Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G221700 Phaseolus vulgaris HOM05D004863 ORTHO05D005802 1.5e-292 1008.8 509 100.0
VMungo0647G0293 Vigna mungo HOM05D004863 ORTHO05D005802 2.5e-244 848.6 503 86.5
Phvul.007G217900 Phaseolus vulgaris HOM05D004863 ORTHO05D005802 6.8e-242 840.5 519 85.7
Glyma.14G057200 Glycine max HOM05D004863 ORTHO05D005802 1.9e-231 805.8 518 80.3
Phvul.001G192700 Phaseolus vulgaris HOM05D004863 ORTHO05D005802 2.0e-193 679.5 451 81.8
Glyma.02G263700 Glycine max HOM05D004863 ORTHO05D005802 4.8e-179 631.7 436 75.9
LjContig00357g0010590 Lotus japonicus HOM05D004863 ORTHO05D005802 6.7e-173 611.3 536 64.4
Ca_05985_v3 Cicer arietinum L. HOM05D004863 ORTHO05D005802 3.5e-161 572.4 537 61.8
arahy.Tifrunner.gnm1.ann1.U87T4F Arachis hypogaea HOM05D004863 ORTHO05D005802 6.4e-139 498.4 538 55.2
Cfa001286 Carpinus fangiana HOM05D004863 ORTHO05D005802 5.6e-135 485.3 544 54.6
arahy.Tifrunner.gnm1.ann1.SVWC8K Arachis hypogaea HOM05D004863 ORTHO05D005802 1.6e-134 483.8 564 52.1
QL08p063631 Quercus lobata HOM05D004863 ORTHO05D005802 1.6e-134 483.8 542 54.2
Psat2g030120 Pisum sativum HOM05D004863 ORTHO05D005802 6.8e-133 478.4 534 53.7
Manes.10G009400 Manihot esculenta HOM05D004863 ORTHO05D005802 3.3e-127 459.5 545 51.9
Ciclev10031002m.g Citrus clementina HOM05D004863 ORTHO05D005802 3.4e-124 449.5 545 49.4
Potri.008G072300 Populus trichocarpa HOM05D004863 ORTHO05D005802 7.6e-124 448.4 547 50.5
Haze_17264 Corylus avellana HOM05D000087 ORTHO05D000793 2.2e-123 446.8 520 53.3
TWI09G1305 Tripterygium wilfordii HOM05D004863 ORTHO05D005802 9.2e-122 441.4 544 50.6
Medtr5g083120 Medicago truncatula HOM05D004863 ORTHO05D005802 4.3e-119 432.6 526 51.5
Atru.chr12.77 Acer truncatum HOM05D004863 ORTHO05D005802 9.0e-117 424.9 536 49.8
Actinidia00665 Actinidia chinensis HOM05D004863 ORTHO05D005802 1.4e-114 417.5 520 50.0
Lalb_Chr10g0105231 Lupinus albus HOM05D004863 ORTHO05D005802 1.4e-114 417.5 325 68.9
Prupe.2G254800 Prunus persica HOM05D004863 ORTHO05D005802 2.4e-114 416.8 543 48.1
Hma1.2p1_3100F.1_g332690 Hydrangea macrophylla HOM05D004863 ORTHO05D005802 1.2e-113 414.5 551 48.1
CANSAT56G0816 Cannabis sativa HOM05D004863 ORTHO05D005802 7.8e-113 411.8 540 48.5
Lj4g0013997 Lotus japonicus HOM05D004863 ORTHO05D005802 1.0e-112 411.4 461 54.9
PGR142G2246 Punica granatum HOM05D004863 ORTHO05D005802 1.3e-112 411.0 549 47.7
Sabra08G0053500 Salix brachista HOM05D004863 ORTHO05D005802 1.9e-111 407.1 543 48.1
