Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G071700 Phaseolus vulgaris HOM05D006776 ORTHO05D007603 5.1e-265 917.1 448 100.0
VMungo1309G0963 Vigna mungo HOM05D006776 ORTHO05D007603 3.5e-242 841.3 451 92.2
Glyma.04G045700 Glycine max HOM05D006776 ORTHO05D007603 5.8e-229 797.3 451 88.0
Glyma.06G046400 Glycine max HOM05D006776 ORTHO05D007603 2.2e-228 795.4 450 87.8
Lj1g0026753 Lotus japonicus HOM05D006776 ORTHO05D007603 8.8e-217 756.9 447 83.0
Medtr3g103170 Medicago truncatula HOM05D006776 ORTHO05D007603 3.9e-209 731.5 446 80.7
Lalb_Chr11g0062871 Lupinus albus HOM05D006776 ORTHO05D007603 7.4e-208 727.2 446 80.3
TPR.G33723 Trifolium pratense HOM05D006776 ORTHO05D007603 1.7e-207 726.1 446 80.0
Psat5g038960 Pisum sativum HOM05D006776 ORTHO05D007603 2.4e-206 722.2 448 80.1
arahy.Tifrunner.gnm1.ann1.YEFH3D Arachis hypogaea HOM05D006776 ORTHO05D007603 1.9e-203 712.6 454 76.9
Ca_15900_v3 Cicer arietinum L. HOM05D006776 ORTHO05D007603 2.5e-203 712.2 448 79.2
arahy.Tifrunner.gnm1.ann1.SBJ000 Arachis hypogaea HOM05D006776 ORTHO05D007603 1.0e-201 706.8 451 76.5
MD15G1070100 Malus domestica HOM05D006776 ORTHO05D007603 7.2e-195 684.1 452 72.8
Manes.05G181900 Manihot esculenta HOM05D006776 ORTHO05D007603 5.2e-193 677.9 456 72.4
RcHm_v2.0_Chr6g0309581 Rosa chinensis HOM05D006776 ORTHO05D007603 8.8e-193 677.2 452 72.8
CANSAT21G2159 Cannabis sativa HOM05D006776 ORTHO05D007603 3.1e-190 668.7 452 72.3
Prupe.1G422900 Prunus persica HOM05D006776 ORTHO05D007603 4.1e-190 668.3 453 72.8
FvH4_2g33100 Fragaria vesca HOM05D006776 ORTHO05D007603 4.5e-189 664.8 452 71.7
FAN20G0940 Fragaria x ananassa HOM05D006776 ORTHO05D007603 4.5e-189 664.8 452 71.7
FAN15G0723 Fragaria x ananassa HOM05D006776 ORTHO05D007603 5.9e-189 664.5 452 71.7
CiPaw.07G175000 Carya illinoinensis HOM05D006776 ORTHO05D007603 1.0e-188 663.7 447 71.8
Atru.chr13.832 Acer truncatum HOM05D006776 ORTHO05D007603 1.7e-188 662.9 438 72.6
FAN24G3456 Fragaria x ananassa HOM05D006776 ORTHO05D007603 6.5e-188 661.0 452 71.0
FAN27G1522 Fragaria x ananassa HOM05D006776 ORTHO05D007603 6.5e-188 661.0 452 71.2
Ciclev10001152m.g Citrus clementina HOM05D006776 ORTHO05D007603 1.9e-187 659.4 449 71.7
Dinv39223 Davidia involucrata HOM05D006776 ORTHO05D007603 9.4e-187 657.1 461 70.3
CsaV3_2G026140 Cucumis sativus L. HOM05D006776 ORTHO05D007603 1.2e-186 656.8 452 70.4
CSS0038791 Camellia sinensis var. sinensis HOM05D006776 ORTHO05D007603 3.6e-186 655.2 456 69.7
Thecc.08G088800 Theobroma cacao HOM05D006776 ORTHO05D007603 4.7e-186 654.8 453 70.6
QL12p038088 Quercus lobata HOM05D006776 ORTHO05D007603 3.0e-185 652.1 487 66.7
