Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G028601 Phaseolus vulgaris HOM05D005073 ORTHO05D006166 2.9e-177 625.2 322 100.0
VMungo1309G2662 Vigna mungo HOM05D005073 ORTHO05D006166 4.9e-161 571.2 318 93.1
Glyma.04G105000 Glycine max HOM05D005073 ORTHO05D006166 2.3e-150 535.8 322 88.8
Glyma.06G106000 Glycine max HOM05D005073 ORTHO05D006166 2.1e-148 529.3 323 87.3
Lj1g0017290 Lotus japonicus HOM05D005073 ORTHO05D006166 1.2e-130 470.3 327 79.8
Ca_15226_v3 Cicer arietinum L. HOM05D005073 ORTHO05D006166 1.4e-128 463.4 323 78.9
arahy.Tifrunner.gnm1.ann1.T10PLA Arachis hypogaea HOM05D005073 ORTHO05D006166 3.9e-126 455.3 325 74.8
Psat5g137200 Pisum sativum HOM05D005073 ORTHO05D006166 9.6e-125 450.7 323 75.5
TPR.G34614 Trifolium pratense HOM05D005073 ORTHO05D006166 4.1e-123 445.3 320 78.1
Medtr3g073790 Medicago truncatula HOM05D005073 ORTHO05D006166 4.5e-122 441.8 326 74.8
arahy.Tifrunner.gnm1.ann1.K8DV01 Arachis hypogaea HOM05D005073 ORTHO05D006166 7.2e-120 434.5 334 71.3
Lalb_Chr23g0270691 Lupinus albus HOM05D005073 ORTHO05D006166 8.7e-118 427.6 334 71.9
GSVIVG01008990001 Vitis vinifera HOM05D005073 ORTHO05D006166 2.5e-117 426.0 282 80.1
Dinv44743 Davidia involucrata HOM05D005073 ORTHO05D006166 4.3e-117 425.2 312 73.4
Haze_00571 Corylus avellana HOM05D005073 ORTHO05D006166 6.3e-116 421.4 321 74.1
Ciclev10003846m.g Citrus clementina HOM05D005073 ORTHO05D006166 1.5e-114 416.8 273 82.1
TAR381G0980 Trochodendron aralioides HOM05D005073 ORTHO05D006166 2.0e-114 416.4 288 76.4
CSS0031049 Camellia sinensis var. sinensis HOM05D005073 ORTHO05D006166 3.4e-114 415.6 267 82.4
CSS0000538 Camellia sinensis var. sinensis HOM05D005073 ORTHO05D006166 4.5e-114 415.2 267 82.4
CiPaw.05G232900 Carya illinoinensis HOM05D005073 ORTHO05D006166 4.5e-114 415.2 326 71.5
Atru.chr13.1265 Acer truncatum HOM05D005073 ORTHO05D006166 5.9e-114 414.8 282 78.4
Actinidia30750 Actinidia chinensis HOM05D005073 ORTHO05D006166 5.0e-113 411.8 270 80.7
CsaV3_5G023620 Cucumis sativus L. HOM05D005073 ORTHO05D006166 8.5e-113 411.0 314 70.1
Eucgr.F02969 Eucalyptus grandis HOM05D005073 ORTHO05D006166 1.1e-112 410.6 283 75.6
Gohir.A05G229400 Gossypium hirsutum HOM05D005073 ORTHO05D006166 1.4e-112 410.2 274 79.6
Hma1.2p1_0120F.1_g057030 Hydrangea macrophylla HOM05D005073 ORTHO05D006166 3.2e-112 409.1 269 78.8
Duzib041G0650 Durio zibethinus HOM05D005073 ORTHO05D006166 4.2e-112 408.7 339 68.7
Sopen04g028940 Solanum pennellii HOM05D005073 ORTHO05D006166 7.2e-112 407.9 333 68.8
Gohir.D05G231700 Gossypium hirsutum HOM05D005073 ORTHO05D006166 2.7e-111 406.0 274 78.5
Potri.002G092600 Populus trichocarpa HOM05D005073 ORTHO05D006166 2.7e-111 406.0 281 77.2
PGSC0003DMG400009470 Solanum tuberosum HOM05D005073 ORTHO05D006166 2.7e-111 406.0 336 68.8
Carub.0002s2490 Capsella rubella HOM05D005073 ORTHO05D006166 3.6e-111 405.6 288 75.0