Ca_05983_v3 Cicer arietinum L. HOM05D004863 ORTHO05D005802 1.4e-109 401.0 405 58.8
CANSAT32G0002 Cannabis sativa HOM05D004863 ORTHO05D005802 1.2e-108 397.9 539 47.5
Migut.F00644 Erythranthe guttata HOM05D004863 ORTHO05D005802 1.2e-108 397.9 554 45.7
SGA_v2.0_scaffold60G20969 Striga asiatica HOM05D004863 ORTHO05D005802 2.2e-107 393.7 555 45.8
TPR.G38454 Trifolium pratense HOM05D004863 ORTHO05D005802 7.1e-106 388.7 561 46.2
Dinv21763 Davidia involucrata HOM05D004863 ORTHO05D005802 6.7e-104 382.1 515 48.5
Sopen06g031290 Solanum pennellii HOM05D004863 ORTHO05D005802 1.6e-102 377.5 552 45.3
SalBow3G1147 Salvia bowleyana HOM05D004863 ORTHO05D005802 1.1e-101 374.8 574 44.1
CiPaw.01G301000 Carya illinoinensis HOM05D004863 ORTHO05D005802 2.4e-101 373.6 473 50.1
Eucgr.G03083 Eucalyptus grandis HOM05D004863 ORTHO05D005802 1.2e-100 371.3 542 45.0
CsaV3_5G010370 Cucumis sativus L. HOM05D004863 ORTHO05D005802 7.6e-100 368.6 556 46.4
MELO3C018373.2 Cucumis melo HOM05D004863 ORTHO05D005802 2.9e-99 366.7 560 46.8
Nitab4.5_0001163g0110 Nicotiana tabacum HOM05D004863 ORTHO05D005802 3.2e-98 363.2 583 41.2
Sc10g0002560 Simmondsia chinensis HOM05D004863 ORTHO05D005802 1.1e-95 354.8 553 43.9
TAR357G0004 Trochodendron aralioides HOM05D004863 ORTHO05D005802 1.9e-95 354.0 535 44.3
Cc02_g05730 Coffea canephora HOM05D004863 ORTHO05D005802 5.6e-95 352.4 540 42.4
CAN.G1432.18 Capsicum annuum HOM05D004863 ORTHO05D005802 4.8e-94 349.4 552 41.8
Nitab4.5_0012306g0020 Nicotiana tabacum HOM05D004863 ORTHO05D005802 3.1e-93 346.7 598 39.6
THA.LOC104816534 Tarenaya hassleriana HOM05D004863 ORTHO05D005802 4.0e-93 346.3 546 42.7
Sed0025167 Sechium edule HOM05D004863 ORTHO05D005802 6.9e-93 345.5 550 45.5
Rhsim09G0179600 Rhododendron simsii HOM05D004863 ORTHO05D005802 2.2e-91 340.5 600 40.8
GSVIVG01032766001 Vitis vinifera HOM05D004863 ORTHO05D005802 1.2e-89 334.7 547 44.4
Cpa.g.sc19.141 Carica papaya HOM05D004863 ORTHO05D005802 3.0e-88 330.1 598 40.5
MSTRG.8933 Avicennia marina HOM05D004863 ORTHO05D005802 8.7e-88 328.6 491 45.2
EL10Ac2g04883 Beta vulgaris HOM05D004863 ORTHO05D005802 1.1e-87 328.2 566 41.0
AUR62012290 Chenopodium quinoa HOM05D004863 ORTHO05D005802 1.3e-86 324.7 558 40.1
Aqoxy1G01634 Aquilegia oxysepala HOM05D004863 ORTHO05D005802 2.4e-85 320.5 551 41.4
Aqoxy5G04144 Aquilegia oxysepala HOM05D004863 ORTHO05D005802 4.5e-84 316.2 558 41.4
Nn2g10959 Nelumbo nucifera HOM05D004863 ORTHO05D005802 1.0e-83 315.1 568 41.4