COL.COLO4_28506 Corchorus olitorius HOM05D006776 ORTHO05D007603 4.0e-185 651.7 453 69.1
MELO3C010806.2 Cucumis melo HOM05D006776 ORTHO05D007603 2.0e-184 649.4 458 69.4
Potri.014G016100 Populus trichocarpa HOM05D006776 ORTHO05D007603 2.0e-184 649.4 453 70.2
Gohir.D05G213300 Gossypium hirsutum HOM05D006776 ORTHO05D007603 3.4e-184 648.7 453 70.2
Actinidia08248 Actinidia chinensis HOM05D006776 ORTHO05D007603 5.7e-184 647.9 461 68.1
EL10Ac1g02384 Beta vulgaris HOM05D006776 ORTHO05D007603 9.8e-184 647.1 460 68.9
Gohir.A05G210000 Gossypium hirsutum HOM05D006776 ORTHO05D007603 1.7e-183 646.4 453 69.8
Sed0026542 Sechium edule HOM05D006776 ORTHO05D007603 6.3e-183 644.4 433 71.1
ClCG08G016470 Citrullus lanatus HOM05D006776 ORTHO05D007603 8.3e-183 644.0 443 69.8
GSVIVG01009344001 Vitis vinifera HOM05D006776 ORTHO05D007603 8.3e-183 644.0 461 69.2
Cc10_g05780 Coffea canephora HOM05D006776 ORTHO05D007603 1.1e-182 643.7 460 69.1
Rhsim07G0219900 Rhododendron simsii HOM05D006776 ORTHO05D007603 2.4e-182 642.5 461 68.3
Cpa.g.sc142.25 Carica papaya HOM05D006776 ORTHO05D007603 9.1e-182 640.6 435 70.8
TAR376G1186 Trochodendron aralioides HOM05D006776 ORTHO05D007603 3.5e-181 638.6 459 68.8
Hund23872 Selenicereus undatus HOM05D006776 ORTHO05D007603 8.6e-180 634.0 459 67.8
Eucgr.F00083 Eucalyptus grandis HOM05D006776 ORTHO05D007603 5.5e-179 631.3 450 68.7
PGR083G0271 Punica granatum HOM05D006776 ORTHO05D007603 7.2e-179 630.9 450 69.6
Cfa013778 Carpinus fangiana HOM05D006776 ORTHO05D007603 1.2e-178 630.2 453 69.5
Hma1.2p1_0819F.1_g223710 Hydrangea macrophylla HOM05D006776 ORTHO05D007603 8.0e-178 627.5 434 70.7
ECA232G1156 Erigeron canadensis HOM05D006776 ORTHO05D007603 3.0e-177 625.5 454 67.2
PGSC0003DMG400011544 Solanum tuberosum HOM05D006776 ORTHO05D007603 8.9e-177 624.0 457 68.1
MSTRG.22221 Avicennia marina HOM05D006776 ORTHO05D007603 2.6e-176 622.5 455 66.2
Lsat_1_v5_gn_4_131640 Lactuca sativa HOM05D006776 ORTHO05D007603 1.7e-175 619.8 464 67.2
TWI56G0429 Tripterygium wilfordii HOM05D006776 ORTHO05D007603 2.8e-175 619.0 446 68.4
Migut.N02781 Erythranthe guttata HOM05D006776 ORTHO05D007603 8.3e-175 617.5 460 66.1
Aqoxy5G00870 Aquilegia oxysepala HOM05D006776 ORTHO05D007603 4.1e-174 615.1 457 67.2
Sabra14G0010000 Salix brachista HOM05D006776 ORTHO05D007603 4.1e-174 615.1 451 67.4
Ah.11g042830 Amaranthus hybridus HOM05D006776 ORTHO05D007603 5.4e-174 614.8 459 65.1
Sopen12g030330 Solanum pennellii HOM05D006776 ORTHO05D007603 7.0e-174 614.4 457 67.0
Solyc12g088340.2 Solanum lycopersicum HOM05D006776 ORTHO05D007603 1.2e-173 613.6 457 67.0
