g0090 Nicotiana tabacum HOM05D004365 ORTHO05D005123 7.8e-61 236.9 115 91.3
Peaxi162Scf00164g01133 Petunia axillaris HOM05D004365 ORTHO05D005123 7.8e-61 236.9 115 91.3
SMO364G0316 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 7.8e-61 236.9 115 89.6
Solyc05g053430.3 Solanum lycopersicum HOM05D004365 ORTHO05D005123 7.8e-61 236.9 115 91.3
Sopen05g031930 Solanum pennellii HOM05D004365 ORTHO05D005123 7.8e-61 236.9 115 91.3
PGSC0003DMG400027213 Solanum tuberosum HOM05D004365 ORTHO05D005123 7.8e-61 236.9 115 91.3
Thecc.04G297700 Theobroma cacao HOM05D004365 ORTHO05D005123 1.0e-60 236.5 115 90.4
CDE02G0371 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 1.3e-60 236.1 115 89.6
CDE09G0896 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 1.7e-60 235.7 115 88.7
PSO210G6722 Papaver somniferum HOM05D004365 ORTHO05D005123 1.7e-60 235.7 115 89.6
Gohir.A01G034300 Gossypium hirsutum HOM05D004365 ORTHO05D005123 2.3e-60 235.3 115 89.6
Gohir.D01G023535 Gossypium hirsutum HOM05D004365 ORTHO05D005123 2.3e-60 235.3 115 89.6
Gorai.002G030000 Gossypium raimondii HOM05D004365 ORTHO05D005123 2.3e-60 235.3 115 89.6
Cpa.g.sc9.86 Carica papaya HOM05D004365 ORTHO05D005123 3.0e-60 235.0 115 88.7
Duzib212G0477 Durio zibethinus HOM05D004365 ORTHO05D005123 3.0e-60 235.0 115 89.6
Aa31LG8G4020 Aethionema arabicum HOM05D004365 ORTHO05D005123 3.9e-60 234.6 115 87.8
Duzib052G0793 Durio zibethinus HOM05D004365 ORTHO05D005123 3.9e-60 234.6 115 89.6
Manes.15G005400 Manihot esculenta HOM05D004365 ORTHO05D005123 3.9e-60 234.6 115 89.6
SEGI_37796 Sequoiadendron giganteum HOM05D004365 ORTHO05D005123 3.9e-60 234.6 115 88.7
MD16G1157100 Malus domestica HOM05D004365 ORTHO05D005123 6.6e-60 233.8 115 88.7
HPP92_002026 Vanilla planifolia HOM05D004365 ORTHO05D005123 1.1e-59 233.0 115 89.6
Pp3c18_17910 Physcomitrium patens HOM05D004365 ORTHO05D005123 1.9e-59 232.3 115 87.8
Potri.008G106900 Populus trichocarpa HOM05D004365 ORTHO05D005123 1.9e-59 232.3 115 88.7
Dinv44302 Davidia involucrata HOM05D004365 ORTHO05D005123 2.5e-59 231.9 115 89.6
MD13G1156200 Malus domestica HOM05D004365 ORTHO05D005123 2.5e-59 231.9 115 87.0
AL3G29960 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 3.3e-59 231.5 115 87.0
AT3G16980 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 4.3e-59 231.1 115 87.0
Mapoly0028s0097 Marchantia polymorpha HOM05D004365 ORTHO05D005123 4.3e-59 231.1 115 88.7
Carub.0003s1673 Capsella rubella HOM05D004365 ORTHO05D005123 5.6e-59 230.7 115 87.0
Thhalv10021989m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 5.6e-59 230.7 115 86.1
Sabra10G0110500 Salix brachista HOM05D004365 ORTHO05D005123 5.6e-59 230.7 115 88.7
Sabra08G0080800 Salix brachista HOM05D004365 ORTHO05D005123 7.3e-59 230.3 115 87.8
THA.LOC104820300 Tarenaya hassleriana HOM05D004365 ORTHO05D005123 7.3e-59 230.3 115 86.1