RcHm_v2.0_Chr7g0236141 Rosa chinensis HOM05D004863 ORTHO05D005802 1.1e-82 311.6 549 42.3
FAN13G2483 Fragaria x ananassa HOM05D004863 ORTHO05D005802 1.2e-81 308.1 547 41.9
FAN04G1688 Fragaria x ananassa HOM05D004863 ORTHO05D005802 4.6e-81 306.2 553 41.2
Aa31LG11G6560 Aethionema arabicum HOM05D004863 ORTHO05D005802 6.1e-81 305.8 588 37.6
FvH4_5g35270 Fragaria vesca HOM05D004863 ORTHO05D005802 6.1e-81 305.8 551 41.9
TPR.G25338 Trifolium pratense HOM05D004863 ORTHO05D005802 5.7e-79 299.3 373 49.9
FAN18G0869 Fragaria x ananassa HOM05D004863 ORTHO05D005802 2.8e-78 297.0 573 40.7
ECA234G2111 Erigeron canadensis HOM05D004863 ORTHO05D005802 4.8e-78 296.2 531 39.4
Ah.16g108070 Amaranthus hybridus HOM05D004863 ORTHO05D005802 9.1e-77 292.0 566 36.9
ECA233G5735 Erigeron canadensis HOM05D000718 ORTHO05D005802 1.2e-76 291.6 551 38.1
AUR62022930 Chenopodium quinoa HOM05D004863 ORTHO05D005802 4.5e-76 289.7 552 38.8
A10p30780 Brassica napus HOM05D004863 ORTHO05D005297 1.7e-75 287.7 556 38.7
FAN08G0290 Fragaria x ananassa HOM05D004863 ORTHO05D005802 1.7e-75 287.7 552 40.0
Sp6g37360 Schrenkiella parvula HOM05D004863 ORTHO05D005802 2.9e-75 287.0 556 38.5
Thhalv10013002m.g Eutrema salsugineum HOM05D004863 ORTHO05D005802 5.0e-75 286.2 550 36.5
Sed0002460 Sechium edule HOM05D004863 ORTHO05D005802 5.0e-75 286.2 544 39.9
MD12G1179600 Malus domestica HOM05D004863 ORTHO05D005802 1.4e-74 284.6 478 41.6
BraA10t45119Z Brassica rapa HOM05D004863 ORTHO05D005297 1.9e-74 284.3 554 39.7
PSO170G5836 Papaver somniferum HOM05D004863 ORTHO05D005802 1.9e-74 284.3 580 39.0
Medtr5g081260 Medicago truncatula HOM05D004863 ORTHO05D005802 4.2e-74 283.1 365 49.0
PSO017G6293 Papaver somniferum HOM05D004863 ORTHO05D005802 2.3e-72 277.3 581 38.9
AL6G15380 Arabidopsis lyrata HOM05D004863 ORTHO05D005802 4.4e-71 273.1 550 37.5
CARHR207780 Cardamine hirsuta HOM05D004863 ORTHO05D005802 5.7e-71 272.7 547 36.9
AT5G05490 Arabidopsis thaliana HOM05D004863 ORTHO05D005802 2.2e-70 270.8 549 36.4
Carub.0006s0439 Capsella rubella HOM05D004863 ORTHO05D005802 2.2e-70 270.8 554 37.4
Ah.16g103820 Amaranthus hybridus HOM05D004863 ORTHO05D005802 6.3e-70 269.2 563 36.1
BcaC06g32260 Brassica carinata HOM05D004863 ORTHO05D005297 6.3e-70 269.2 551 38.1
C09p71270 Brassica napus HOM05D004863 ORTHO05D005297 1.4e-69 268.1 559 37.7
BolC9t59888H Brassica oleracea HOM05D004863 ORTHO05D005802 1.4e-69 268.1 559 37.7
Duzib128G0112 Durio zibethinus HOM05D004863 ORTHO05D005802 3.5e-68 263.5 532 37.4