Nitab4.5_0008551g0030 Nicotiana tabacum HOM05D006776 ORTHO05D007603 1.6e-173 613.2 433 69.7
Nn1g04555 Nelumbo nucifera HOM05D006776 ORTHO05D007603 7.8e-173 610.9 458 65.9
PSO017G0681 Papaver somniferum HOM05D006776 ORTHO05D007603 1.0e-172 610.5 457 66.5
THA.LOC104814190 Tarenaya hassleriana HOM05D006776 ORTHO05D007603 1.3e-172 610.1 457 65.9
Oeu053611.1 Olea europaea HOM05D006776 ORTHO05D007603 1.7e-172 609.8 459 64.5
Nitab4.5_0002314g0100 Nicotiana tabacum HOM05D006776 ORTHO05D007603 2.3e-172 609.4 457 67.0
DCAR_012816 Daucus carota HOM05D006776 ORTHO05D007603 8.6e-172 607.4 452 65.9
PSO170G0170 Papaver somniferum HOM05D006776 ORTHO05D007603 1.5e-171 606.7 457 65.9
HanXRQChr09g0266761 Helianthus annuus HOM05D006776 ORTHO05D007603 1.9e-171 606.3 456 65.4
AL1G41330 Arabidopsis lyrata HOM05D006776 ORTHO05D007603 7.3e-171 604.4 453 64.7
Haze_22436 Corylus avellana HOM05D006776 ORTHO05D007603 7.3e-171 604.4 404 74.0
Gorai.009G219900 Gossypium raimondii HOM05D006776 ORTHO05D007603 2.1e-170 602.8 415 71.1
SGA_v2.0_scaffold152G36804 Striga asiatica HOM05D006776 ORTHO05D007603 6.1e-170 601.3 512 59.2
Lj4A758G74 Lonicera japonica HOM05D006776 ORTHO05D007603 4.0e-169 598.6 420 69.8
AT1G27840 Arabidopsis thaliana HOM05D006776 ORTHO05D007603 6.8e-169 597.8 453 64.2
C05p26470 Brassica napus HOM05D006776 ORTHO05D007603 8.9e-169 597.4 453 65.1
Sp1g24040 Schrenkiella parvula HOM05D006776 ORTHO05D007603 8.9e-169 597.4 453 64.5
BolC5t31368H Brassica oleracea HOM05D006776 ORTHO05D007603 4.4e-168 595.1 453 65.6
A09p38320 Brassica napus HOM05D006776 ORTHO05D007603 4.9e-167 591.7 453 64.0
CARHR027300 Cardamine hirsuta HOM05D006776 ORTHO05D007603 1.4e-166 590.1 452 63.9
BraA09t39342Z Brassica rapa HOM05D006776 ORTHO05D007603 3.2e-166 589.0 454 64.1
Sc15g0005690 Simmondsia chinensis HOM05D006776 ORTHO05D007603 3.2e-166 589.0 393 72.5
BcaNung06155 Brassica carinata HOM05D006776 ORTHO05D007603 2.0e-165 586.3 453 63.8
ATR0820G216 Amborella trichopoda HOM05D006776 ORTHO05D007603 2.3e-161 572.8 456 62.3
HPP92_001976 Vanilla planifolia HOM05D006776 ORTHO05D007603 2.3e-161 572.8 455 61.3
CDE04G2973 Ceratophyllum demersum HOM05D006776 ORTHO05D007603 1.5e-160 570.1 456 61.6
Peaxi162Scf00160g00527 Petunia axillaris HOM05D006776 ORTHO05D007603 7.5e-160 567.8 438 67.1
unitig_578.g16149 Utricularia gibba HOM05D006776 ORTHO05D007603 1.7e-159 566.6 456 63.2
BcaNung06153 Brassica carinata HOM05D006776 ORTHO05D007603 2.2e-159 566.2 450 64.2
Thhalv10007615m.g Eutrema salsugineum HOM05D006776 ORTHO05D007603 1.9e-158 563.1 448 62.5