vmacro15189 Vaccinium macrocarpon HOM05D004365 ORTHO05D005123 9.6e-59 229.9 135 80.0
CARHR092230 Cardamine hirsuta HOM05D004365 ORTHO05D005123 1.6e-58 229.2 115 86.1
BcaC09g50324 Brassica carinata HOM05D004365 ORTHO05D005123 2.1e-58 228.8 115 85.2
BcaNung00211 Brassica carinata HOM05D004365 ORTHO05D005123 2.1e-58 228.8 115 85.2
A01p21300 Brassica napus HOM05D004365 ORTHO05D005123 2.1e-58 228.8 115 85.2
BcaB08g34342 Brassica carinata HOM05D004365 ORTHO05D005123 3.6e-58 228.0 115 85.2
BcaC07g37975 Brassica carinata HOM05D004365 ORTHO05D005123 3.6e-58 228.0 115 85.2
A08p12300 Brassica napus HOM05D004365 ORTHO05D005123 3.6e-58 228.0 115 85.2
BolC8t48354H Brassica oleracea HOM05D004365 ORTHO05D005123 3.6e-58 228.0 115 85.2
arahy.Tifrunner.gnm1.ann1.79Y4XM Arachis hypogaea HOM05D004365 ORTHO05D005123 6.2e-58 227.3 112 91.1
arahy.Tifrunner.gnm1.ann1.C4ZZV2 Arachis hypogaea HOM05D004365 ORTHO05D005123 6.2e-58 227.3 112 91.1
AL7G38770 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 1.1e-57 226.5 115 84.3
AT4G16265 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 1.1e-57 226.5 115 84.3
Carub.0007s2525 Capsella rubella HOM05D004365 ORTHO05D005123 1.1e-57 226.5 115 84.3
Nitab4.5_0006365g0010 Nicotiana tabacum HOM05D004365 ORTHO05D005123 2.4e-57 225.3 134 78.4
Thhalv10026603m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 4.0e-57 224.6 115 83.5
TWI09G0163 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 8.9e-57 223.4 115 86.1
CARHR222650 Cardamine hirsuta HOM05D004365 ORTHO05D005123 2.0e-56 222.2 115 81.7
Zm00001eb088460 Zea mays HOM05D004365 ORTHO05D005123 4.4e-56 221.1 115 81.7
EL10Ac3g05464 Beta vulgaris HOM05D004365 ORTHO05D005123 5.8e-56 220.7 115 85.2
Migut.N00047 Erythranthe guttata HOM05D004365 ORTHO05D005123 3.8e-55 218.0 105 92.4
Hund03115 Selenicereus undatus HOM05D004365 ORTHO05D005123 3.8e-55 218.0 105 92.4
Hund11961 Selenicereus undatus HOM05D004365 ORTHO05D005123 2.4e-54 215.3 105 90.5
arahy.Tifrunner.gnm1.ann1.MX4EIU Arachis hypogaea HOM05D004365 ORTHO05D005123 7.1e-54 213.8 114 81.6
A09p28560 Brassica napus HOM05D004365 ORTHO05D005123 2.7e-53 211.8 113 78.8
BraA09t38417Z Brassica rapa HOM05D004365 ORTHO05D005123 2.7e-53 211.8 113 78.8
Os03g0102200 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 3.5e-53 211.5 115 78.3
SalBow2G2782 Salvia bowleyana HOM05D004365 ORTHO05D005123 7.8e-53 210.3 128 77.3
Lalb_Chr08g0234431 Lupinus albus HOM05D004365 ORTHO05D005123 2.3e-52 208.8 112 83.0
Os12g0560400 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 5.1e-52 207.6 105 87.6
BolC1t02605H Brassica oleracea HOM05D004365 ORTHO05D005123 1.5e-51 206.1 105 83.8
BraA08t33228Z Brassica rapa HOM05D004365 ORTHO05D005123 2.5e-51 205.3 105 83.8
Glyma.07G241200 Glycine max HOM05D004365 ORTHO05D005123 3.3e-51 204.9 115 74.8