RcHm_v2.0_Chr0c11g0499371 Rosa chinensis HOM05D004863 ORTHO05D005802 7.7e-68 262.3 459 42.0
ClCG07G004460 Citrullus lanatus HOM05D004863 ORTHO05D005802 5.0e-67 259.6 540 39.4
COL.COLO4_25779 Corchorus olitorius HOM05D007663 ORTHO05D009455 9.4e-66 255.4 543 39.0
EL10Ac8g19300 Beta vulgaris HOM05D004863 ORTHO05D005802 1.5e-63 248.1 520 37.9
Actinidia00966 Actinidia chinensis HOM05D004863 ORTHO05D005802 2.6e-63 247.3 325 46.5
Gorai.012G078600 Gossypium raimondii HOM05D004863 ORTHO05D005802 4.2e-58 229.9 520 35.6
Gohir.D04G070101 Gossypium hirsutum HOM05D004863 ORTHO05D005802 1.2e-57 228.4 520 35.4
Gohir.A05G331501 Gossypium hirsutum HOM05D004863 ORTHO05D005802 1.0e-56 225.3 522 34.7
Peaxi162Scf00114g01014 Petunia axillaris HOM05D004863 ORTHO05D005802 8.3e-54 215.7 404 38.6
Solyc06g074870.3 Solanum lycopersicum HOM05D004863 ORTHO05D005802 2.0e-52 211.1 363 41.3
DCAR_011837 Daucus carota HOM05D004863 ORTHO05D001062 3.5e-52 210.3 534 33.7
RcHm_v2.0_Chr7g0236461 Rosa chinensis HOM05D004863 ORTHO05D005802 2.7e-49 200.7 328 42.4
RcHm_v2.0_Chr7g0236501 Rosa chinensis HOM05D004863 ORTHO05D005802 2.7e-49 200.7 328 42.4
unitig_46.g18609 Utricularia gibba HOM05D004863 ORTHO05D005802 7.5e-47 192.6 541 32.2
Lalb_Chr10g0105241 Lupinus albus HOM05D004863 ORTHO05D005802 1.2e-44 185.3 158 63.3
RcHm_v2.0_Chr7g0230601 Rosa chinensis HOM05D004863 ORTHO05D005802 7.7e-44 182.6 313 44.1
Ca_05986_v3 Cicer arietinum L. HOM05D001661 ORTHO05D001575 1.0e-43 182.2 161 64.0
MBI03_g10782_MAGBIO Magnolia biondii HOM05D004863 ORTHO05D005802 3.4e-39 167.2 370 38.1
HPP92_003692 Vanilla planifolia HOM05D004863 ORTHO05D005802 2.7e-36 157.5 540 30.9
ATR0174G036 Amborella trichopoda HOM05D004863 ORTHO05D005802 1.0e-32 145.6 535 30.8
RcHm_v2.0_Chr0c11g0499581 Rosa chinensis HOM05D004863 ORTHO05D005802 1.3e-30 138.7 191 45.5
Medtr5g081270 Medicago truncatula HOM05D004863 ORTHO05D005802 1.1e-29 135.6 152 53.3
HanXRQChr08g0221791 Helianthus annuus HOM05D004863 ORTHO05D005802 3.0e-27 127.5 161 46.0
RcHm_v2.0_Chr5g0049691 Rosa chinensis HOM05D004863 ORTHO05D005802 3.0e-27 127.5 272 39.0
CAN.G1001.50 Capsicum annuum HOM05D004863 ORTHO05D005802 8.6e-27 125.9 142 50.0
PSO017G2966 Papaver somniferum HOM05D004863 ORTHO05D005802 4.3e-26 123.6 305 33.1
TPR.G25337 Trifolium pratense HOM05D004863 ORTHO05D005802 5.6e-26 123.2 192 44.8
PSO170G1093 Papaver somniferum HOM05D004863 ORTHO05D005802 1.2e-25 122.1 535 28.8
TAR362G0045 Trochodendron aralioides HOM05D004863 ORTHO05D005802 8.0e-25 119.4 163 50.3