Nitab4.5_0000469g0190 Nicotiana tabacum HOM05D005073 ORTHO05D006166 3.6e-111 405.6 338 67.2
Peaxi162Scf00310g00019 Petunia axillaris HOM05D005073 ORTHO05D006166 6.1e-111 404.8 271 79.3
CAN.G517.17 Capsicum annuum HOM05D005073 ORTHO05D006166 7.9e-111 404.4 276 77.5
Gorai.009G239900 Gossypium raimondii HOM05D005073 ORTHO05D006166 7.9e-111 404.4 274 78.5
Thecc.08G112000 Theobroma cacao HOM05D005073 ORTHO05D006166 1.4e-110 403.7 252 83.7
MELO3C022795.2 Cucumis melo HOM05D005073 ORTHO05D006166 3.9e-110 402.1 314 69.1
SGA_v2.0_scaffold24G10294 Striga asiatica HOM05D005073 ORTHO05D006166 6.7e-110 401.4 272 77.6
FvH4_5g38010 Fragaria vesca HOM05D005073 ORTHO05D006166 8.8e-110 401.0 286 73.4
Sabra02G0073100 Salix brachista HOM05D005073 ORTHO05D006166 8.8e-110 401.0 246 82.9
SalBow7G0210 Salvia bowleyana HOM05D005073 ORTHO05D006166 1.1e-109 400.6 285 73.7
CARHR071470 Cardamine hirsuta HOM05D005073 ORTHO05D006166 2.5e-109 399.4 293 72.4
FAN13G1954 Fragaria x ananassa HOM05D005073 ORTHO05D006166 2.5e-109 399.4 284 73.6
Nitab4.5_0009824g0010 Nicotiana tabacum HOM05D005073 ORTHO05D006166 2.5e-109 399.4 298 72.8
HanXRQChr10g0278501 Helianthus annuus HOM05D005073 ORTHO05D006166 3.3e-109 399.1 289 73.0
SGA_v2.0_scaffold48G18021 Striga asiatica HOM05D005073 ORTHO05D006166 3.3e-109 399.1 330 69.1
Sed0012840 Sechium edule HOM05D005073 ORTHO05D006166 5.7e-109 398.3 343 65.9
Cpa.g.sc66.92 Carica papaya HOM05D005073 ORTHO05D006166 9.7e-109 397.5 278 77.0
Nn1g05274 Nelumbo nucifera HOM05D005073 ORTHO05D006166 9.7e-109 397.5 316 69.0
FAN04G2698 Fragaria x ananassa HOM05D005073 ORTHO05D006166 1.3e-108 397.1 272 76.1
Atru.BG.242.p Acer truncatum HOM05D005073 ORTHO05D006166 2.2e-108 396.4 247 83.0
Thhalv10018349m.g Eutrema salsugineum HOM05D005073 ORTHO05D006166 3.7e-108 395.6 298 71.5
ClCG03G008990 Citrullus lanatus HOM05D005073 ORTHO05D006166 4.8e-108 395.2 283 74.2
Oeu024557.1 Olea europaea HOM05D005073 ORTHO05D006166 4.8e-108 395.2 333 67.0
Aa31LG4G8070 Aethionema arabicum HOM05D005073 ORTHO05D006166 8.2e-108 394.4 287 74.6
Migut.C00179 Erythranthe guttata HOM05D005073 ORTHO05D006166 1.1e-107 394.0 268 76.5
FAN08G1532 Fragaria x ananassa HOM05D005073 ORTHO05D006166 1.1e-107 394.0 286 73.1
Prupe.1G511900 Prunus persica HOM05D005073 ORTHO05D006166 1.1e-107 394.0 268 76.9
MD08G1177300 Malus domestica HOM05D005073 ORTHO05D006166 1.4e-107 393.7 319 67.4
RcHm_v2.0_Chr7g0239951 Rosa chinensis HOM05D005073 ORTHO05D006166 1.8e-107 393.3 271 74.9
AL2G38280 Arabidopsis lyrata HOM05D005073 ORTHO05D006166 2.4e-107 392.9 294 72.1
AT1G78010 Arabidopsis thaliana HOM05D005073 ORTHO05D006166 3.1e-107 392.5 294 71.8
THA.LOC104810083 Tarenaya hassleriana HOM05D005073 ORTHO05D006166 4.1e-107 392.1 274 77.0
Cc10_g05860 Coffea canephora HOM05D005073 ORTHO05D006166 6.9e-107 391.3 332 66.3
COL.COLO4_16466 Corchorus olitorius HOM05D005073 ORTHO05D006166 6.9e-107 391.3 341 67.2