TWI53G1753 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 4.3e-51 204.5 114 76.3
Manes.03G202800 Manihot esculenta HOM05D004365 ORTHO05D005123 7.3e-51 203.8 115 79.1
SpUn0413_0020 Schrenkiella parvula HOM05D004365 ORTHO05D005123 7.3e-51 203.8 105 82.9
BcaC04g21057 Brassica carinata HOM05D004365 ORTHO05D005123 9.6e-51 203.4 112 75.9
C09p36150 Brassica napus HOM05D004365 ORTHO05D005123 1.3e-50 203.0 112 75.9
BolC9t56454H Brassica oleracea HOM05D004365 ORTHO05D005123 1.3e-50 203.0 112 75.9
Dinv15193 Davidia involucrata HOM05D004365 ORTHO05D005123 1.1e-49 199.9 98 92.9
Lj4g0028172 Lotus japonicus HOM05D004365 ORTHO05D005123 1.1e-49 199.9 115 75.7
TWI53G0542 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 2.4e-49 198.7 114 74.6
Phvul.003G112600 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 5.3e-49 197.6 115 73.0
VMungo1309G0143 Vigna mungo HOM05D004365 ORTHO05D005123 9.9e-48 193.4 88 100.0
HPP92_005120 Vanilla planifolia HOM05D004365 ORTHO05D005123 3.8e-47 191.4 114 69.3
Sp7g14780 Schrenkiella parvula HOM05D004365 ORTHO05D005123 3.2e-46 188.3 130 66.2
VMungo1215G2752 Vigna mungo HOM05D004365 ORTHO05D005123 9.3e-46 186.8 115 69.6
Mapoly0087s0071 Marchantia polymorpha HOM05D004365 ORTHO05D005123 5.1e-44 181.0 115 67.8
ATR0665G356 Amborella trichopoda HOM05D004365 ORTHO05D005123 6.6e-44 180.6 88 92.0
DCAR_027008 Daucus carota HOM05D004365 ORTHO05D005123 8.7e-44 180.3 180 52.8
Sabra10G0110300 Salix brachista HOM05D004365 ORTHO05D005123 1.6e-42 176.0 115 72.2
TPR.G10905 Trifolium pratense HOM05D004365 ORTHO05D005123 4.8e-42 174.5 88 87.5
AUR62041403 Chenopodium quinoa HOM05D004365 ORTHO05D005123 6.2e-42 174.1 93 84.9
arahy.Tifrunner.gnm1.ann1.2XVX11 Arachis hypogaea HOM05D004365 ORTHO05D005123 1.4e-41 172.9 114 70.2
FAN12G3053 Fragaria x ananassa HOM05D004365 ORTHO05D005123 1.2e-40 169.9 80 93.8
AUR62016130 Chenopodium quinoa HOM05D004365 ORTHO05D005123 1.5e-40 169.5 80 93.8
Rhsim02G0004900 Rhododendron simsii HOM05D004365 ORTHO05D005123 3.4e-40 168.3 90 85.6
FvH4_3g15650 Fragaria vesca HOM05D004365 ORTHO05D005123 7.6e-40 167.2 80 91.2
SGA_v2.0_scaffold119G32662 Striga asiatica HOM05D004365 ORTHO05D005123 9.9e-40 166.8 84 90.5
Os07g0615800 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 2.2e-39 165.6 115 56.5
FAN12G1077 Fragaria x ananassa HOM05D004365 ORTHO05D005123 2.9e-39 165.2 82 89.0
Atru.chr4.3028 Acer truncatum HOM05D004365 ORTHO05D005123 9.3e-38 160.2 79 87.3
Eucgr.H02672 Eucalyptus grandis HOM05D004365 ORTHO05D005123 3.5e-37 158.3 84 85.7
BraA01t02037Z Brassica rapa HOM05D004365 ORTHO05D005123 6.0e-37 157.5 81 82.7
Potri.010G142500 Populus trichocarpa HOM05D004365 ORTHO05D005123 7.9e-37 157.1 94 76.6
Zm00001eb138580 Zea mays HOM05D004365 ORTHO05D005123 3.9e-36 154.8 81 81.5