CDE02G3956 Ceratophyllum demersum HOM05D004863 ORTHO05D005802 1.4e-24 118.6 142 47.9
CDE09G0264 Ceratophyllum demersum HOM05D004863 ORTHO05D005802 5.2e-24 116.7 239 39.7
SEGI_17620 Sequoiadendron giganteum HOM05D004863 ORTHO05D005802 1.0e-19 102.4 519 24.1
RcHm_v2.0_Chr7g0230591 Rosa chinensis HOM05D004863 ORTHO05D005802 3.3e-18 97.4 91 53.8
Thecc.10G012000 Theobroma cacao HOM05D004863 ORTHO05D005802 2.8e-17 94.4 76 60.5
HanXRQChr08g0221801 Helianthus annuus HOM05D004863 ORTHO05D005802 1.4e-16 92.0 123 45.5
RcHm_v2.0_Chr7g0231161 Rosa chinensis HOM05D004863 ORTHO05D005802 1.8e-16 91.7 104 48.1
MD04G1165800 Malus domestica HOM05D004863 ORTHO05D005802 1.2e-15 89.0 126 46.8
PSO063G7659 Papaver somniferum HOM05D004863 ORTHO05D005802 1.3e-14 85.5 112 46.4
RcHm_v2.0_Chr7g0236431 Rosa chinensis HOM05D004863 ORTHO05D005802 4.9e-14 83.6 107 43.9
RcHm_v2.0_Chr5g0049701 Rosa chinensis HOM05D004863 ORTHO05D005802 3.2e-13 80.9 65 58.5
PSO478G0733 Papaver somniferum HOM05D000294 ORTHO05D000177 4.1e-13 80.5 115 45.2
PSO063G5055 Papaver somniferum HOM05D003057 ORTHO05D003904 1.2e-12 79.0 118 43.2
Zm00001eb297000 Zea mays HOM05D004863 ORTHO05D005802 1.7e-11 75.1 117 41.0
PSO170G4809 Papaver somniferum HOM05D003057 ORTHO05D003904 1.1e-10 72.4 105 39.0
PSO339G1811 Papaver somniferum HOM05D000294 ORTHO05D000177 1.1e-10 72.4 105 39.0
PSO832G1972 Papaver somniferum HOM05D000294 ORTHO05D000177 1.1e-10 72.4 105 39.0
PSO832G3441 Papaver somniferum HOM05D000294 ORTHO05D000177 1.1e-10 72.4 105 39.0
Peaxi162Scf00114g01013 Petunia axillaris HOM05D004863 ORTHO05D005802 1.1e-10 72.4 68 51.5
Pp3c3_26738 Physcomitrium patens HOM05D004863 ORTHO05D005802 4.3e-10 70.5 589 24.4
SMO142G0069 Selaginella moellendorffii HOM05D004863 ORTHO05D005802 5.6e-10 70.1 530 23.6
Oeu041939.1 Olea europaea HOM05D004863 ORTHO05D005802 7.3e-10 69.7 54 57.4
CSS0049037 Camellia sinensis var. sinensis HOM05D004863 ORTHO05D005802 3.6e-09 67.4 236 30.9
Solyc06g074860.2 Solanum lycopersicum HOM05D004863 ORTHO05D005802 3.6e-09 67.4 67 49.3
CSS0008249 Camellia sinensis var. sinensis HOM05D004863 ORTHO05D005802 8.1e-09 66.2 229 31.0
FAN18G1445 Fragaria x ananassa HOM05D004863 ORTHO05D005802 8.1e-09 66.2 113 42.5
AagrBONN_evm.TU.Sc2ySwM_117.1674 Anthoceros agrestis HOM05D004863 ORTHO05D005802 5.8e-07 60.1 425 22.6
EL10Ac8g19299 Beta vulgaris HOM05D004863 ORTHO05D005802 5.8e-07 60.1 51 60.8


User provided reference genes

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