Aa31sc113G60 Aethionema arabicum HOM05D006776 ORTHO05D007603 9.2e-158 560.8 490 59.6
AUR62038776 Chenopodium quinoa HOM05D006776 ORTHO05D007603 1.0e-156 557.4 409 67.7
Duzib116G0586 Durio zibethinus HOM05D006776 ORTHO05D007603 1.4e-153 547.0 385 69.9
Hma1.2p1_0819F.1_g223700 Hydrangea macrophylla HOM05D006776 ORTHO05D007603 9.9e-152 540.8 387 69.5
Zm00001eb147340 Zea mays HOM05D006776 ORTHO05D007603 2.2e-151 539.7 453 58.1
vmacro22055 Vaccinium macrocarpon HOM05D006776 ORTHO05D007603 3.8e-143 512.3 372 67.7
MD08G1082700 Malus domestica HOM05D006776 ORTHO05D007603 4.3e-131 472.2 376 64.4
Pp3c22_5850 Physcomitrium patens HOM05D006776 ORTHO05D007603 9.9e-128 461.1 459 49.9
Mapoly0043s0035 Marchantia polymorpha HOM05D006776 ORTHO05D007603 3.3e-123 446.0 447 49.4
AT1G19750 Arabidopsis thaliana HOM05D006776 ORTHO05D007603 8.1e-122 441.4 335 65.4
AagrBONN_evm.TU.Sc2ySwM_228.2971 Anthoceros agrestis HOM05D006776 ORTHO05D007603 3.2e-118 429.5 453 48.3
BcaC05g26777 Brassica carinata HOM05D006776 ORTHO05D007603 1.1e-115 421.0 457 51.2
SMO203G0215 Selaginella moellendorffii HOM05D006776 ORTHO05D007603 1.9e-115 420.2 452 46.5
AUR62037473 Chenopodium quinoa HOM05D006776 ORTHO05D007603 7.4e-115 418.3 304 68.8
Carub.0001s2630 Capsella rubella HOM05D006776 ORTHO05D007603 5.5e-110 402.1 308 64.6
CBR_g4873 Chara braunii HOM05D006776 ORTHO05D007603 3.4e-96 356.3 516 38.6
CDE02G3909 Ceratophyllum demersum HOM05D006776 ORTHO05D007603 6.5e-95 352.1 376 49.5
SMO353G0131 Selaginella moellendorffii HOM05D006776 ORTHO05D007603 7.2e-86 322.0 459 40.3
MD08G1084000 Malus domestica HOM05D006776 ORTHO05D007603 2.3e-84 317.0 241 67.6
SEGI_36074 Sequoiadendron giganteum HOM05D006776 ORTHO05D007603 4.5e-72 276.2 221 60.6
SEGI_38356 Sequoiadendron giganteum HOM05D006776 ORTHO05D007603 2.2e-66 257.3 199 61.3
MCO02G266 Micromonas commoda HOM05D006776 ORTHO05D007603 1.0e-63 248.4 456 34.0
Os02g0307200 Oryza sativa ssp. japonica HOM05D006776 ORTHO05D007603 1.4e-57 228.0 188 58.5
Cre01.g032100 Chlamydomonas reinhardtii HOM05D006776 ORTHO05D007603 4.9e-42 176.4 292 36.0
PRCOL_00002749 Prasinoderma coloniale HOM05D006776 ORTHO05D007603 4.7e-37 159.8 471 28.5
Lsat_1_v5_gn_7_88960 Lactuca sativa HOM05D006776 ORTHO05D007603 1.6e-29 134.8 109 60.6
Cre01.g032139 Chlamydomonas reinhardtii HOM05D006776 ORTHO05D007603 1.6e-16 91.7 124 38.7
HanXRQChr04g0100971 Helianthus annuus HOM05D000464 ORTHO05D006292 6.9e-12 76.3 319 22.9
SGA_v2.0_scaffold7G04174 Striga asiatica HOM05D000464 ORTHO05D006292 2.6e-11 74.3 346 22.8