BcaB04g18375 Brassica carinata HOM05D004365 ORTHO05D005123 6.7e-36 154.1 80 81.2
Zm00001eb086380 Zea mays HOM05D004365 ORTHO05D005123 3.3e-35 151.8 80 81.2
COL.COLO4_34649 Corchorus olitorius HOM05D001765 ORTHO05D005123 7.4e-35 150.6 77 88.3
Zm00001eb230190 Zea mays HOM05D004365 ORTHO05D005123 3.7e-34 148.3 81 80.2
Haze_26633 Corylus avellana HOM05D004365 ORTHO05D005123 3.8e-31 138.3 110 54.5
MCO01G087 Micromonas commoda HOM05D004365 ORTHO05D005123 4.2e-30 134.8 111 53.2
Zm00001eb270680 Zea mays HOM05D004365 ORTHO05D005123 2.4e-25 119.0 64 82.8
AL7G38230 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 5.9e-24 114.4 61 78.7
Hma1.2p1_0096F.1_g047650 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 8.4e-23 110.5 56 89.3
Zm00001eb327460 Zea mays HOM05D004365 ORTHO05D005123 1.4e-22 109.8 97 49.5
AagrBONN_evm.TU.Sc2ySwM_117.3306 Anthoceros agrestis HOM05D004365 ORTHO05D005123 5.5e-22 107.8 114 46.5
Cre12.g505750 Chlamydomonas reinhardtii HOM05D004365 ORTHO05D005123 9.3e-22 107.1 113 45.1
SHI00177 Sapria himalayana HOM05D004365 ORTHO05D005123 1.3e-20 103.2 71 63.4
Zm00001eb137030 Zea mays HOM05D004365 ORTHO05D005123 1.9e-19 99.4 54 83.3
PRCOL_00000204 Prasinoderma coloniale HOM05D004365 ORTHO05D005123 3.3e-19 98.6 113 45.1
BcaB01g01499 Brassica carinata HOM05D004365 ORTHO05D005123 1.6e-18 96.3 49 79.6
Hma1.2p1_0234F.1_g098400 Hydrangea macrophylla HOM05D001088 ORTHO05D005123 3.1e-17 92.0 54 79.6
Cfa024902 Carpinus fangiana HOM05D004365 ORTHO05D005123 4.1e-17 91.7 74 52.7
Mapoly0020s0069 Marchantia polymorpha HOM05D004365 ORTHO05D005123 5.0e-15 84.7 117 35.9
SMO304G0059 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 3.9e-12 75.1 105 37.1
AagrBONN_evm.TU.Sc2ySwM_344.170 Anthoceros agrestis HOM05D001942 ORTHO05D001996 5.1e-12 74.7 105 37.1
Os11g0676650 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 4.8e-10 68.2 40 75.0
AagrBONN_evm.TU.Sc2ySwM_117.3630 Anthoceros agrestis HOM05D006029 ORTHO05D007439 1.5e-08 63.2 112 33.9
Pp3c15_5550 Physcomitrium patens HOM05D006029 ORTHO05D007439 2.0e-08 62.8 112 32.1
PGR102G2016 Punica granatum HOM05D006029 ORTHO05D007439 3.4e-08 62.0 116 30.2
EL10Ac5g10924 Beta vulgaris HOM05D006029 ORTHO05D007439 1.7e-07 59.7 113 25.7
Mapoly0122s0031 Marchantia polymorpha HOM05D004365 ORTHO05D253640 2.9e-07 58.9 88 35.2
TAR374G1259 Trochodendron aralioides HOM05D006029 ORTHO05D007439 3.8e-07 58.5 112 28.6
Sc02g0002910 Simmondsia chinensis HOM05D006029 ORTHO05D007439 5.0e-07 58.2 115 27.0
Nn1g00349 Nelumbo nucifera HOM05D006029 ORTHO05D007439 1.4e-06 56.6 113 30.1
Hund17067 Selenicereus undatus HOM05D006029 ORTHO05D007439 2.5e-06 55.8 118 27.1
Ciclev10022957m.g Citrus clementina HOM05D006029 ORTHO05D007439 5.5e-06 54.7 119 29.4


User provided reference genes

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