Aqoxy1G01853 Aquilegia oxysepala HOM05D005073 ORTHO05D006166 2.0e-106 389.8 293 70.6
A07p43250 Brassica napus HOM05D005073 ORTHO05D006166 2.0e-106 389.8 289 70.6
C06p51930 Brassica napus HOM05D005073 ORTHO05D006166 2.6e-106 389.4 331 65.3
Manes.18G070400 Manihot esculenta HOM05D005073 ORTHO05D006166 4.5e-106 388.7 342 64.0
PGR044G0799 Punica granatum HOM05D005073 ORTHO05D006166 1.0e-105 387.5 279 74.6
FAN18G0258 Fragaria x ananassa HOM05D005073 ORTHO05D006166 1.7e-105 386.7 312 67.3
CANSAT54G2794 Cannabis sativa HOM05D005073 ORTHO05D006166 3.8e-105 385.6 249 80.3
CDE03G0055 Ceratophyllum demersum HOM05D005073 ORTHO05D006166 1.1e-104 384.0 278 72.3
ECA246G0226 Erigeron canadensis HOM05D005073 ORTHO05D006166 1.1e-104 384.0 270 74.8
Sp5g33150 Schrenkiella parvula HOM05D005073 ORTHO05D006166 2.5e-104 382.9 300 69.7
Os08g0407000 Oryza sativa ssp. japonica HOM05D005073 ORTHO05D006166 9.4e-104 380.9 241 79.7
PSO447G0212 Papaver somniferum HOM05D005073 ORTHO05D006166 2.8e-100 369.4 314 65.6
PSO210G7769 Papaver somniferum HOM05D005073 ORTHO05D006166 3.7e-100 369.0 314 65.9
ATR0564G350 Amborella trichopoda HOM05D005073 ORTHO05D006166 8.2e-100 367.9 274 71.2
HPP92_016476 Vanilla planifolia HOM05D005073 ORTHO05D006166 1.1e-99 367.5 283 66.8
AUR62034358 Chenopodium quinoa HOM05D005073 ORTHO05D006166 1.8e-99 366.7 300 68.3
unitig_0.g2069 Utricularia gibba HOM05D005073 ORTHO05D006166 1.8e-99 366.7 247 76.9
Hund26651 Selenicereus undatus HOM05D005073 ORTHO05D006166 5.3e-99 365.2 344 60.8
HPP92_016434 Vanilla planifolia HOM05D005073 ORTHO05D006166 7.0e-99 364.8 283 65.7
AUR62022347 Chenopodium quinoa HOM05D005073 ORTHO05D006166 9.1e-99 364.4 300 67.7
Lsat_1_v5_gn_6_102120 Lactuca sativa HOM05D005073 ORTHO05D006166 3.5e-98 362.5 289 66.8
Lj4C715T1 Lonicera japonica HOM05D005073 ORTHO05D006166 1.0e-97 360.9 269 71.0
Zm00001eb178820 Zea mays HOM05D005073 ORTHO05D006166 3.6e-95 352.4 231 76.6
BolC6t40215H Brassica oleracea HOM05D005073 ORTHO05D006166 4.7e-95 352.1 290 65.5
SEGI_22824 Sequoiadendron giganteum HOM05D005073 ORTHO05D006166 6.1e-95 351.7 245 73.5
DCAR_008707 Daucus carota HOM05D005073 ORTHO05D006166 1.0e-94 350.9 270 70.4
BraA07t31846Z Brassica rapa HOM05D005073 ORTHO05D006166 1.5e-93 347.1 289 65.1
EL10Ac1g01681 Beta vulgaris HOM05D005073 ORTHO05D006166 8.2e-92 341.3 296 65.5
Ah.16g109530 Amaranthus hybridus HOM05D005073 ORTHO05D006166 4.1e-91 339.0 321 61.1
Sc12g0004230 Simmondsia chinensis HOM05D005073 ORTHO05D006166 2.0e-90 336.7 239 74.1
Pp3c13_12510 Physcomitrium patens HOM05D005073 ORTHO05D006166 3.0e-86 322.8 280 61.1
Pp3c13_12516 Physcomitrium patens HOM05D005073 ORTHO05D006166 3.0e-86 322.8 280 61.1
Mapoly0034s0014 Marchantia polymorpha HOM05D005073 ORTHO05D006166 2.2e-84 316.6 243 67.5
AagrBONN_evm.TU.Sc2ySwM_228.2622 Anthoceros agrestis HOM05D005073 ORTHO05D006166 8.3e-84 314.7 236 67.4