Psat5g117120 Pisum sativum HOM05D000464 ORTHO05D006292 4.5e-11 73.6 329 21.9
TAR629G1181 Trochodendron aralioides HOM05D000464 ORTHO05D006292 1.7e-10 71.6 346 22.3
Cc04_g10820 Coffea canephora HOM05D000464 ORTHO05D006292 3.8e-10 70.5 346 22.8
Migut.D02035 Erythranthe guttata HOM05D000464 ORTHO05D006292 3.8e-10 70.5 329 22.8
ATR0580G338 Amborella trichopoda HOM05D000464 ORTHO05D006292 1.4e-09 68.6 331 24.2
PSO063G1093 Papaver somniferum HOM05D000464 ORTHO05D006292 2.1e-08 64.7 317 19.6
COL.COLO4_04956 Corchorus olitorius HOM05D000464 ORTHO05D006292 2.7e-08 64.3 147 27.2
Aqoxy3G01296 Aquilegia oxysepala HOM05D000464 ORTHO05D006292 4.6e-08 63.5 309 22.0
Medtr3g075400 Medicago truncatula HOM05D000464 ORTHO05D006292 6.0e-08 63.2 135 28.9
TPR.G22908 Trifolium pratense HOM05D000464 ORTHO05D006292 3.0e-07 60.8 325 20.6
Sp6g12330 Schrenkiella parvula HOM05D000464 ORTHO05D006292 3.9e-07 60.5 317 21.1
AL8G24250 Arabidopsis lyrata HOM05D000464 ORTHO05D006292 5.1e-07 60.1 117 26.5
AT5G50230 Arabidopsis thaliana HOM05D000464 ORTHO05D006292 5.1e-07 60.1 117 26.5
MELO3C026239.2 Cucumis melo HOM05D000464 ORTHO05D006292 5.1e-07 60.1 147 26.5
CsaV3_1G000870 Cucumis sativus L. HOM05D000464 ORTHO05D006292 5.1e-07 60.1 147 26.5
MBI10_g14637_MAGBIO Magnolia biondii HOM05D000464 ORTHO05D006292 8.7e-07 59.3 132 25.0
Thhalv10013321m.g Eutrema salsugineum HOM05D000464 ORTHO05D006292 1.1e-06 58.9 117 26.5
AagrBONN_evm.TU.Sc2ySwM_344.121 Anthoceros agrestis HOM05D000464 ORTHO05D006292 1.5e-06 58.5 115 27.8
Carub.0008s1023 Capsella rubella HOM05D000464 ORTHO05D006292 1.5e-06 58.5 118 27.1
Aa31LG3G6060 Aethionema arabicum HOM05D000464 ORTHO05D006292 2.5e-06 57.8 117 25.6
CSS0037820 Camellia sinensis var. sinensis HOM05D000526 ORTHO05D000956 2.5e-06 57.8 242 22.7
Lj3g0012644 Lotus japonicus HOM05D000526 ORTHO05D000956 2.5e-06 57.8 244 23.4
Zm00001eb222270 Zea mays HOM05D006183 ORTHO05D007844 2.5e-06 57.8 326 20.2
CSS0033617 Camellia sinensis var. sinensis HOM05D003335 ORTHO05D003853 4.3e-06 57.0 284 25.0
Cpa.g.sc1360.1 Carica papaya HOM05D000464 ORTHO05D000408 5.6e-06 56.6 151 24.5
Lj3A1052T30 Lonicera japonica HOM05D002303 ORTHO05D006504 5.6e-06 56.6 183 25.7
Os10g0464100 Oryza sativa ssp. japonica HOM05D006183 ORTHO05D007844 5.6e-06 56.6 326 20.6
CSS0025065 Camellia sinensis var. sinensis HOM05D003335 ORTHO05D003853 7.4e-06 56.2 296 23.6
DCAR_007090 Daucus carota HOM05D002303 ORTHO05D006504 7.4e-06 56.2 183 25.7
Migut.G00547 Erythranthe guttata HOM05D003335 ORTHO05D003853 7.4e-06 56.2 237 26.2


User provided reference genes

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