BcaC08g47633 Brassica carinata HOM05D005073 ORTHO05D006166 9.1e-83 311.2 337 54.6
CBR_g9146 Chara braunii HOM05D005073 ORTHO05D006166 7.7e-82 308.1 245 63.3
SMO137G0212 Selaginella moellendorffii HOM05D005073 ORTHO05D006166 2.7e-79 299.7 245 63.7
Cre16.g681238 Chlamydomonas reinhardtii HOM05D005073 ORTHO05D006166 3.7e-68 262.7 240 56.7
MBI02_g30882_MAGBIO Magnolia biondii HOM05D005073 ORTHO05D006166 1.1e-67 261.2 291 55.3
PRCOL_00000127 Prasinoderma coloniale HOM05D005073 ORTHO05D006166 2.2e-60 236.9 254 50.4
MCO14G420 Micromonas commoda HOM05D005073 ORTHO05D006166 3.7e-60 236.1 279 49.1
QL12p035942 Quercus lobata HOM05D005073 ORTHO05D006166 1.6e-58 230.7 129 92.2
QL12p035939 Quercus lobata HOM05D005073 ORTHO05D006166 1.1e-48 198.0 208 56.2
Rhsim06G0085400 Rhododendron simsii HOM05D005073 ORTHO05D006166 5.1e-41 172.6 170 57.6
vmacro21228 Vaccinium macrocarpon HOM05D005073 ORTHO05D006166 2.1e-39 167.2 170 56.5
Actinidia10299 Actinidia chinensis HOM05D005073 ORTHO05D006166 2.2e-36 157.1 275 41.1
Hma1.2p1_0120F.1_g057040 Hydrangea macrophylla HOM05D005073 ORTHO05D006166 3.9e-33 146.4 80 90.0
MD15G1355000 Malus domestica HOM05D005073 ORTHO05D006166 9.9e-29 131.7 79 82.3
A09p41080 Brassica napus HOM05D005073 ORTHO05D006166 3.0e-25 120.2 142 49.3
Duzib093G1393 Durio zibethinus HOM05D005073 ORTHO05D006166 3.0e-25 120.2 167 46.1
C09p47800 Brassica napus HOM05D005073 ORTHO05D006166 6.7e-25 119.0 171 45.0
BcaC07g39279 Brassica carinata HOM05D005073 ORTHO05D006166 4.8e-23 112.8 154 44.8
Cfa027202 Carpinus fangiana HOM05D005073 ORTHO05D006166 4.8e-23 112.8 327 31.5
A03p65370 Brassica napus HOM05D005073 ORTHO05D006166 8.1e-23 112.1 138 49.3
BraA03t15591Z Brassica rapa HOM05D005073 ORTHO05D006166 8.1e-23 112.1 138 49.3
C08p22880 Brassica napus HOM05D005073 ORTHO05D006166 1.1e-22 111.7 145 46.9
BolC8t49924H Brassica oleracea HOM05D005073 ORTHO05D006166 1.1e-22 111.7 145 46.9
C05p36400 Brassica napus HOM05D005073 ORTHO05D006166 1.8e-22 110.9 141 48.2
BcaC05g27652 Brassica carinata HOM05D005073 ORTHO05D006166 6.9e-22 109.0 143 46.2
BcaC06g36777 Brassica carinata HOM05D005073 ORTHO05D006166 1.1e-19 101.7 142 45.1
BolC7t40457H Brassica oleracea HOM05D005073 ORTHO05D006166 1.1e-19 101.7 142 45.1
BolC7t40456H Brassica oleracea HOM05D005073 ORTHO05D006166 1.0e-17 95.1 138 45.7
BraA09t39601Z Brassica rapa HOM05D005073 ORTHO05D006166 5.3e-14 82.8 112 46.4
A04p08580 Brassica napus HOM05D005073 ORTHO05D006166 4.5e-13 79.7 112 45.5
BraA04t16552Z Brassica rapa HOM05D005073 ORTHO05D006166 4.5e-13 79.7 112 45.5
MBI18_g42472_MAGBIO Magnolia biondii HOM05D005073 ORTHO05D006166 2.1e-07 60.8 41 80.5
C07p00040 Brassica napus HOM05D005073 ORTHO05D006166 2.4e-06 57.4 43 55.8
C07p00050 Brassica napus HOM05D005073 ORTHO05D006166 2.4e-06 57.4 43 55.8


User provided reference genes

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